Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012869.1

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

17213 .. 19540

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012869.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

atggctttaaacagtgtaatcccccacactagagctttgagcttaagcacttccttgccttcttctcctcataaaaagccttcaagccctcaatttccacacccacaacatcgtcgcaccgctgctcaaattgtccagagcgctgcctcttcctctaccaagaccagcctccctgaccttgaacaccaacttcatgaggaggatcgcagtaacagcttcaatcccacctccacttctgcctctgcgtggtccgaatttgccagaaatgtgtccggtgaatgggacggctatggagcagacttcacaaccgaagggaaaccaattgaactcccagaaagggttgtgcctgatgcttacagggagtgggaggttaaggttttcgactggcagacacaatgtcccactcttgctgacccagaagaccaagttcttgcctacaagaccatagagctacttcccacagttggatgtgaagccgatgctgctacgcggtacagcatccttgagaggaatgtgggtggtgtgaacaacaaagtttctgcctttgcgtatcaggctagtggatgttatgtgtctgttttgccagtggaggataagagtttgaataagttgttggaagtagagtattgcttgatcaatcctcaagataaggagtctcgtgtgaggataattcaggtgattcgcatagacaatatgaagatggtattgcagagtcttagagttctttgtgaacagtggtacgggccattcagaaatggggagcaattaggtggatgtgccatccgtgattctgcttttgcttctacgcccgcattggaagcttcaaaagttgttggtacttggcagagctccagtgctgttgccaattttaatggttctcaaaataactttcaacaactttcaggggacagtaagcagaactcagtaagagatgaaagtggtctcatattgcttcccaagcaattgtggtgttcagtaaaagaaggtaaagatggcagtacttacagcgaggtgggatggctatttgatgaaggacgtgccatcacatcaagatgcaccttctcaagcgcagcaactctgaaggaaatctcagtagcctctgaaactgtagcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

371

Amino Acids

40.78

Weight (kDa)

5.32

Isoelectric Point (pI)

45.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	490
AciI	CCGC	3 cut(s)	120, 490, 810
AclWI	GGATC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	1100
AfaI	GTAC	4 cut(s)	494, 740, 838, 1000
AfeI	AGCGCT	1 cut(s)	142
AfiI	CCNNNNNNNGG	4 cut(s)	246, 279, 337, 464
AflII	CTTAAG	1 cut(s)	43
AgsI	TTSAA	7 cut(s)	84, 182, 220, 326, 604, 825, 893
AhdI	GACNNNNNGTC	1 cut(s)	396
AjiI	CACGTC	1 cut(s)	1037
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
AluBI	AGCT	7 cut(s)	35, 42, 216, 451, 821, 849, 1112
AluI	AGCT	7 cut(s)	35, 42, 216, 451, 821, 849, 1112
Alw21I	GWGCWC	1 cut(s)	851
Alw26I	GTCTC	2 cut(s)	660, 947
AlwI	GGATC	1 cut(s)	210
Aor51HI	AGCGCT	1 cut(s)	142
AoxI	GGCC	1 cut(s)	743
ApeKI	GCWGC	4 cut(s)	122, 143, 482, 1070
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	2 cut(s)	143, 1070
AspS9I	GGNCC	2 cut(s)	249, 743
AsuHPI	GGTGA	2 cut(s)	287, 688
AvaII	GGWCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	851
BauI	CACGAG	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	851
BbvI	GCAGC	4 cut(s)	109, 130, 469, 1082
BccI	CCATC	5 cut(s)	694, 788, 986, 1011, 1049
BceAI	ACGGC	1 cut(s)	301
BclI	TGATCA	1 cut(s)	633
BcoDI	GTCTC	2 cut(s)	660, 947
BfaI	CTAG	2 cut(s)	30, 558
BfmI	CTRYAG	1 cut(s)	1107
BfoI	RGCGCY	1 cut(s)	144
BfrI	CTTAAG	1 cut(s)	43
BisI	GCNGC	4 cut(s)	123, 144, 483, 1071
BlsI	GCNGC	4 cut(s)	124, 145, 484, 1072
BmcAI	AGTACT	1 cut(s)	1000
Bme18I	GGWCC	1 cut(s)	249
BmeRI	GACNNNNNGTC	1 cut(s)	396
BmgBI	CACGTC	1 cut(s)	1037
BmgT120I	GGNCC	2 cut(s)	249, 743
BmsI	GCATC	4 cut(s)	340, 469, 507, 1043
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	1 cut(s)	835
BpuEI	CTTGAG	3 cut(s)	524, 627, 1048
BsaI	GGTCTC	1 cut(s)	947
BsaWI	WCCGGW	1 cut(s)	272
Bsc4I	CCNNNNNNNGG	4 cut(s)	246, 279, 337, 464
Bse1I	ACTGG	3 cut(s)	389, 584, 852
BseGI	GGATG	6 cut(s)	473, 498, 569, 779, 780, 1022
BseLI	CCNNNNNNNGG	4 cut(s)	246, 279, 337, 464
BseMII	CTCAG	2 cut(s)	936, 1104
BseNI	ACTGG	3 cut(s)	389, 584, 852
BseRI	GAGGAG	2 cut(s)	57, 212
BseXI	GCAGC	4 cut(s)	109, 130, 469, 1082
Bsh1236I	CGCG	1 cut(s)	490
BshFI	GGCC	1 cut(s)	745
BsiHKAI	GWGCWC	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	3 cut(s)	296, 384, 920
BslI	CCNNNNNNNGG	4 cut(s)	246, 279, 337, 464
BsmAI	GTCTC	2 cut(s)	660, 947
BsmFI	GGGAC	3 cut(s)	296, 384, 920
BsnI	GGCC	1 cut(s)	745
Bso31I	GGTCTC	1 cut(s)	947
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp143I	GATC	2 cut(s)	202, 633
BspACI	CCGC	3 cut(s)	120, 490, 810
BspANI	GGCC	1 cut(s)	745
BspCNI	CTCAG	2 cut(s)	935, 1103
BspFNI	CGCG	1 cut(s)	490
BspHI	TCATGA	1 cut(s)	193
BspPI	GGATC	1 cut(s)	210
BspTI	CTTAAG	1 cut(s)	43
BspTNI	GGTCTC	1 cut(s)	947
BsrI	ACTGG	3 cut(s)	389, 584, 852
BssMI	GATC	2 cut(s)	202, 633
BssSI	CACGAG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	657
Bst4CI	ACNGT	5 cut(s)	14, 463, 735, 911, 1108
Bst6I	CTCTTC	1 cut(s)	154
BstAFI	CTTAAG	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	3 cut(s)	716, 922, 1090
BstF5I	GGATG	6 cut(s)	473, 498, 569, 779, 780, 1022
BstFNI	CGCG	1 cut(s)	490
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	2 cut(s)	143, 1070
BstKTI	GATC	2 cut(s)	205, 636
BstMAI	GTCTC	2 cut(s)	660, 947
BstMBI	GATC	2 cut(s)	202, 633
BstMWI	GCNNNNNNNGC	5 cut(s)	213, 482, 554, 818, 958
BstSFI	CTRYAG	1 cut(s)	1107
BstUI	CGCG	1 cut(s)	490
BstV1I	GCAGC	4 cut(s)	109, 130, 469, 1082
BstV2I	GAAGAC	1 cut(s)	426
BsuRI	GGCC	1 cut(s)	745
BtrI	CACGTC	1 cut(s)	1037
BtsCI	GGATG	6 cut(s)	473, 498, 569, 779, 780, 1022
BtsIMutI	CAGTG	4 cut(s)	19, 591, 740, 859
Cac8I	GCNNGC	1 cut(s)	810
CciI	TCATGA	1 cut(s)	193
CfoI	GCGC	2 cut(s)	143, 1070
Cfr13I	GGNCC	2 cut(s)	249, 743
Csp6I	GTAC	4 cut(s)	493, 739, 837, 999
CviAII	CATG	1 cut(s)	194
CviQI	GTAC	4 cut(s)	493, 739, 837, 999
DdeI	CTNAG	3 cut(s)	716, 922, 1090
DpnI	GATC	2 cut(s)	204, 635
DpnII	GATC	2 cut(s)	202, 633
DraI	TTTAAA	1 cut(s)	9
DriI	GACNNNNNGTC	1 cut(s)	396
Eam1104I	CTCTTC	1 cut(s)	154
Eam1105I	GACNNNNNGTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	851
Eco31I	GGTCTC	1 cut(s)	947
Eco47I	GGWCC	1 cut(s)	249
Eco47III	AGCGCT	1 cut(s)	142
Eco53kI	GAGCTC	1 cut(s)	849
Eco57I	CTGAAG	1 cut(s)	1100
EcoICRI	GAGCTC	1 cut(s)	849
EcoT38I	GRGCYC	1 cut(s)	851
FaeI	CATG	1 cut(s)	197
FaiI	YATR	8 cut(s)	72, 195, 291, 446, 570, 686, 695, 947
FaqI	GGGAC	3 cut(s)	296, 384, 920
FatI	CATG	1 cut(s)	193
FauI	CCCGC	1 cut(s)	817
FbaI	TGATCA	1 cut(s)	633
Fnu4HI	GCNGC	4 cut(s)	123, 144, 483, 1071
FokI	GGATG	6 cut(s)	480, 485, 576, 767, 786, 1029
FriOI	GRGCYC	1 cut(s)	851
Fsp4HI	GCNGC	4 cut(s)	123, 144, 483, 1071
FspBI	CTAG	2 cut(s)	30, 558
GlaI	GCGC	2 cut(s)	142, 1069
GluI	GCNGC	4 cut(s)	123, 144, 483, 1071
GsuI	CTGGAG	1 cut(s)	835
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	1 cut(s)	745
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	2 cut(s)	143, 1070
Hin1II	CATG	1 cut(s)	197
Hin6I	GCGC	2 cut(s)	141, 1068
HinP1I	GCGC	2 cut(s)	141, 1068
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	4 cut(s)	653, 679, 712, 788
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	287, 688
Hpy166II	GTNNAC	2 cut(s)	526, 731
Hpy188I	TCNGA	4 cut(s)	253, 752, 1080, 1102
Hpy188III	TCNNGA	4 cut(s)	136, 194, 644, 1050
Hpy8I	GTNNAC	2 cut(s)	526, 731
Hpy99I	CGWCG	1 cut(s)	117
HpyAV	CCTTC	7 cut(s)	69, 90, 305, 977, 1025, 1069, 1075
HpyCH4III	ACNGT	5 cut(s)	14, 463, 735, 911, 1108
HpyCH4IV	ACGT	1 cut(s)	1036
HpyCH4V	TGCA	2 cut(s)	709, 1056
HpyF10VI	GCNNNNNNNGC	5 cut(s)	213, 482, 554, 818, 958
HpyF3I	CTNAG	3 cut(s)	716, 922, 1090
HpySE526I	ACGT	1 cut(s)	1036
Hsp92II	CATG	1 cut(s)	197
HspAI	GCGC	2 cut(s)	141, 1068
Ksp22I	TGATCA	1 cut(s)	633
Kzo9I	GATC	2 cut(s)	202, 633
LmnI	GCTCC	3 cut(s)	293, 760, 854
Lsp1109I	GCAGC	4 cut(s)	109, 130, 469, 1082
LweI	GCATC	4 cut(s)	340, 469, 507, 1043
MaeI	CTAG	2 cut(s)	30, 558
MaeII	ACGT	1 cut(s)	1036
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	2 cut(s)	204, 635
MboI	GATC	2 cut(s)	202, 633
MboII	GAAGA	4 cut(s)	54, 141, 431, 709
MfeI	CAATTG	2 cut(s)	321, 962
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	8 cut(s)	92, 129, 254, 321, 669, 764, 865, 962
MlyI	GAGTC	2 cut(s)	662, 721
MmeI	TCCRAC	2 cut(s)	445, 594
MseI	TTAA	4 cut(s)	8, 44, 372, 870
MslI	CAYNNNNRTG	1 cut(s)	1051
MspA1I	CMGCKG	1 cut(s)	122
MspCI	CTTAAG	1 cut(s)	43
MspI	CCGG	1 cut(s)	273
MunI	CAATTG	2 cut(s)	321, 962
MvnI	CGCG	1 cut(s)	490
MwoI	GCNNNNNNNGC	5 cut(s)	213, 482, 554, 818, 958
NdeII	GATC	2 cut(s)	202, 633
NlaIII	CATG	1 cut(s)	197
PagI	TCATGA	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	679, 788
PkrI	GCNGC	4 cut(s)	124, 145, 484, 1072
PleI	GAGTC	2 cut(s)	661, 720
PpsI	GAGTC	2 cut(s)	661, 720
Psp124BI	GAGCTC	1 cut(s)	851
PspPI	GGNCC	2 cut(s)	249, 743
RsaI	GTAC	4 cut(s)	494, 740, 838, 1000
RsaNI	GTAC	4 cut(s)	493, 739, 837, 999
RseI	CAYNNNNRTG	1 cut(s)	1051
SacI	GAGCTC	1 cut(s)	851
SaqAI	TTAA	4 cut(s)	8, 44, 372, 870
SatI	GCNGC	4 cut(s)	123, 144, 483, 1071
Sau3AI	GATC	2 cut(s)	202, 633
Sau96I	GGNCC	2 cut(s)	249, 743
ScaI	AGTACT	1 cut(s)	1000
SchI	GAGTC	2 cut(s)	662, 721
SduI	GDGCHC	1 cut(s)	851
SfaNI	GCATC	4 cut(s)	340, 469, 507, 1043
SfcI	CTRYAG	1 cut(s)	1107
SinI	GGWCC	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	1051
SmlI	CTYRAG	4 cut(s)	43, 503, 642, 1063
SmoI	CTYRAG	4 cut(s)	43, 503, 642, 1063
Sse9I	AATT	8 cut(s)	92, 129, 254, 321, 669, 764, 865, 962
SsiI	CCGC	3 cut(s)	120, 490, 810
SspMI	CTAG	2 cut(s)	30, 558
SstI	GAGCTC	1 cut(s)	851
TaaI	ACNGT	5 cut(s)	14, 463, 735, 911, 1108
TaiI	ACGT	1 cut(s)	1039
TaqI	TCGA	1 cut(s)	381
TasI	AATT	8 cut(s)	92, 129, 254, 321, 669, 764, 865, 962
TatI	WGTACW	1 cut(s)	998
TfiI	GAWTC	2 cut(s)	679, 788
Tru1I	TTAA	4 cut(s)	8, 44, 372, 870
Tru9I	TTAA	4 cut(s)	8, 44, 372, 870
TscAI	CASTG	4 cut(s)	19, 591, 740, 859
TseI	GCWGC	4 cut(s)	122, 143, 482, 1070
TspDTI	ATGAA	4 cut(s)	182, 710, 948, 1044
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	4 cut(s)	19, 591, 740, 859
Vha464I	CTTAAG	1 cut(s)	43
VpaK11BI	GGWCC	1 cut(s)	249
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	2 cut(s)	30, 558
ZrmI	AGTACT	1 cut(s)	1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.