Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001021.1

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

7290 .. 11878

Gene Structure 4589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001021.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atgctgattgactgggatactcacacatgggcacttgatagaattacattatacatctcatccaactttgcgagccataactccctcactcttatctttctcgatccctccgtcaaaagcttcgagaaatctcaaaccattaccagctcctccgccaaaatcaagtcattctccgtctccgagatcacaccccctcagctctccaacctctcaattgtcaaatcagccttgaccttcgccttcgccttcgccttggcctttgccttcgcctcctccttcgcctccgcctccgcctctgcctccgccagtgagccatttgaggcggagctccataaaaatgtgcccggtgaatgggatggctatggaacagacttcacaactgaagggaacccgattgaactcccacaaagggttgtgcctgatgcttacagggagtgggaggttaaggttttcgactggcagactcaatgtcccactcttgctgacccagaagaccaagttcttgcctataagacgatagagctacttcccacagttggatgtgaagtcgatgctgctacacggtacaacattcttgagaggaatgtgggtggtgtgaacaacaaagtttttgcctttgcgtatcagtctagtggatattatgtgtttgttttaccagtggaggataagagtttgaataagttgttggaggtagagtattgcttgatcaatcctcaagataaggagtctcatgtgaggataattcaggtgattcgcatagacaatatgaagatggtattgcagagtcttagagttctttgtgaacagtggtatgggccattcagaaatggggagcaattaggtggatgtgccatccatgattctgcttttgcttctacgcccgcattggaagcttcaaaagttgttggttcttggtggagctccagtgccgttgccacttttaatggttctcaaaatgatctccatgagaacctatttgaagagctgagcaattacagacagatcaagaccttgaaaatctgtgatactttggctgaccgcatgtcacaagagagggaaaatattgatcctatgggcgcaccattttctgcttctgctggcatatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

368

Amino Acids

40.9

Weight (kDa)

4.78

Isoelectric Point (pI)

36.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	153, 285, 291, 303, 323, 882, 1039
AclWI	GGATC	2 cut(s)	98, 1061
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	1 cut(s)	566
AfiI	CCNNNNNNNGG	3 cut(s)	351, 409, 536
AgsI	TTSAA	5 cut(s)	398, 676, 897, 980, 1015
AhdI	GACNNNNNGTC	2 cut(s)	468, 1042
AjuI	GAANNNNNNNTTGG	2 cut(s)	668, 700
AluBI	AGCT	8 cut(s)	120, 147, 199, 328, 523, 893, 921, 985
AluI	AGCT	8 cut(s)	120, 147, 199, 328, 523, 893, 921, 985
Alw21I	GWGCWC	2 cut(s)	330, 923
Alw26I	GTCTC	2 cut(s)	181, 732
AlwI	GGATC	2 cut(s)	98, 1061
AoxI	GGCC	2 cut(s)	255, 815
ApeKI	GCWGC	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	1079
AspS9I	GGNCC	1 cut(s)	815
AsuC2I	CCSGG	1 cut(s)	345
AsuHPI	GGTGA	2 cut(s)	359, 760
BaeGI	GKGCMC	2 cut(s)	34, 345
BanII	GRGCYC	2 cut(s)	330, 923
BbsI	GAAGAC	1 cut(s)	498
Bbv12I	GWGCWC	2 cut(s)	330, 923
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	1 cut(s)	541
BccI	CCATC	3 cut(s)	350, 766, 860
BceAI	ACGGC	1 cut(s)	914
BciVI	GTATCC	1 cut(s)	10
BclI	TGATCA	1 cut(s)	705
BcnI	CCSGG	1 cut(s)	345
BcoDI	GTCTC	2 cut(s)	181, 732
BfaI	CTAG	1 cut(s)	630
BfuI	GTATCC	1 cut(s)	10
BisI	GCNGC	1 cut(s)	555
BlpI	GCTNAGC	1 cut(s)	986
BlsI	GCNGC	1 cut(s)	556
Bme1390I	CCNGG	1 cut(s)	345
BmeRI	GACNNNNNGTC	2 cut(s)	468, 1042
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	345
BmrI	ACTGGG	1 cut(s)	22
BmsI	GCATC	2 cut(s)	412, 541
BmuI	ACTGGG	1 cut(s)	22
BpiI	GAAGAC	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	907
Bpu10I	CCTNAGC	1 cut(s)	195
Bpu1102I	GCTNAGC	1 cut(s)	986
BpuEI	CTTGAG	2 cut(s)	596, 699
BpuMI	CCSGG	1 cut(s)	345
BsaJI	CCNNGG	1 cut(s)	252
BsaXI	ACNNNNNCTCC	4 cut(s)	680, 710, 910, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	351, 409, 536
Bse1I	ACTGG	5 cut(s)	17, 306, 461, 656, 924
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	5 cut(s)	59, 361, 545, 851, 852
BseLI	CCNNNNNNNGG	3 cut(s)	351, 409, 536
BseMII	CTCAG	2 cut(s)	209, 977
BseNI	ACTGG	5 cut(s)	17, 306, 461, 656, 924
BseRI	GAGGAG	2 cut(s)	139, 262
BseSI	GKGCMC	2 cut(s)	34, 345
BseXI	GCAGC	1 cut(s)	541
BshFI	GGCC	2 cut(s)	257, 817
BsiHKAI	GWGCWC	2 cut(s)	330, 923
BsiSI	CCGG	1 cut(s)	345
BslFI	GGGAC	1 cut(s)	456
BslI	CCNNNNNNNGG	3 cut(s)	351, 409, 536
BsmAI	GTCTC	2 cut(s)	181, 732
BsmBI	CGTCTC	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	456
BsnI	GGCC	2 cut(s)	257, 817
Bsp1286I	GDGCHC	4 cut(s)	34, 330, 345, 923
Bsp143I	GATC	6 cut(s)	103, 183, 705, 958, 1002, 1066
Bsp1720I	GCTNAGC	1 cut(s)	986
BspACI	CCGC	7 cut(s)	153, 285, 291, 303, 323, 882, 1039
BspANI	GGCC	2 cut(s)	257, 817
BspCNI	CTCAG	2 cut(s)	208, 978
BspLI	GGNNCC	1 cut(s)	389
BspPI	GGATC	2 cut(s)	98, 1061
BspQI	GCTCTTC	1 cut(s)	975
BsrI	ACTGG	5 cut(s)	17, 306, 461, 656, 924
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	6 cut(s)	103, 183, 705, 958, 1002, 1066
BssT1I	CCWWGG	1 cut(s)	252
Bst4CI	ACNGT	3 cut(s)	535, 564, 807
Bst6I	CTCTTC	1 cut(s)	975
BstC8I	GCNNGC	3 cut(s)	73, 882, 1099
BstDEI	CTNAG	3 cut(s)	195, 788, 986
BstF5I	GGATG	5 cut(s)	59, 361, 545, 851, 852
BstHHI	GCGC	1 cut(s)	1079
BstKTI	GATC	6 cut(s)	106, 186, 708, 961, 1005, 1069
BstMAI	GTCTC	2 cut(s)	181, 732
BstMBI	GATC	6 cut(s)	103, 183, 705, 958, 1002, 1066
BstMWI	GCNNNNNNNGC	1 cut(s)	890
BstNSI	RCATGY	1 cut(s)	1045
BstSCI	CCNGG	1 cut(s)	343
BstSLI	GKGCMC	2 cut(s)	34, 345
BstV1I	GCAGC	1 cut(s)	541
BstV2I	GAAGAC	1 cut(s)	498
BsuI	GTATCC	1 cut(s)	10
BsuRI	GGCC	2 cut(s)	257, 817
BtsCI	GGATG	5 cut(s)	59, 361, 545, 851, 852
BtsIMutI	CAGTG	4 cut(s)	313, 663, 812, 931
Cac8I	GCNNGC	3 cut(s)	73, 882, 1099
CfoI	GCGC	1 cut(s)	1079
Cfr13I	GGNCC	1 cut(s)	815
Csp6I	GTAC	1 cut(s)	565
CviAII	CATG	5 cut(s)	27, 731, 857, 965, 1042
CviQI	GTAC	1 cut(s)	565
DdeI	CTNAG	3 cut(s)	195, 788, 986
DpnI	GATC	6 cut(s)	105, 185, 707, 960, 1004, 1068
DpnII	GATC	6 cut(s)	103, 183, 705, 958, 1002, 1066
DriI	GACNNNNNGTC	2 cut(s)	468, 1042
Eam1104I	CTCTTC	1 cut(s)	975
Eam1105I	GACNNNNNGTC	2 cut(s)	468, 1042
EarI	CTCTTC	1 cut(s)	975
EciI	GGCGGA	5 cut(s)	142, 274, 280, 292, 338
Ecl136II	GAGCTC	2 cut(s)	328, 921
Eco130I	CCWWGG	1 cut(s)	252
Eco24I	GRGCYC	2 cut(s)	330, 923
Eco53kI	GAGCTC	2 cut(s)	328, 921
Eco57I	CTGAAG	1 cut(s)	402
EcoICRI	GAGCTC	2 cut(s)	328, 921
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	330, 923
ErhI	CCWWGG	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	181
FaeI	CATG	5 cut(s)	30, 734, 860, 968, 1045
FaqI	GGGAC	1 cut(s)	456
FatI	CATG	5 cut(s)	26, 730, 856, 964, 1041
FauI	CCCGC	1 cut(s)	889
FauNDI	CATATG	1 cut(s)	1103
FbaI	TGATCA	1 cut(s)	705
Fnu4HI	GCNGC	1 cut(s)	555
FokI	GGATG	5 cut(s)	46, 368, 552, 839, 858
FriOI	GRGCYC	2 cut(s)	330, 923
Fsp4HI	GCNGC	1 cut(s)	555
FspBI	CTAG	1 cut(s)	630
GlaI	GCGC	1 cut(s)	1078
GluI	GCNGC	1 cut(s)	555
GsuI	CTGGAG	1 cut(s)	907
HaeIII	GGCC	2 cut(s)	257, 817
HapII	CCGG	1 cut(s)	345
HhaI	GCGC	1 cut(s)	1079
Hin1II	CATG	5 cut(s)	30, 734, 860, 968, 1045
Hin6I	GCGC	1 cut(s)	1077
HinP1I	GCGC	1 cut(s)	1077
HindIII	AAGCTT	2 cut(s)	118, 891
HinfI	GANTC	5 cut(s)	463, 725, 751, 784, 860
HpaII	CCGG	1 cut(s)	345
HphI	GGTGA	2 cut(s)	359, 760
Hpy166II	GTNNAC	2 cut(s)	598, 803
Hpy188I	TCNGA	2 cut(s)	181, 824
Hpy188III	TCNNGA	5 cut(s)	101, 124, 575, 716, 1006
Hpy8I	GTNNAC	2 cut(s)	598, 803
HpyAV	CCTTC	6 cut(s)	244, 250, 256, 274, 286, 377
HpyCH4III	ACNGT	3 cut(s)	535, 564, 807
HpyCH4V	TGCA	1 cut(s)	781
HpyF10VI	GCNNNNNNNGC	1 cut(s)	890
HpyF3I	CTNAG	3 cut(s)	195, 788, 986
Hsp92II	CATG	5 cut(s)	30, 734, 860, 968, 1045
HspAI	GCGC	1 cut(s)	1077
Ksp22I	TGATCA	1 cut(s)	705
Kzo9I	GATC	6 cut(s)	103, 183, 705, 958, 1002, 1066
LguI	GCTCTTC	1 cut(s)	975
LmnI	GCTCC	6 cut(s)	152, 325, 333, 832, 918, 926
Lsp1109I	GCAGC	1 cut(s)	541
LweI	GCATC	2 cut(s)	412, 541
MaeI	CTAG	1 cut(s)	630
MaeIII	GTNAC	1 cut(s)	1044
MalI	GATC	6 cut(s)	105, 185, 707, 960, 1004, 1068
MboI	GATC	6 cut(s)	103, 183, 705, 958, 1002, 1066
MboII	GAAGA	3 cut(s)	503, 781, 992
MfeI	CAATTG	1 cut(s)	213
MhlI	GDGCHC	4 cut(s)	34, 330, 345, 923
MluCI	AATT	5 cut(s)	42, 213, 741, 836, 991
MlyI	GAGTC	3 cut(s)	457, 734, 793
MmeI	TCCRAC	4 cut(s)	87, 228, 517, 666
MseI	TTAA	2 cut(s)	444, 942
MslI	CAYNNNNRTG	1 cut(s)	336
MspI	CCGG	1 cut(s)	345
MspR9I	CCNGG	1 cut(s)	345
MunI	CAATTG	1 cut(s)	213
MwoI	GCNNNNNNNGC	1 cut(s)	890
NciI	CCSGG	1 cut(s)	345
NdeI	CATATG	1 cut(s)	1103
NdeII	GATC	6 cut(s)	103, 183, 705, 958, 1002, 1066
NlaIII	CATG	5 cut(s)	30, 734, 860, 968, 1045
NlaIV	GGNNCC	1 cut(s)	389
NmuCI	GTSAC	1 cut(s)	1044
NspI	RCATGY	1 cut(s)	1045
PciSI	GCTCTTC	1 cut(s)	975
PcsI	WCGNNNNNNNCGW	1 cut(s)	108
PfeI	GAWTC	2 cut(s)	751, 860
PkrI	GCNGC	1 cut(s)	556
PleI	GAGTC	3 cut(s)	457, 733, 792
PpsI	GAGTC	3 cut(s)	457, 733, 792
Psp124BI	GAGCTC	2 cut(s)	330, 923
PspN4I	GGNNCC	1 cut(s)	389
PspPI	GGNCC	1 cut(s)	815
RsaI	GTAC	1 cut(s)	566
RsaNI	GTAC	1 cut(s)	565
RseI	CAYNNNNRTG	1 cut(s)	336
SacI	GAGCTC	2 cut(s)	330, 923
SapI	GCTCTTC	1 cut(s)	975
SaqAI	TTAA	2 cut(s)	444, 942
SatI	GCNGC	1 cut(s)	555
Sau3AI	GATC	6 cut(s)	103, 183, 705, 958, 1002, 1066
Sau96I	GGNCC	1 cut(s)	815
SchI	GAGTC	3 cut(s)	457, 734, 793
ScrFI	CCNGG	1 cut(s)	345
SduI	GDGCHC	4 cut(s)	34, 330, 345, 923
SfaNI	GCATC	2 cut(s)	412, 541
SmiMI	CAYNNNNRTG	1 cut(s)	336
SmlI	CTYRAG	2 cut(s)	575, 714
SmoI	CTYRAG	2 cut(s)	575, 714
Sse9I	AATT	5 cut(s)	42, 213, 741, 836, 991
SsiI	CCGC	7 cut(s)	153, 285, 291, 303, 323, 882, 1039
SspI	AATATT	1 cut(s)	1063
SspMI	CTAG	1 cut(s)	630
SstI	GAGCTC	2 cut(s)	330, 923
StyD4I	CCNGG	1 cut(s)	343
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	3 cut(s)	535, 564, 807
TaqI	TCGA	4 cut(s)	102, 123, 453, 549
TasI	AATT	5 cut(s)	42, 213, 741, 836, 991
TfiI	GAWTC	2 cut(s)	751, 860
Tru1I	TTAA	2 cut(s)	444, 942
Tru9I	TTAA	2 cut(s)	444, 942
TscAI	CASTG	4 cut(s)	313, 663, 812, 931
TseFI	GTSAC	1 cut(s)	1044
TseI	GCWGC	1 cut(s)	554
Tsp45I	GTSAC	1 cut(s)	1044
TspDTI	ATGAA	1 cut(s)	782
TspGWI	ACGGA	2 cut(s)	100, 163
TspRI	CASTG	4 cut(s)	313, 663, 812, 931
XceI	RCATGY	1 cut(s)	1045
XspI	CTAG	1 cut(s)	630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.