Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000870.1

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Forward (+)

97481 .. 98916

Gene Structure 1436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000870.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

atgtggtccgaatttgccataaatgtgtccggtgaatgggatggttatggagcagacttcacaaccgaagggaacccgattgaactcccaaaaagggttgtgcctgatgcttacagggagtgggaggttaaggttttagactggcagactcaatgtcccactcttgctgacccagaagaccaagttcttgcctacaagacgatagagctacttcccacagttggatgtgaagccgatgctgctacacgatatagcattcttgagaggaatgtgggtggtgtgaacaacaaagtttctgcctttgcatatcagtctagtggatgttatgtatctgttttgccagtggaggataagagtttgaataagttgttggaagtagagtattgcttgatcaatcctcaagataaggagtctcgtgtgaggataattcaggtgattcgcatagacaatatgaagatggtattgcagagtcttagagttctttgtgaacagtggtatgggccattcagaaatggggagcaattaggtggattgccatccgtgattctgcttttgcttctacgcccgcattggaagcttcaaaagttgttggtacttggcggagctccagtgctattgccacttttaatggttctcaaaatcatggtaagctgccgtcctgggttgaaagtttttaccccttattcatctgaagatgctcgtggactgctaaaagctgccattagggaccctgatcgtgttgtgggtcttcattcgccagataaaccattgtcatgtagagttcaagtagtacagcaagcgacgttaagcttcaatggagaagcttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

30.83

Weight (kDa)

5.59

Isoelectric Point (pI)

38.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	566, 600
AcsI	RAATTY	1 cut(s)	11
AcuI	CTGAAG	1 cut(s)	711
AfaI	GTAC	2 cut(s)	594, 792
AfiI	CCNNNNNNNGG	3 cut(s)	36, 94, 221
AgsI	TTSAA	6 cut(s)	83, 361, 581, 667, 785, 814
AhdI	GACNNNNNGTC	1 cut(s)	153
AjnI	CCWGG	1 cut(s)	658
AjuI	GAANNNNNNNTTGG	2 cut(s)	353, 385
AluBI	AGCT	7 cut(s)	208, 577, 605, 651, 716, 810, 824
AluI	AGCT	7 cut(s)	208, 577, 605, 651, 716, 810, 824
Alw21I	GWGCWC	1 cut(s)	607
Alw26I	GTCTC	1 cut(s)	417
AoxI	GGCC	1 cut(s)	500
ApeKI	GCWGC	3 cut(s)	239, 651, 716
ApoI	RAATTY	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	6, 500, 727
AsuHPI	GGTGA	2 cut(s)	44, 445
AvaII	GGWCC	2 cut(s)	6, 727
BanII	GRGCYC	1 cut(s)	607
BauI	CACGAG	2 cut(s)	414, 699
BbsI	GAAGAC	2 cut(s)	183, 740
Bbv12I	GWGCWC	1 cut(s)	607
BbvI	GCAGC	3 cut(s)	226, 638, 703
BccI	CCATC	3 cut(s)	35, 451, 544
BceAI	ACGGC	1 cut(s)	639
BciT130I	CCWGG	1 cut(s)	660
BclI	TGATCA	1 cut(s)	390
BcoDI	GTCTC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	315
BisI	GCNGC	3 cut(s)	240, 652, 717
BlsI	GCNGC	3 cut(s)	241, 653, 718
Bme1390I	CCNGG	1 cut(s)	660
Bme18I	GGWCC	2 cut(s)	6, 727
BmeRI	GACNNNNNGTC	1 cut(s)	153
BmgT120I	GGNCC	3 cut(s)	6, 500, 727
BmiI	GGNNCC	3 cut(s)	74, 728, 729
BmrFI	CCNGG	1 cut(s)	660
BmsI	GCATC	3 cut(s)	97, 226, 685
BpiI	GAAGAC	2 cut(s)	183, 740
BpmI	CTGGAG	1 cut(s)	591
BpuEI	CTTGAG	2 cut(s)	281, 384
BsaBI	GATNNNNATC	1 cut(s)	535
BsaJI	CCNNGG	1 cut(s)	659
BsaWI	WCCGGW	1 cut(s)	29
BsaXI	ACNNNNNCTCC	2 cut(s)	594, 624
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 94, 221
Bse1I	ACTGG	3 cut(s)	146, 341, 608
Bse8I	GATNNNNATC	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	1 cut(s)	659
BseGI	GGATG	4 cut(s)	46, 230, 326, 536
BseJI	GATNNNNATC	1 cut(s)	535
BseLI	CCNNNNNNNGG	3 cut(s)	36, 94, 221
BseNI	ACTGG	3 cut(s)	146, 341, 608
BseXI	GCAGC	3 cut(s)	226, 638, 703
BshFI	GGCC	1 cut(s)	502
BsiHKAI	GWGCWC	1 cut(s)	607
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	141, 740
BslI	CCNNNNNNNGG	3 cut(s)	36, 94, 221
BsmAI	GTCTC	1 cut(s)	417
BsmFI	GGGAC	2 cut(s)	141, 740
BsmI	GAATGC	1 cut(s)	255
BsnI	GGCC	1 cut(s)	502
Bsp1286I	GDGCHC	1 cut(s)	607
Bsp143I	GATC	2 cut(s)	390, 733
BspACI	CCGC	2 cut(s)	566, 600
BspANI	GGCC	1 cut(s)	502
BspLI	GGNNCC	3 cut(s)	74, 728, 729
BsrI	ACTGG	3 cut(s)	146, 341, 608
BssECI	CCNNGG	1 cut(s)	659
BssMI	GATC	2 cut(s)	390, 733
BssSI	CACGAG	2 cut(s)	414, 699
Bst2BI	CACGAG	2 cut(s)	414, 699
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	2 cut(s)	220, 492
BstC8I	GCNNGC	2 cut(s)	566, 798
BstDEI	CTNAG	1 cut(s)	473
BstF5I	GGATG	4 cut(s)	46, 230, 326, 536
BstKTI	GATC	2 cut(s)	393, 736
BstMAI	GTCTC	1 cut(s)	417
BstMBI	GATC	2 cut(s)	390, 733
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 574
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	1 cut(s)	658
BstV1I	GCAGC	3 cut(s)	226, 638, 703
BstV2I	GAAGAC	2 cut(s)	183, 740
BsuRI	GGCC	1 cut(s)	502
BtsCI	GGATG	4 cut(s)	46, 230, 326, 536
BtsIMutI	CAGTG	3 cut(s)	348, 497, 615
Cac8I	GCNNGC	2 cut(s)	566, 798
Cfr13I	GGNCC	3 cut(s)	6, 500, 727
Csp6I	GTAC	2 cut(s)	593, 791
CviAII	CATG	2 cut(s)	643, 774
CviJI	RGCY	9 cut(s)	208, 233, 502, 577, 605, 651, 716, 810, 824
CviKI_1	RGCY	9 cut(s)	208, 233, 502, 577, 605, 651, 716, 810, 824
CviQI	GTAC	2 cut(s)	593, 791
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	2 cut(s)	392, 735
DpnII	GATC	2 cut(s)	390, 733
DriI	GACNNNNNGTC	1 cut(s)	153
Eam1105I	GACNNNNNGTC	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	615
Ecl136II	GAGCTC	1 cut(s)	605
Eco24I	GRGCYC	1 cut(s)	607
Eco47I	GGWCC	2 cut(s)	6, 727
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	711
EcoICRI	GAGCTC	1 cut(s)	605
EcoO109I	RGGNCCY	1 cut(s)	727
EcoRII	CCWGG	1 cut(s)	658
EcoT38I	GRGCYC	1 cut(s)	607
FaeI	CATG	2 cut(s)	646, 777
FaqI	GGGAC	2 cut(s)	141, 740
FatI	CATG	2 cut(s)	642, 773
FauI	CCCGC	1 cut(s)	573
FbaI	TGATCA	1 cut(s)	390
Fnu4HI	GCNGC	3 cut(s)	240, 652, 717
FokI	GGATG	4 cut(s)	53, 237, 333, 523
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	3 cut(s)	240, 652, 717
FspBI	CTAG	1 cut(s)	315
GluI	GCNGC	3 cut(s)	240, 652, 717
GsuI	CTGGAG	1 cut(s)	591
HaeIII	GGCC	1 cut(s)	502
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	2 cut(s)	646, 777
HindIII	AAGCTT	3 cut(s)	575, 808, 822
HinfI	GANTC	5 cut(s)	148, 410, 436, 469, 544
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	44, 445
Hpy166II	GTNNAC	3 cut(s)	283, 488, 704
Hpy188I	TCNGA	3 cut(s)	10, 509, 691
Hpy188III	TCNNGA	2 cut(s)	260, 401
Hpy8I	GTNNAC	3 cut(s)	283, 488, 704
Hpy99I	CGWCG	1 cut(s)	805
HpyAV	CCTTC	1 cut(s)	62
HpyCH4III	ACNGT	2 cut(s)	220, 492
HpyCH4IV	ACGT	1 cut(s)	803
HpyCH4V	TGCA	2 cut(s)	305, 466
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 574
HpyF3I	CTNAG	1 cut(s)	473
HpySE526I	ACGT	1 cut(s)	803
Hsp92II	CATG	2 cut(s)	646, 777
KflI	GGGWCCC	1 cut(s)	727
Ksp22I	TGATCA	1 cut(s)	390
Kzo9I	GATC	2 cut(s)	390, 733
LmnI	GCTCC	4 cut(s)	50, 517, 602, 610
Lsp1109I	GCAGC	3 cut(s)	226, 638, 703
LweI	GCATC	3 cut(s)	97, 226, 685
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	1 cut(s)	803
MalI	GATC	2 cut(s)	392, 735
MboI	GATC	2 cut(s)	390, 733
MboII	GAAGA	4 cut(s)	188, 466, 704, 740
MhlI	GDGCHC	1 cut(s)	607
MluCI	AATT	3 cut(s)	11, 426, 521
MlyI	GAGTC	3 cut(s)	142, 419, 478
MmeI	TCCRAC	2 cut(s)	202, 351
MnlI	CCTC	5 cut(s)	118, 258, 340, 408, 414
MseI	TTAA	4 cut(s)	129, 626, 806, 829
MslI	CAYNNNNRTG	2 cut(s)	23, 772
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	660
Mva1269I	GAATGC	1 cut(s)	255
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	2 cut(s)	239, 574
NdeII	GATC	2 cut(s)	390, 733
NlaIII	CATG	2 cut(s)	646, 777
NlaIV	GGNNCC	3 cut(s)	74, 728, 729
PctI	GAATGC	1 cut(s)	255
PfeI	GAWTC	2 cut(s)	436, 544
PkrI	GCNGC	3 cut(s)	241, 653, 718
PleI	GAGTC	3 cut(s)	142, 418, 477
PpsI	GAGTC	3 cut(s)	142, 418, 477
PpuMI	RGGWCCY	1 cut(s)	727
Psp124BI	GAGCTC	1 cut(s)	607
Psp5II	RGGWCCY	1 cut(s)	727
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspN4I	GGNNCC	3 cut(s)	74, 728, 729
PspPI	GGNCC	3 cut(s)	6, 500, 727
PspPPI	RGGWCCY	1 cut(s)	727
RsaI	GTAC	2 cut(s)	594, 792
RsaNI	GTAC	2 cut(s)	593, 791
RseI	CAYNNNNRTG	2 cut(s)	23, 772
SacI	GAGCTC	1 cut(s)	607
SaqAI	TTAA	4 cut(s)	129, 626, 806, 829
SatI	GCNGC	3 cut(s)	240, 652, 717
Sau3AI	GATC	2 cut(s)	390, 733
Sau96I	GGNCC	3 cut(s)	6, 500, 727
SchI	GAGTC	3 cut(s)	142, 419, 478
ScrFI	CCNGG	1 cut(s)	660
SduI	GDGCHC	1 cut(s)	607
SfaNI	GCATC	3 cut(s)	97, 226, 685
SinI	GGWCC	2 cut(s)	6, 727
SmiMI	CAYNNNNRTG	2 cut(s)	23, 772
SmlI	CTYRAG	2 cut(s)	260, 399
SmoI	CTYRAG	2 cut(s)	260, 399
Sse9I	AATT	3 cut(s)	11, 426, 521
SsiI	CCGC	2 cut(s)	566, 600
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	658
TaaI	ACNGT	2 cut(s)	220, 492
TaiI	ACGT	1 cut(s)	806
TasI	AATT	3 cut(s)	11, 426, 521
TatI	WGTACW	1 cut(s)	790
TfiI	GAWTC	2 cut(s)	436, 544
Tru1I	TTAA	4 cut(s)	129, 626, 806, 829
Tru9I	TTAA	4 cut(s)	129, 626, 806, 829
TscAI	CASTG	3 cut(s)	348, 497, 615
TseI	GCWGC	3 cut(s)	239, 651, 716
TspDTI	ATGAA	3 cut(s)	467, 675, 740
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	3 cut(s)	348, 497, 615
VpaK11BI	GGWCC	2 cut(s)	6, 727
XapI	RAATTY	1 cut(s)	11
XspI	CTAG	1 cut(s)	315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.