Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002082.1

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Forward (+)

207506 .. 211960

Gene Structure 4455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002082.1_g000049.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggggtcatcaaaggaagaaaaagcaaaagagagtgaaaatgggttatcataccttgagttatttggaaaatcagcctcaagtgataccatagtttttgttttgtttttcgtcgctttcaggcagagcagggagtgggaggttaaggttttcgactggcagactcaatgtcccactcttgctgacccagaagaccaagttcttgcctacaagacgatagagctacttcccatagttggatgtgaagccgatgctgctacacggtacaacattcttgagaggaatgtgggtggtgtgaacaacaaagtttctgcctttgcgtatcagtctagtggatgttatgtgtctgttttgccagtggagcataagagtttgaataagttgttggaagtagagtattgcttgctcaatcctcaagataaggagtctcgtgtgaggataattcaggtgattcgcatagacaatatgaagatggtattgcagagtcttagagttctttgtgaacagtggtatgggccattcagaaatgtggagcaattaggcggatgtgccatccgtgattctgctttttcttctacgcccgcattggaagcttcaaaagttgttggtacttggcggagctccagtgctgttgccacttttaatggttctcgaaatcgtggtctggatttgccagaaatgtgcccggtgaatgggatggctatggagcaaacttcacaaccgaagggaacccgattgaactcccagaaagggttgtgtctgatgcttacagggagtgggaggttaaggttttcgactagcagactcaatgtcccactcttgctgacccagaagaccaagttcttgcctataagacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

286

Amino Acids

31.94

Weight (kDa)

8.74

Isoelectric Point (pI)

46.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	543, 582, 616
AfaI	GTAC	2 cut(s)	266, 610
AfiI	CCNNNNNNNGG	3 cut(s)	236, 692, 750
AgsI	TTSAA	3 cut(s)	376, 597, 739
AhdI	GACNNNNNGTC	2 cut(s)	168, 809
AjuI	GAANNNNNNNTTGG	2 cut(s)	368, 400
AluBI	AGCT	3 cut(s)	223, 593, 621
AluI	AGCT	3 cut(s)	223, 593, 621
Alw21I	GWGCWC	1 cut(s)	623
Alw26I	GTCTC	1 cut(s)	432
AoxI	GGCC	1 cut(s)	515
ApeKI	GCWGC	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	646, 678
AspS9I	GGNCC	1 cut(s)	515
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	460, 700
BaeGI	GKGCMC	1 cut(s)	686
BaeI	ACNNNNGTAYC	2 cut(s)	78, 111
BanII	GRGCYC	1 cut(s)	623
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	2 cut(s)	198, 839
Bbv12I	GWGCWC	1 cut(s)	623
BbvI	GCAGC	1 cut(s)	241
BccI	CCATC	3 cut(s)	466, 560, 691
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	1 cut(s)	432
BfaI	CTAG	2 cut(s)	330, 798
BisI	GCNGC	1 cut(s)	255
BlsI	GCNGC	1 cut(s)	256
Bme1390I	CCNGG	1 cut(s)	686
BmeRI	GACNNNNNGTC	2 cut(s)	168, 809
BmgT120I	GGNCC	1 cut(s)	515
BmiI	GGNNCC	1 cut(s)	730
BmrFI	CCNGG	1 cut(s)	686
BmsI	GCATC	2 cut(s)	241, 753
BpiI	GAAGAC	2 cut(s)	198, 839
BpmI	CTGGAG	1 cut(s)	607
BpuEI	CTTGAG	4 cut(s)	64, 77, 296, 399
BpuMI	CCSGG	1 cut(s)	686
BsaXI	ACNNNNNCTCC	2 cut(s)	610, 640
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 692, 750
Bse1I	ACTGG	3 cut(s)	161, 356, 624
BseGI	GGATG	5 cut(s)	245, 341, 551, 552, 702
BseLI	CCNNNNNNNGG	3 cut(s)	236, 692, 750
BseNI	ACTGG	3 cut(s)	161, 356, 624
BseSI	GKGCMC	1 cut(s)	686
BseXI	GCAGC	1 cut(s)	241
BshFI	GGCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	623
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	2 cut(s)	156, 797
BslI	CCNNNNNNNGG	3 cut(s)	236, 692, 750
BsmAI	GTCTC	1 cut(s)	432
BsmFI	GGGAC	2 cut(s)	156, 797
BsnI	GGCC	1 cut(s)	517
Bsp1286I	GDGCHC	2 cut(s)	623, 686
BspACI	CCGC	3 cut(s)	543, 582, 616
BspANI	GGCC	1 cut(s)	517
BspLI	GGNNCC	1 cut(s)	730
BsrI	ACTGG	3 cut(s)	161, 356, 624
BssSI	CACGAG	1 cut(s)	429
Bst2BI	CACGAG	1 cut(s)	429
Bst4CI	ACNGT	2 cut(s)	264, 507
BstC8I	GCNNGC	2 cut(s)	404, 582
BstDEI	CTNAG	1 cut(s)	488
BstF5I	GGATG	5 cut(s)	245, 341, 551, 552, 702
BstMAI	GTCTC	1 cut(s)	432
BstMWI	GCNNNNNNNGC	3 cut(s)	254, 361, 590
BstSCI	CCNGG	1 cut(s)	684
BstSLI	GKGCMC	1 cut(s)	686
BstV1I	GCAGC	1 cut(s)	241
BstV2I	GAAGAC	2 cut(s)	198, 839
BsuRI	GGCC	1 cut(s)	517
BtsCI	GGATG	5 cut(s)	245, 341, 551, 552, 702
BtsIMutI	CAGTG	3 cut(s)	363, 512, 631
Cac8I	GCNNGC	2 cut(s)	404, 582
Cfr13I	GGNCC	1 cut(s)	515
Csp6I	GTAC	2 cut(s)	265, 609
CviJI	RGCY	7 cut(s)	77, 223, 248, 517, 593, 621, 701
CviKI_1	RGCY	7 cut(s)	77, 223, 248, 517, 593, 621, 701
CviQI	GTAC	2 cut(s)	265, 609
DdeI	CTNAG	1 cut(s)	488
DriI	GACNNNNNGTC	2 cut(s)	168, 809
Eam1105I	GACNNNNNGTC	2 cut(s)	168, 809
EciI	GGCGGA	2 cut(s)	558, 631
Ecl136II	GAGCTC	1 cut(s)	621
Eco24I	GRGCYC	1 cut(s)	623
Eco53kI	GAGCTC	1 cut(s)	621
EcoICRI	GAGCTC	1 cut(s)	621
EcoT38I	GRGCYC	1 cut(s)	623
FaqI	GGGAC	2 cut(s)	156, 797
FauI	CCCGC	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	255
FokI	GGATG	5 cut(s)	252, 348, 539, 558, 709
FriOI	GRGCYC	1 cut(s)	623
Fsp4HI	GCNGC	1 cut(s)	255
FspBI	CTAG	2 cut(s)	330, 798
GluI	GCNGC	1 cut(s)	255
GsuI	CTGGAG	1 cut(s)	607
HaeIII	GGCC	1 cut(s)	517
HapII	CCGG	1 cut(s)	686
HindIII	AAGCTT	1 cut(s)	591
HinfI	GANTC	6 cut(s)	163, 425, 451, 484, 560, 804
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	2 cut(s)	460, 700
Hpy166II	GTNNAC	2 cut(s)	298, 503
Hpy188I	TCNGA	2 cut(s)	524, 762
Hpy188III	TCNNGA	4 cut(s)	275, 416, 651, 665
Hpy8I	GTNNAC	2 cut(s)	298, 503
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	718
HpyCH4III	ACNGT	2 cut(s)	264, 507
HpyCH4V	TGCA	1 cut(s)	481
HpyF10VI	GCNNNNNNNGC	3 cut(s)	254, 361, 590
HpyF3I	CTNAG	1 cut(s)	488
LmnI	GCTCC	5 cut(s)	361, 532, 618, 626, 706
Lsp1109I	GCAGC	1 cut(s)	241
LweI	GCATC	2 cut(s)	241, 753
MaeI	CTAG	2 cut(s)	330, 798
MboII	GAAGA	5 cut(s)	29, 203, 481, 564, 844
MhlI	GDGCHC	2 cut(s)	623, 686
MluCI	AATT	2 cut(s)	441, 536
MlyI	GAGTC	4 cut(s)	157, 434, 493, 798
MmeI	TCCRAC	2 cut(s)	217, 366
MnlI	CCTC	6 cut(s)	88, 133, 273, 423, 429, 774
MseI	TTAA	3 cut(s)	144, 642, 785
MspI	CCGG	1 cut(s)	686
MspR9I	CCNGG	1 cut(s)	686
MwoI	GCNNNNNNNGC	3 cut(s)	254, 361, 590
NciI	CCSGG	1 cut(s)	686
NlaIV	GGNNCC	1 cut(s)	730
PfeI	GAWTC	2 cut(s)	451, 560
PkrI	GCNGC	1 cut(s)	256
PleI	GAGTC	4 cut(s)	157, 433, 492, 798
PpsI	GAGTC	4 cut(s)	157, 433, 492, 798
Psp124BI	GAGCTC	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	730
PspPI	GGNCC	1 cut(s)	515
RsaI	GTAC	2 cut(s)	266, 610
RsaNI	GTAC	2 cut(s)	265, 609
SacI	GAGCTC	1 cut(s)	623
SaqAI	TTAA	3 cut(s)	144, 642, 785
SatI	GCNGC	1 cut(s)	255
Sau96I	GGNCC	1 cut(s)	515
SchI	GAGTC	4 cut(s)	157, 434, 493, 798
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	2 cut(s)	623, 686
SetI	ASST	9 cut(s)	57, 144, 150, 225, 450, 595, 623, 785, 791
SfaNI	GCATC	2 cut(s)	241, 753
SmlI	CTYRAG	4 cut(s)	56, 79, 275, 414
SmoI	CTYRAG	4 cut(s)	56, 79, 275, 414
Sse9I	AATT	2 cut(s)	441, 536
SsiI	CCGC	3 cut(s)	543, 582, 616
SspMI	CTAG	2 cut(s)	330, 798
SstI	GAGCTC	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	684
TaaI	ACNGT	2 cut(s)	264, 507
TaqI	TCGA	3 cut(s)	153, 652, 794
TasI	AATT	2 cut(s)	441, 536
TfiI	GAWTC	2 cut(s)	451, 560
Tru1I	TTAA	3 cut(s)	144, 642, 785
Tru9I	TTAA	3 cut(s)	144, 642, 785
TscAI	CASTG	3 cut(s)	363, 512, 631
TseI	GCWGC	1 cut(s)	254
TspDTI	ATGAA	1 cut(s)	482
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	3 cut(s)	363, 512, 631
XspI	CTAG	2 cut(s)	330, 798

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.