Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Forward (+)

24817112 .. 24819490

Gene Structure 2379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013005

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGGCTATGGCTTTAAACAGTGTAATCCCCCGCACTAGAGCTTTAAGCTTAAGCACTTCCTTGCCATCTTCTCCTCATAAAAAGCCTTCAAGCCCTCAATTTCCACACCCACAAAATCGTCGCACTGCCACTCAAATTGTCCAGAGCGCTGCCTCTTCCTCAACCAAGACCACCCTCCCTGACCTTGAACACCACCTTCATGAGGGTCGCAGTAACAGCTTCAATCCCACCTCCACTTCTGCCTCTGCGTGGTCCGAATTTGCCAGAAATGTGTCCGGTGAATGGGATGGCTATGGAGCAGACTTCACAACCGAAGGGAACCCAATTGAACTCCCAGAAAGGGTTGTGCCTGATGCTTACAGGGAGTGGGAGGTTAAGGTTTTCGACTGGCAGACACAATGTCCGACTCTTGCTGACCCAGAAGACCAAGTTCTTGCCTACAAGACGATTGAGCTACTTCCCACAGTTGGATGTGAAGCCGATGCTGCTACGCGGTACAGCATCCTTGAGAGGAATGTGGGTGGCGTGAACAACAAAGTTTCTGCCTTTGCGTATCAGTCTAGTGGATGTTATGTGTCTGTTTTGCCAGTGGAGGATAAGAGTTTGAATAAGTTGTTGGAAGTGGAGTATTGCTTGATCAATCCTCAAGATAAGGAGTCTCGTGTGAGGATAATTCAGGTGATTCGCATAGTCAATATGAAGATGGTATTGCAGAGTCTTAGAGTTCTTTGTGAACAGTGGTATGGGCCATTCAGAAATGGGGAGCAATTAGGTGGATGTGCCATCCGTGATTCTGCTTTTGCTTCTACGCCCGCATTGGAAGCTTCAAAAGTTGTTGGTACTTGGCAGAGCTCCAGTGCTGTTGCCAATTTGAATGGTTCTCAAAATAACTTTCAAGACCTTTCAGGGGACAGTGAGCAGAACTCAGTAAGAGATGAAAGTGGTCTCATATTGCTTCCCAAGCAATTGTGGTGTTCGGTAAAAGAAGGTAAAGATGGCAGTACTTACAGCGAGGTGGGATGGCTATTTGATGAAGGACGTGCCATCACATCAAGATGCACCTTCTCAAGCGCAGCAACTCTGAAGGAAATCTCAGTAGCCTCTGAAACTGCAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

373

Amino Acids

40.75

Weight (kDa)

5.24

Isoelectric Point (pI)

46.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	493
AciI	CCGC	3 cut(s)	31, 493, 813
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	1103
AfaI	GTAC	3 cut(s)	497, 841, 1003
AfeI	AGCGCT	1 cut(s)	148
AfiI	CCNNNNNNNGG	6 cut(s)	202, 249, 282, 340, 467, 907
AflII	CTTAAG	1 cut(s)	49
AgsI	TTSAA	8 cut(s)	90, 188, 223, 329, 607, 828, 874, 896
AhdI	GACNNNNNGTC	1 cut(s)	399
AjiI	CACGTC	1 cut(s)	1040
AjuI	GAANNNNNNNTTGG	2 cut(s)	599, 631
AluBI	AGCT	6 cut(s)	41, 48, 219, 454, 824, 852
AluI	AGCT	6 cut(s)	41, 48, 219, 454, 824, 852
Alw21I	GWGCWC	1 cut(s)	854
Alw26I	GTCTC	2 cut(s)	663, 950
Aor51HI	AGCGCT	1 cut(s)	148
AoxI	GGCC	1 cut(s)	746
ApeKI	GCWGC	4 cut(s)	149, 485, 1073, 1112
ApoI	RAATTY	1 cut(s)	257
AspLEI	GCGC	2 cut(s)	149, 1073
AspS9I	GGNCC	2 cut(s)	252, 746
AsuHPI	GGTGA	2 cut(s)	290, 691
AvaII	GGWCC	1 cut(s)	252
BanII	GRGCYC	1 cut(s)	854
BauI	CACGAG	1 cut(s)	660
BbsI	GAAGAC	1 cut(s)	429
Bbv12I	GWGCWC	1 cut(s)	854
BbvI	GCAGC	3 cut(s)	136, 472, 1085
BccI	CCATC	7 cut(s)	73, 281, 697, 791, 989, 1014, 1052
BclI	TGATCA	1 cut(s)	636
BcoDI	GTCTC	2 cut(s)	663, 950
BfaI	CTAG	2 cut(s)	36, 561
BfmI	CTRYAG	1 cut(s)	1110
BfoI	RGCGCY	1 cut(s)	150
BfrI	CTTAAG	1 cut(s)	49
BisI	GCNGC	4 cut(s)	150, 486, 1074, 1113
BlsI	GCNGC	4 cut(s)	151, 487, 1075, 1114
BmcAI	AGTACT	1 cut(s)	1003
Bme18I	GGWCC	1 cut(s)	252
BmeRI	GACNNNNNGTC	1 cut(s)	399
BmgBI	CACGTC	1 cut(s)	1040
BmgT120I	GGNCC	2 cut(s)	252, 746
BmiI	GGNNCC	1 cut(s)	320
BmsI	GCATC	4 cut(s)	343, 472, 510, 1046
BpiI	GAAGAC	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	908, 940
BpmI	CTGGAG	1 cut(s)	838
BpuEI	CTTGAG	3 cut(s)	527, 630, 1051
BsaI	GGTCTC	1 cut(s)	950
BsaWI	WCCGGW	1 cut(s)	275
Bsc4I	CCNNNNNNNGG	6 cut(s)	202, 249, 282, 340, 467, 907
Bse1I	ACTGG	3 cut(s)	392, 587, 855
BseGI	GGATG	7 cut(s)	292, 476, 501, 572, 782, 783, 1025
BseLI	CCNNNNNNNGG	6 cut(s)	202, 249, 282, 340, 467, 907
BseMII	CTCAG	2 cut(s)	939, 1107
BseNI	ACTGG	3 cut(s)	392, 587, 855
BseRI	GAGGAG	1 cut(s)	63
BseXI	GCAGC	3 cut(s)	136, 472, 1085
Bsh1236I	CGCG	1 cut(s)	493
BshFI	GGCC	1 cut(s)	748
BsiHKAI	GWGCWC	1 cut(s)	854
BsiSI	CCGG	1 cut(s)	276
BslFI	GGGAC	1 cut(s)	923
BslI	CCNNNNNNNGG	6 cut(s)	202, 249, 282, 340, 467, 907
BsmAI	GTCTC	2 cut(s)	663, 950
BsmFI	GGGAC	1 cut(s)	923
BsnI	GGCC	1 cut(s)	748
Bso31I	GGTCTC	1 cut(s)	950
Bsp1286I	GDGCHC	1 cut(s)	854
Bsp143I	GATC	1 cut(s)	636
BspACI	CCGC	3 cut(s)	31, 493, 813
BspANI	GGCC	1 cut(s)	748
BspCNI	CTCAG	2 cut(s)	938, 1106
BspFNI	CGCG	1 cut(s)	493
BspHI	TCATGA	1 cut(s)	199
BspLI	GGNNCC	1 cut(s)	320
BspMAI	CTGCAG	1 cut(s)	1114
BspTI	CTTAAG	1 cut(s)	49
BspTNI	GGTCTC	1 cut(s)	950
BsrI	ACTGG	3 cut(s)	392, 587, 855
BssMI	GATC	1 cut(s)	636
BssSI	CACGAG	1 cut(s)	660
Bst2BI	CACGAG	1 cut(s)	660
Bst4CI	ACNGT	4 cut(s)	20, 466, 738, 914
Bst6I	CTCTTC	1 cut(s)	160
BstAFI	CTTAAG	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	813
BstDEI	CTNAG	3 cut(s)	719, 925, 1093
BstENI	CCTNNNNNAGG	1 cut(s)	200
BstF5I	GGATG	7 cut(s)	292, 476, 501, 572, 782, 783, 1025
BstFNI	CGCG	1 cut(s)	493
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	2 cut(s)	149, 1073
BstKTI	GATC	1 cut(s)	639
BstMAI	GTCTC	2 cut(s)	663, 950
BstMBI	GATC	1 cut(s)	636
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 485, 821, 961
BstSFI	CTRYAG	1 cut(s)	1110
BstUI	CGCG	1 cut(s)	493
BstV1I	GCAGC	3 cut(s)	136, 472, 1085
BstV2I	GAAGAC	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	748
BtrI	CACGTC	1 cut(s)	1040
BtsCI	GGATG	7 cut(s)	292, 476, 501, 572, 782, 783, 1025
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	6 cut(s)	25, 123, 594, 743, 862, 919
Cac8I	GCNNGC	1 cut(s)	813
CciI	TCATGA	1 cut(s)	199
CfoI	GCGC	2 cut(s)	149, 1073
Cfr13I	GGNCC	2 cut(s)	252, 746
Csp6I	GTAC	3 cut(s)	496, 840, 1002
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	2 cut(s)	200, 1116
CviQI	GTAC	3 cut(s)	496, 840, 1002
DdeI	CTNAG	3 cut(s)	719, 925, 1093
DpnI	GATC	1 cut(s)	638
DpnII	GATC	1 cut(s)	636
DraI	TTTAAA	1 cut(s)	15
DriI	GACNNNNNGTC	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	160
Eam1105I	GACNNNNNGTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	852
Eco24I	GRGCYC	1 cut(s)	854
Eco31I	GGTCTC	1 cut(s)	950
Eco47I	GGWCC	1 cut(s)	252
Eco47III	AGCGCT	1 cut(s)	148
Eco53kI	GAGCTC	1 cut(s)	852
Eco57I	CTGAAG	1 cut(s)	1103
EcoICRI	GAGCTC	1 cut(s)	852
EcoNI	CCTNNNNNAGG	1 cut(s)	200
EcoT38I	GRGCYC	1 cut(s)	854
FaeI	CATG	2 cut(s)	203, 1119
FaqI	GGGAC	1 cut(s)	923
FatI	CATG	2 cut(s)	199, 1115
FauI	CCCGC	2 cut(s)	38, 820
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	4 cut(s)	150, 486, 1074, 1113
FokI	GGATG	7 cut(s)	299, 483, 488, 579, 770, 789, 1032
FriOI	GRGCYC	1 cut(s)	854
Fsp4HI	GCNGC	4 cut(s)	150, 486, 1074, 1113
FspBI	CTAG	2 cut(s)	36, 561
GlaI	GCGC	2 cut(s)	148, 1072
GluI	GCNGC	4 cut(s)	150, 486, 1074, 1113
GsuI	CTGGAG	1 cut(s)	838
HaeII	RGCGCY	1 cut(s)	150
HaeIII	GGCC	1 cut(s)	748
HapII	CCGG	1 cut(s)	276
HhaI	GCGC	2 cut(s)	149, 1073
Hin1II	CATG	2 cut(s)	203, 1119
Hin6I	GCGC	2 cut(s)	147, 1071
HinP1I	GCGC	2 cut(s)	147, 1071
HindIII	AAGCTT	2 cut(s)	46, 822
HinfI	GANTC	5 cut(s)	406, 656, 682, 715, 791
HpaII	CCGG	1 cut(s)	276
HphI	GGTGA	2 cut(s)	290, 691
Hpy166II	GTNNAC	2 cut(s)	529, 734
Hpy188I	TCNGA	5 cut(s)	256, 405, 755, 1083, 1105
Hpy188III	TCNNGA	5 cut(s)	142, 200, 647, 896, 1053
Hpy8I	GTNNAC	2 cut(s)	529, 734
Hpy99I	CGWCG	1 cut(s)	123
HpyAV	CCTTC	7 cut(s)	96, 206, 308, 980, 1028, 1072, 1078
HpyCH4III	ACNGT	4 cut(s)	20, 466, 738, 914
HpyCH4IV	ACGT	1 cut(s)	1039
HpyCH4V	TGCA	3 cut(s)	712, 1059, 1112
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 485, 821, 961
HpyF3I	CTNAG	3 cut(s)	719, 925, 1093
HpySE526I	ACGT	1 cut(s)	1039
Hsp92II	CATG	2 cut(s)	203, 1119
HspAI	GCGC	2 cut(s)	147, 1071
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	1 cut(s)	636
LmnI	GCTCC	3 cut(s)	296, 763, 857
Lsp1109I	GCAGC	3 cut(s)	136, 472, 1085
LweI	GCATC	4 cut(s)	343, 472, 510, 1046
MaeI	CTAG	2 cut(s)	36, 561
MaeII	ACGT	1 cut(s)	1039
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	1 cut(s)	638
MboI	GATC	1 cut(s)	636
MboII	GAAGA	4 cut(s)	60, 147, 434, 712
MfeI	CAATTG	2 cut(s)	324, 965
MhlI	GDGCHC	1 cut(s)	854
MluCI	AATT	8 cut(s)	98, 135, 257, 324, 672, 767, 868, 965
MlyI	GAGTC	3 cut(s)	400, 665, 724
MmeI	TCCRAC	3 cut(s)	428, 448, 597
MseI	TTAA	4 cut(s)	14, 44, 50, 375
MslI	CAYNNNNRTG	2 cut(s)	198, 1054
MspCI	CTTAAG	1 cut(s)	49
MspI	CCGG	1 cut(s)	276
MunI	CAATTG	2 cut(s)	324, 965
MvnI	CGCG	1 cut(s)	493
MwoI	GCNNNNNNNGC	4 cut(s)	216, 485, 821, 961
NdeII	GATC	1 cut(s)	636
NlaIII	CATG	2 cut(s)	203, 1119
NlaIV	GGNNCC	1 cut(s)	320
PagI	TCATGA	1 cut(s)	199
PfeI	GAWTC	2 cut(s)	682, 791
PkrI	GCNGC	4 cut(s)	151, 487, 1075, 1114
PleI	GAGTC	3 cut(s)	400, 664, 723
PpsI	GAGTC	3 cut(s)	400, 664, 723
Psp124BI	GAGCTC	1 cut(s)	854
PspN4I	GGNNCC	1 cut(s)	320
PspPI	GGNCC	2 cut(s)	252, 746
PstI	CTGCAG	1 cut(s)	1114
RsaI	GTAC	3 cut(s)	497, 841, 1003
RsaNI	GTAC	3 cut(s)	496, 840, 1002
RseI	CAYNNNNRTG	2 cut(s)	198, 1054
SacI	GAGCTC	1 cut(s)	854
SaqAI	TTAA	4 cut(s)	14, 44, 50, 375
SatI	GCNGC	4 cut(s)	150, 486, 1074, 1113
Sau3AI	GATC	1 cut(s)	636
Sau96I	GGNCC	2 cut(s)	252, 746
ScaI	AGTACT	1 cut(s)	1003
SchI	GAGTC	3 cut(s)	400, 665, 724
SduI	GDGCHC	1 cut(s)	854
SfaNI	GCATC	4 cut(s)	343, 472, 510, 1046
SfcI	CTRYAG	1 cut(s)	1110
SinI	GGWCC	1 cut(s)	252
SmiMI	CAYNNNNRTG	2 cut(s)	198, 1054
SmlI	CTYRAG	4 cut(s)	49, 506, 645, 1066
SmoI	CTYRAG	4 cut(s)	49, 506, 645, 1066
Sse9I	AATT	8 cut(s)	98, 135, 257, 324, 672, 767, 868, 965
SsiI	CCGC	3 cut(s)	31, 493, 813
SspMI	CTAG	2 cut(s)	36, 561
SstI	GAGCTC	1 cut(s)	854
TaaI	ACNGT	4 cut(s)	20, 466, 738, 914
TaiI	ACGT	1 cut(s)	1042
TaqI	TCGA	1 cut(s)	384
TasI	AATT	8 cut(s)	98, 135, 257, 324, 672, 767, 868, 965
TatI	WGTACW	1 cut(s)	1001
TfiI	GAWTC	2 cut(s)	682, 791
Tru1I	TTAA	4 cut(s)	14, 44, 50, 375
Tru9I	TTAA	4 cut(s)	14, 44, 50, 375
TscAI	CASTG	6 cut(s)	25, 130, 594, 743, 862, 919
TseI	GCWGC	4 cut(s)	149, 485, 1073, 1112
TspDTI	ATGAA	4 cut(s)	188, 713, 951, 1047
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	6 cut(s)	25, 130, 594, 743, 862, 919
Vha464I	CTTAAG	1 cut(s)	49
VpaK11BI	GGWCC	1 cut(s)	252
XagI	CCTNNNNNAGG	1 cut(s)	200
XapI	RAATTY	1 cut(s)	257
XspI	CTAG	2 cut(s)	36, 561
ZrmI	AGTACT	1 cut(s)	1003

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.