Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

42315720 .. 42318932

Gene Structure 3213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG252900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCTATGGCTTTAAACAGTGTAATCCCCCACACTAGAGCTTTAAGCTTAAGCACTTCCTTGCCTTCTTCTCCTCATAAAAAGCCTTCAAGCCCTCAATTTCCACACCCACAAAATCGTCGCACTGCTGCTCAAATTGTCCAGAGCGCTGCCTCTTCCTCTACCAAGACCACCCTCCCTGACCTTGAACACCAACTTCATGAGGAGGATCGCAGTAACAGCTTCAATCCCACCTCCACTTCTGCCTCTGCGTGGTCCGAATTTGCCAGAAATGTATCCGGTGAATGGGATGGCTATGGAGCAGACTTCACAACCGAAGGGAACCCAATTGAACTCCCAGAAAGGGTTGTGCCTGATGCTTACAGGGAGTGGGAGGTTAAGGTTTTCGACTGGCAGACACAATGTCCCACTCTTGCTGACCCAGAAGACCAAGTTCTTGCCTACAAGACGATAGAGCTACTTCCCACAGTTGGATGTGAAGCCGATGCTGCTACAAGGTACAGCATCCTCGAGAGGAATGTGGGTGGTGTGAACAACAAAGTTTCTGCCTTTGTGTATCAGGCTAGTGGATGTTATGTGTCTGTTTTGCCAGTGGAGGATAAGAGTTTGAATAAGTTGTTGGAAGTAGAGTATTGCTTGATCAATCCTCAAGATAAGGAGTCTCGTGTGAGGATAATTCAGGTGATTCGCATAGACAATATGAAGATGGTATTGCAGAGTCTTAGAGTTCTTTGTGAACAGTGGTACGGGCCATTCAGAAATGGGGAGCAATTAGGTGGATGTGCCATCCGTGATTCTGCTTTTGCTTCTACGCCCGCATTGGAAGCTTCAAAAGTTGTTGGTACTTGGCGGAGCTCCAGTGCTGTTGCCAATTTTAGTGGTTCTCAAAATGTGAGTTATCAAAATCCAAGTTATTTTGGTTTTGTGTGTATGATCTGCATGTTAATGTTATGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

35.17

Weight (kDa)

5.35

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	816, 850
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	260
AfaI	GTAC	3 cut(s)	500, 746, 844
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	6 cut(s)	90, 188, 226, 332, 610, 831
AhdI	GACNNNNNGTC	1 cut(s)	402
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	6 cut(s)	41, 48, 222, 457, 827, 855
AluI	AGCT	6 cut(s)	41, 48, 222, 457, 827, 855
Alw21I	GWGCWC	1 cut(s)	857
Alw26I	GTCTC	1 cut(s)	666
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	509
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	1 cut(s)	749
ApeKI	GCWGC	3 cut(s)	128, 149, 488
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	255, 749
AsuHPI	GGTGA	2 cut(s)	293, 694
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	857
BauI	CACGAG	1 cut(s)	663
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	857
BbvI	GCAGC	3 cut(s)	115, 136, 475
BccI	CCATC	3 cut(s)	284, 700, 794
BciVI	GTATCC	1 cut(s)	286
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	1 cut(s)	666
BfaI	CTAG	2 cut(s)	36, 564
BfoI	RGCGCY	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	49
BfuI	GTATCC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	129, 150, 489
BlsI	GCNGC	3 cut(s)	130, 151, 490
Bme18I	GGWCC	1 cut(s)	255
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	509
BmgT120I	GGNCC	2 cut(s)	255, 749
BmiI	GGNNCC	1 cut(s)	323
BmsI	GCATC	3 cut(s)	346, 475, 513
BpiI	GAAGAC	1 cut(s)	432
BpmI	CTGGAG	1 cut(s)	841
BpuEI	CTTGAG	1 cut(s)	633
BsaWI	WCCGGW	1 cut(s)	278
BsaXI	ACNNNNNCTCC	2 cut(s)	844, 874
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
Bse1I	ACTGG	3 cut(s)	395, 590, 858
BseGI	GGATG	6 cut(s)	295, 479, 504, 575, 785, 786
BseLI	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
BseNI	ACTGG	3 cut(s)	395, 590, 858
BseRI	GAGGAG	2 cut(s)	63, 218
BseXI	GCAGC	3 cut(s)	115, 136, 475
BshFI	GGCC	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	857
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	1 cut(s)	390
BslI	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
BsmAI	GTCTC	1 cut(s)	666
BsmFI	GGGAC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	751
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	857
Bsp143I	GATC	3 cut(s)	208, 639, 933
BspACI	CCGC	2 cut(s)	816, 850
BspANI	GGCC	1 cut(s)	751
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	395, 590, 858
BssMI	GATC	3 cut(s)	208, 639, 933
BssSI	CACGAG	1 cut(s)	663
Bst2BI	CACGAG	1 cut(s)	663
Bst4CI	ACNGT	3 cut(s)	20, 469, 741
Bst6I	CTCTTC	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	816
BstDEI	CTNAG	1 cut(s)	722
BstF5I	GGATG	6 cut(s)	295, 479, 504, 575, 785, 786
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	211, 642, 936
BstMAI	GTCTC	1 cut(s)	666
BstMBI	GATC	3 cut(s)	208, 639, 933
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 488, 824
BstNSI	RCATGY	1 cut(s)	943
BstV1I	GCAGC	3 cut(s)	115, 136, 475
BstV2I	GAAGAC	1 cut(s)	432
BsuI	GTATCC	1 cut(s)	286
BsuRI	GGCC	1 cut(s)	751
BtsCI	GGATG	6 cut(s)	295, 479, 504, 575, 785, 786
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	5 cut(s)	25, 123, 597, 746, 865
Cac8I	GCNNGC	1 cut(s)	816
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	2 cut(s)	255, 749
Csp6I	GTAC	3 cut(s)	499, 745, 843
CspCI	CAANNNNNGTGG	2 cut(s)	859, 894
CviAII	CATG	2 cut(s)	200, 940
CviQI	GTAC	3 cut(s)	499, 745, 843
DdeI	CTNAG	1 cut(s)	722
DpnI	GATC	3 cut(s)	210, 641, 935
DpnII	GATC	3 cut(s)	208, 639, 933
DraI	TTTAAA	1 cut(s)	15
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	865
Ecl136II	GAGCTC	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	857
Eco47I	GGWCC	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	855
Eco88I	CYCGRG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	855
EcoT38I	GRGCYC	1 cut(s)	857
FaeI	CATG	2 cut(s)	203, 943
FaqI	GGGAC	1 cut(s)	390
FatI	CATG	2 cut(s)	199, 939
FauI	CCCGC	1 cut(s)	823
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	3 cut(s)	129, 150, 489
FokI	GGATG	6 cut(s)	302, 486, 491, 582, 773, 792
FriOI	GRGCYC	1 cut(s)	857
Fsp4HI	GCNGC	3 cut(s)	129, 150, 489
FspBI	CTAG	2 cut(s)	36, 564
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	3 cut(s)	129, 150, 489
GsuI	CTGGAG	1 cut(s)	841
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	203, 943
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	2 cut(s)	46, 825
HinfI	GANTC	4 cut(s)	659, 685, 718, 794
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	293, 694
Hpy166II	GTNNAC	2 cut(s)	532, 737
Hpy188I	TCNGA	2 cut(s)	259, 758
Hpy188III	TCNNGA	4 cut(s)	142, 200, 511, 650
Hpy8I	GTNNAC	2 cut(s)	532, 737
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	3 cut(s)	75, 96, 311
HpyCH4III	ACNGT	3 cut(s)	20, 469, 741
HpyCH4V	TGCA	2 cut(s)	715, 939
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 488, 824
HpyF3I	CTNAG	1 cut(s)	722
Hsp92II	CATG	2 cut(s)	203, 943
HspAI	GCGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	3 cut(s)	208, 639, 933
LmnI	GCTCC	4 cut(s)	299, 766, 852, 860
Lsp1109I	GCAGC	3 cut(s)	115, 136, 475
LweI	GCATC	3 cut(s)	346, 475, 513
MaeI	CTAG	2 cut(s)	36, 564
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	3 cut(s)	210, 641, 935
MboI	GATC	3 cut(s)	208, 639, 933
MboII	GAAGA	4 cut(s)	60, 147, 437, 715
MfeI	CAATTG	1 cut(s)	327
MhlI	GDGCHC	1 cut(s)	857
MluCI	AATT	7 cut(s)	98, 135, 260, 327, 675, 770, 871
MlyI	GAGTC	2 cut(s)	668, 727
MmeI	TCCRAC	2 cut(s)	451, 600
MseI	TTAA	5 cut(s)	14, 44, 50, 378, 944
MslI	CAYNNNNRTG	1 cut(s)	944
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	1 cut(s)	279
MunI	CAATTG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	219, 488, 824
NdeII	GATC	3 cut(s)	208, 639, 933
NlaIII	CATG	2 cut(s)	203, 943
NlaIV	GGNNCC	1 cut(s)	323
NspI	RCATGY	1 cut(s)	943
PaeR7I	CTCGAG	1 cut(s)	509
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	685, 794
PkrI	GCNGC	3 cut(s)	130, 151, 490
PleI	GAGTC	2 cut(s)	667, 726
PpsI	GAGTC	2 cut(s)	667, 726
Psp124BI	GAGCTC	1 cut(s)	857
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	255, 749
RsaI	GTAC	3 cut(s)	500, 746, 844
RsaNI	GTAC	3 cut(s)	499, 745, 843
RseI	CAYNNNNRTG	1 cut(s)	944
SacI	GAGCTC	1 cut(s)	857
SaqAI	TTAA	5 cut(s)	14, 44, 50, 378, 944
SatI	GCNGC	3 cut(s)	129, 150, 489
Sau3AI	GATC	3 cut(s)	208, 639, 933
Sau96I	GGNCC	2 cut(s)	255, 749
SchI	GAGTC	2 cut(s)	668, 727
SduI	GDGCHC	1 cut(s)	857
SfaNI	GCATC	3 cut(s)	346, 475, 513
Sfr274I	CTCGAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	3 cut(s)	49, 509, 648
SmoI	CTYRAG	3 cut(s)	49, 509, 648
Sse9I	AATT	7 cut(s)	98, 135, 260, 327, 675, 770, 871
SsiI	CCGC	2 cut(s)	816, 850
SspMI	CTAG	2 cut(s)	36, 564
SstI	GAGCTC	1 cut(s)	857
TaaI	ACNGT	3 cut(s)	20, 469, 741
TaqI	TCGA	2 cut(s)	387, 510
TasI	AATT	7 cut(s)	98, 135, 260, 327, 675, 770, 871
TfiI	GAWTC	2 cut(s)	685, 794
Tru1I	TTAA	5 cut(s)	14, 44, 50, 378, 944
Tru9I	TTAA	5 cut(s)	14, 44, 50, 378, 944
TscAI	CASTG	5 cut(s)	25, 130, 597, 746, 865
TseI	GCWGC	3 cut(s)	128, 149, 488
TspDTI	ATGAA	2 cut(s)	188, 716
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	5 cut(s)	25, 130, 597, 746, 865
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	1 cut(s)	260
XceI	RCATGY	1 cut(s)	943
XhoI	CTCGAG	1 cut(s)	509
XspI	CTAG	2 cut(s)	36, 564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.