Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

46379046 .. 46381378

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG252500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGGCTATGGCTTTAAACAGTGTAATCCCCCACACTAGAGCTTTAAGCTTAAGCACTTCCTTGCCTTCTTCTCCTCATAAAAAGCCTTCAAGCCCTCAATTTCCACACCCACAACATCGTCGCACTGCTGCTCAAATTGTCCAGAGCGCTGCCTCTTCCTCTACCAAGACCACCCTCCCTGACCTTGAACACCAACTTGATGAGGAGGATCGCAGTAACAGCTTCAATCCCACCTCCACTTCTGCCTCTGCGTGGTCCGAATTTGCCAGAAATGTGTCCGGTGAATGGGACGGCTATGGAGCAGACTTCACAACCGAAGGGAACCCAATTGAACTCCCAGAAAGGGTTGTGCCTGATGCTTACAGGGAGTGGGAGGTTAAGGTTTTCGACTGGCAGACACAATGTCCCACTCTTGCTGACCCAGAAGACCAAGTTCTTGCCTACAAGACGATAGAGCTACTTCCCACAGTTGGATGTGAAGCCGATGCTGCTACGCGGTACAGCATCCTCGAGAGGAATGTGGGTGGTGTGAACAACAAAGTTTCTGCCTTTGCGTATCAGGCTAGTGGATGTTATGTGTCTGTTTTGCCAGTGGAGGATAAGAGTTTGAATAAGTTGTTGGAAGTAGAGTATTGCTTGATCAATCCTCAAGATAAGGAGTCTCGTGTGAGGATAATTCAGGTGATTCGCATAGACAATATGAAGATGGTATTGCAGAGTCTTAGAGTTCTTTGTGAACAGTGGTACGGGCCATTCAGAAATGGGGAGCAATTAGGTGGATGTGCTATCCGTGATTCTGCTTTTGCTTCTACACCTGCATTGGAAGCTTCAAAAGTTGTTGGTACTTGGCAGAGCTCCAGTGCTGTTGCCAATTTTAATGGTTCTCAAAATAACTTTCAACAACTTTCAGGGGACAGTGAGCAGAACTCAATAAGAGATGAAAGTGGTCTCATATTGCTTCCCAAGCAATTGTGGTGTTCAGTAAAAGAAGGTAAAGATGGCAGTACTTACAGCGAGGTGGGATGGCTATTTGATGAAGGACGTGCCATCACATCAAGATGCACCTTCTCAAGCGCAGCAACTCTGAAGGAAATCTCAGTAGCCTCTGAAACTGTAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

40.97

Weight (kDa)

4.97

Isoelectric Point (pI)

45.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	823
Acc36I	ACCTGC	1 cut(s)	823
AccII	CGCG	1 cut(s)	496
AciI	CCGC	1 cut(s)	496
AclWI	GGATC	1 cut(s)	216
AcsI	RAATTY	1 cut(s)	260
AcuI	CTGAAG	1 cut(s)	1106
AfaI	GTAC	4 cut(s)	500, 746, 844, 1006
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	7 cut(s)	90, 188, 226, 332, 610, 831, 899
AhdI	GACNNNNNGTC	1 cut(s)	402
AjiI	CACGTC	1 cut(s)	1043
AjuI	GAANNNNNNNTTGG	2 cut(s)	602, 634
AluBI	AGCT	7 cut(s)	41, 48, 222, 457, 827, 855, 1118
AluI	AGCT	7 cut(s)	41, 48, 222, 457, 827, 855, 1118
Alw21I	GWGCWC	1 cut(s)	857
Alw26I	GTCTC	2 cut(s)	666, 953
AlwI	GGATC	1 cut(s)	216
Ama87I	CYCGRG	1 cut(s)	509
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	1 cut(s)	749
ApeKI	GCWGC	4 cut(s)	128, 149, 488, 1076
ApoI	RAATTY	1 cut(s)	260
AspLEI	GCGC	2 cut(s)	149, 1076
AspS9I	GGNCC	2 cut(s)	255, 749
AsuHPI	GGTGA	2 cut(s)	293, 694
AvaI	CYCGRG	1 cut(s)	509
AvaII	GGWCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	857
BauI	CACGAG	1 cut(s)	663
BbsI	GAAGAC	1 cut(s)	432
Bbv12I	GWGCWC	1 cut(s)	857
BbvI	GCAGC	4 cut(s)	115, 136, 475, 1088
BccI	CCATC	4 cut(s)	700, 992, 1017, 1055
BceAI	ACGGC	1 cut(s)	307
BclI	TGATCA	1 cut(s)	639
BcoDI	GTCTC	2 cut(s)	666, 953
BfaI	CTAG	2 cut(s)	36, 564
BfmI	CTRYAG	1 cut(s)	1113
BfoI	RGCGCY	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	823
BisI	GCNGC	4 cut(s)	129, 150, 489, 1077
BlsI	GCNGC	4 cut(s)	130, 151, 490, 1078
BmcAI	AGTACT	1 cut(s)	1006
Bme18I	GGWCC	1 cut(s)	255
BmeRI	GACNNNNNGTC	1 cut(s)	402
BmeT110I	CYCGRG	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	1043
BmgT120I	GGNCC	2 cut(s)	255, 749
BmiI	GGNNCC	1 cut(s)	323
BmsI	GCATC	4 cut(s)	346, 475, 513, 1049
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	911, 943
BpmI	CTGGAG	1 cut(s)	841
BpuEI	CTTGAG	2 cut(s)	633, 1054
BsaI	GGTCTC	1 cut(s)	953
BsaWI	WCCGGW	1 cut(s)	278
Bsc4I	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
Bse1I	ACTGG	3 cut(s)	395, 590, 858
BseGI	GGATG	5 cut(s)	479, 504, 575, 785, 1028
BseLI	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
BseMII	CTCAG	1 cut(s)	1110
BseNI	ACTGG	3 cut(s)	395, 590, 858
BseRI	GAGGAG	2 cut(s)	63, 218
BseXI	GCAGC	4 cut(s)	115, 136, 475, 1088
Bsh1236I	CGCG	1 cut(s)	496
BshFI	GGCC	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	857
BsiHKCI	CYCGRG	1 cut(s)	509
BsiSI	CCGG	1 cut(s)	279
BslFI	GGGAC	3 cut(s)	302, 390, 926
BslI	CCNNNNNNNGG	4 cut(s)	252, 285, 343, 470
BsmAI	GTCTC	2 cut(s)	666, 953
BsmFI	GGGAC	3 cut(s)	302, 390, 926
BsnI	GGCC	1 cut(s)	751
Bso31I	GGTCTC	1 cut(s)	953
BsoBI	CYCGRG	1 cut(s)	509
Bsp1286I	GDGCHC	1 cut(s)	857
Bsp143I	GATC	2 cut(s)	208, 639
BspACI	CCGC	1 cut(s)	496
BspANI	GGCC	1 cut(s)	751
BspCNI	CTCAG	1 cut(s)	1109
BspFNI	CGCG	1 cut(s)	496
BspLI	GGNNCC	1 cut(s)	323
BspMI	ACCTGC	1 cut(s)	823
BspPI	GGATC	1 cut(s)	216
BspTI	CTTAAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	953
BsrI	ACTGG	3 cut(s)	395, 590, 858
BssMI	GATC	2 cut(s)	208, 639
BssSI	CACGAG	1 cut(s)	663
Bst2BI	CACGAG	1 cut(s)	663
Bst4CI	ACNGT	5 cut(s)	20, 469, 741, 917, 1114
Bst6I	CTCTTC	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	49
BstDEI	CTNAG	2 cut(s)	722, 1096
BstF5I	GGATG	5 cut(s)	479, 504, 575, 785, 1028
BstFNI	CGCG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 1076
BstKTI	GATC	2 cut(s)	211, 642
BstMAI	GTCTC	2 cut(s)	666, 953
BstMBI	GATC	2 cut(s)	208, 639
BstMWI	GCNNNNNNNGC	5 cut(s)	219, 488, 560, 824, 964
BstSFI	CTRYAG	1 cut(s)	1113
BstUI	CGCG	1 cut(s)	496
BstV1I	GCAGC	4 cut(s)	115, 136, 475, 1088
BstV2I	GAAGAC	1 cut(s)	432
BsuRI	GGCC	1 cut(s)	751
BtrI	CACGTC	1 cut(s)	1043
BtsCI	GGATG	5 cut(s)	479, 504, 575, 785, 1028
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	6 cut(s)	25, 123, 597, 746, 865, 922
BveI	ACCTGC	1 cut(s)	823
CfoI	GCGC	2 cut(s)	149, 1076
Cfr13I	GGNCC	2 cut(s)	255, 749
Csp6I	GTAC	4 cut(s)	499, 745, 843, 1005
CviQI	GTAC	4 cut(s)	499, 745, 843, 1005
DdeI	CTNAG	2 cut(s)	722, 1096
DpnI	GATC	2 cut(s)	210, 641
DpnII	GATC	2 cut(s)	208, 639
DraI	TTTAAA	1 cut(s)	15
DriI	GACNNNNNGTC	1 cut(s)	402
Eam1104I	CTCTTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	402
EarI	CTCTTC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	855
Eco24I	GRGCYC	1 cut(s)	857
Eco31I	GGTCTC	1 cut(s)	953
Eco47I	GGWCC	1 cut(s)	255
Eco47III	AGCGCT	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	855
Eco57I	CTGAAG	1 cut(s)	1106
Eco88I	CYCGRG	1 cut(s)	509
EcoICRI	GAGCTC	1 cut(s)	855
EcoT38I	GRGCYC	1 cut(s)	857
FaiI	YATR	7 cut(s)	8, 78, 297, 576, 692, 701, 953
FaqI	GGGAC	3 cut(s)	302, 390, 926
FbaI	TGATCA	1 cut(s)	639
Fnu4HI	GCNGC	4 cut(s)	129, 150, 489, 1077
FokI	GGATG	5 cut(s)	486, 491, 582, 792, 1035
FriOI	GRGCYC	1 cut(s)	857
Fsp4HI	GCNGC	4 cut(s)	129, 150, 489, 1077
FspBI	CTAG	2 cut(s)	36, 564
GlaI	GCGC	2 cut(s)	148, 1075
GluI	GCNGC	4 cut(s)	129, 150, 489, 1077
GsuI	CTGGAG	1 cut(s)	841
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	751
HapII	CCGG	1 cut(s)	279
HhaI	GCGC	2 cut(s)	149, 1076
Hin6I	GCGC	2 cut(s)	147, 1074
HinP1I	GCGC	2 cut(s)	147, 1074
HindIII	AAGCTT	2 cut(s)	46, 825
HinfI	GANTC	4 cut(s)	659, 685, 718, 794
HpaII	CCGG	1 cut(s)	279
HphI	GGTGA	2 cut(s)	293, 694
Hpy166II	GTNNAC	2 cut(s)	532, 737
Hpy188I	TCNGA	4 cut(s)	259, 758, 1086, 1108
Hpy188III	TCNNGA	4 cut(s)	142, 511, 650, 1056
Hpy8I	GTNNAC	2 cut(s)	532, 737
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	7 cut(s)	75, 96, 311, 983, 1031, 1075, 1081
HpyCH4III	ACNGT	5 cut(s)	20, 469, 741, 917, 1114
HpyCH4IV	ACGT	1 cut(s)	1042
HpyCH4V	TGCA	3 cut(s)	715, 818, 1062
HpyF10VI	GCNNNNNNNGC	5 cut(s)	219, 488, 560, 824, 964
HpyF3I	CTNAG	2 cut(s)	722, 1096
HpySE526I	ACGT	1 cut(s)	1042
HspAI	GCGC	2 cut(s)	147, 1074
Ksp22I	TGATCA	1 cut(s)	639
Kzo9I	GATC	2 cut(s)	208, 639
LmnI	GCTCC	3 cut(s)	299, 766, 860
Lsp1109I	GCAGC	4 cut(s)	115, 136, 475, 1088
LweI	GCATC	4 cut(s)	346, 475, 513, 1049
MaeI	CTAG	2 cut(s)	36, 564
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	210, 641
MboI	GATC	2 cut(s)	208, 639
MboII	GAAGA	4 cut(s)	60, 147, 437, 715
MfeI	CAATTG	2 cut(s)	327, 968
MhlI	GDGCHC	1 cut(s)	857
MluCI	AATT	8 cut(s)	98, 135, 260, 327, 675, 770, 871, 968
MlyI	GAGTC	2 cut(s)	668, 727
MmeI	TCCRAC	2 cut(s)	451, 600
MseI	TTAA	5 cut(s)	14, 44, 50, 378, 876
MslI	CAYNNNNRTG	1 cut(s)	1057
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	1 cut(s)	279
MunI	CAATTG	2 cut(s)	327, 968
MvnI	CGCG	1 cut(s)	496
MwoI	GCNNNNNNNGC	5 cut(s)	219, 488, 560, 824, 964
NdeII	GATC	2 cut(s)	208, 639
NlaIV	GGNNCC	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	509
PaqCI	CACCTGC	1 cut(s)	823
PfeI	GAWTC	2 cut(s)	685, 794
PkrI	GCNGC	4 cut(s)	130, 151, 490, 1078
PleI	GAGTC	2 cut(s)	667, 726
PpsI	GAGTC	2 cut(s)	667, 726
Psp124BI	GAGCTC	1 cut(s)	857
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	255, 749
RsaI	GTAC	4 cut(s)	500, 746, 844, 1006
RsaNI	GTAC	4 cut(s)	499, 745, 843, 1005
RseI	CAYNNNNRTG	1 cut(s)	1057
SacI	GAGCTC	1 cut(s)	857
SaqAI	TTAA	5 cut(s)	14, 44, 50, 378, 876
SatI	GCNGC	4 cut(s)	129, 150, 489, 1077
Sau3AI	GATC	2 cut(s)	208, 639
Sau96I	GGNCC	2 cut(s)	255, 749
ScaI	AGTACT	1 cut(s)	1006
SchI	GAGTC	2 cut(s)	668, 727
SduI	GDGCHC	1 cut(s)	857
SfaNI	GCATC	4 cut(s)	346, 475, 513, 1049
SfcI	CTRYAG	1 cut(s)	1113
Sfr274I	CTCGAG	1 cut(s)	509
SinI	GGWCC	1 cut(s)	255
SlaI	CTCGAG	1 cut(s)	509
SmiMI	CAYNNNNRTG	1 cut(s)	1057
SmlI	CTYRAG	4 cut(s)	49, 509, 648, 1069
SmoI	CTYRAG	4 cut(s)	49, 509, 648, 1069
Sse9I	AATT	8 cut(s)	98, 135, 260, 327, 675, 770, 871, 968
SsiI	CCGC	1 cut(s)	496
SspMI	CTAG	2 cut(s)	36, 564
SstI	GAGCTC	1 cut(s)	857
TaaI	ACNGT	5 cut(s)	20, 469, 741, 917, 1114
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	2 cut(s)	387, 510
TasI	AATT	8 cut(s)	98, 135, 260, 327, 675, 770, 871, 968
TatI	WGTACW	1 cut(s)	1004
TfiI	GAWTC	2 cut(s)	685, 794
Tru1I	TTAA	5 cut(s)	14, 44, 50, 378, 876
Tru9I	TTAA	5 cut(s)	14, 44, 50, 378, 876
TscAI	CASTG	6 cut(s)	25, 130, 597, 746, 865, 922
TseI	GCWGC	4 cut(s)	128, 149, 488, 1076
TspDTI	ATGAA	3 cut(s)	716, 954, 1050
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	6 cut(s)	25, 130, 597, 746, 865, 922
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	255
XapI	RAATTY	1 cut(s)	260
XhoI	CTCGAG	1 cut(s)	509
XspI	CTAG	2 cut(s)	36, 564
ZrmI	AGTACT	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.