Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

19575870 .. 19576325

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0138200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTTGGTGTTGGAGGACTACGACGACATCAACTCGTTAGAGGCGGTGTCTCTTCATCATCTGAAGGTTTGGGTGGTGGTGAAGGGGCTGAGAATGGCCATGCGGAATGAGCGTGCCCTAAACCTCCTCAGGAATGATCTGGGGGTTTTTGTTTGGGTTGACCTGACGGCGGTGCAGCGCAAGGATCCGATCCAGAGCTATGAAGGTGGGGGTTGTGGTAAGGGTTTGGTGGCCGTGTCGCAATCGGGTTCGGAACCGGAGGAGAGCTTGCTAGCCTCGGTGGCGACTGCGGTGGGGATGGAGTCGACTGGGATAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

106

Amino Acids

11.46

Weight (kDa)

4.85

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	305
AciI	CCGC	4 cut(s)	44, 103, 170, 290
AclWI	GGATC	3 cut(s)	179, 184, 192
AcoI	YGGCCR	2 cut(s)	96, 231
AcuI	CTGAAG	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	169
AluBI	AGCT	2 cut(s)	198, 267
AluI	AGCT	2 cut(s)	198, 267
Alw26I	GTCTC	1 cut(s)	54
AlwI	GGATC	3 cut(s)	179, 184, 192
AoxI	GGCC	2 cut(s)	96, 231
ApeKI	GCWGC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	180
AsuHPI	GGTGA	1 cut(s)	91
AsuNHI	GCTAGC	1 cut(s)	271
AxyI	CCTNAGG	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	118
BalI	TGGCCA	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	2 cut(s)	183, 218
BcoDI	GTCTC	1 cut(s)	54
BfaI	CTAG	1 cut(s)	272
BglI	GCCNNNNNGGC	1 cut(s)	281
BisI	GCNGC	1 cut(s)	176
BlsI	GCNGC	1 cut(s)	177
BmiI	GGNNCC	2 cut(s)	186, 255
BmrI	ACTGGG	1 cut(s)	318
BmtI	GCTAGC	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	256
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	313
Bse21I	CCTNAGG	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	2 cut(s)	80, 142
BseNI	ACTGG	1 cut(s)	313
BseRI	GAGGAG	2 cut(s)	116, 275
BseSI	GKGCMC	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	187
BsgI	GTGCAG	1 cut(s)	194
BshFI	GGCC	2 cut(s)	98, 233
BsiSI	CCGG	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmAI	GTCTC	1 cut(s)	54
BsnI	GGCC	2 cut(s)	98, 233
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp143I	GATC	3 cut(s)	136, 184, 189
BspACI	CCGC	4 cut(s)	44, 103, 170, 290
BspANI	GGCC	2 cut(s)	98, 233
BspCNI	CTCAG	2 cut(s)	81, 141
BspLI	GGNNCC	2 cut(s)	186, 255
BspOI	GCTAGC	1 cut(s)	275
BspPI	GGATC	3 cut(s)	179, 184, 192
BsrI	ACTGG	1 cut(s)	313
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	136, 184, 189
Bst6I	CTCTTC	1 cut(s)	57
BstC8I	GCNNGC	3 cut(s)	114, 269, 273
BstDEI	CTNAG	2 cut(s)	89, 128
BstF5I	GGATG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	180
BstKTI	GATC	3 cut(s)	139, 187, 192
BstMAI	GTCTC	1 cut(s)	54
BstMBI	GATC	3 cut(s)	136, 184, 189
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 281
BstSLI	GKGCMC	1 cut(s)	118
BstV1I	GCAGC	1 cut(s)	187
BstX2I	RGATCY	1 cut(s)	184
BstYI	RGATCY	1 cut(s)	184
Bsu36I	CCTNAGG	1 cut(s)	128
BsuRI	GGCC	2 cut(s)	98, 233
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	3 cut(s)	114, 269, 273
CfoI	GCGC	1 cut(s)	180
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	6 cut(s)	88, 98, 198, 233, 267, 275
CviKI_1	RGCY	6 cut(s)	88, 98, 198, 233, 267, 275
DdeI	CTNAG	2 cut(s)	89, 128
DpnI	GATC	3 cut(s)	138, 186, 191
DpnII	GATC	3 cut(s)	136, 184, 189
EaeI	YGGCCR	2 cut(s)	96, 231
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	128
FaeI	CATG	1 cut(s)	103
FaiI	YATR	2 cut(s)	101, 201
FatI	CATG	1 cut(s)	99
FblI	GTMKAC	1 cut(s)	305
Fnu4HI	GCNGC	1 cut(s)	176
FokI	GGATG	1 cut(s)	310
Fsp4HI	GCNGC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	179
GluI	GCNGC	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	98, 233
HapII	CCGG	1 cut(s)	257
HhaI	GCGC	1 cut(s)	180
Hin1II	CATG	1 cut(s)	103
Hin6I	GCGC	1 cut(s)	178
HinP1I	GCGC	1 cut(s)	178
HincII	GTYRAC	2 cut(s)	160, 306
HindII	GTYRAC	2 cut(s)	160, 306
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	257
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	160, 306
Hpy188I	TCNGA	3 cut(s)	63, 189, 253
Hpy188III	TCNNGA	2 cut(s)	130, 193
Hpy8I	GTNNAC	2 cut(s)	160, 306
Hpy99I	CGWCG	1 cut(s)	26
HpyAV	CCTTC	3 cut(s)	58, 76, 197
HpyCH4V	TGCA	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 281
HpyF3I	CTNAG	2 cut(s)	89, 128
Hsp92II	CATG	1 cut(s)	103
HspAI	GCGC	1 cut(s)	178
Kzo9I	GATC	3 cut(s)	136, 184, 189
LpnPI	CCDG	6 cut(s)	115, 125, 176, 206, 270, 294
Lsp1109I	GCAGC	1 cut(s)	187
MaeI	CTAG	1 cut(s)	272
MalI	GATC	3 cut(s)	138, 186, 191
MboI	GATC	3 cut(s)	136, 184, 189
MboII	GAAGA	1 cut(s)	44
MflI	RGATCY	1 cut(s)	184
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	98
MluNI	TGGCCA	1 cut(s)	98
MlyI	GAGTC	1 cut(s)	311
MnlI	CCTC	6 cut(s)	7, 34, 134, 137, 253, 286
Mox20I	TGGCCA	1 cut(s)	98
MscI	TGGCCA	1 cut(s)	98
Msp20I	TGGCCA	1 cut(s)	98
MspI	CCGG	1 cut(s)	257
MwoI	GCNNNNNNNGC	2 cut(s)	109, 281
NdeII	GATC	3 cut(s)	136, 184, 189
NheI	GCTAGC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	186, 255
PkrI	GCNGC	1 cut(s)	177
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
PspN4I	GGNNCC	2 cut(s)	186, 255
PsuI	RGATCY	1 cut(s)	184
SalI	GTCGAC	1 cut(s)	304
SatI	GCNGC	1 cut(s)	176
Sau3AI	GATC	3 cut(s)	136, 184, 189
SchI	GAGTC	1 cut(s)	311
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	6 cut(s)	69, 126, 165, 200, 208, 269
SsiI	CCGC	4 cut(s)	44, 103, 170, 290
SspMI	CTAG	1 cut(s)	272
TaqI	TCGA	1 cut(s)	305
TseI	GCWGC	1 cut(s)	175
TspDTI	ATGAA	2 cut(s)	44, 216
XmiI	GTMKAC	1 cut(s)	305
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.