Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

17133103 .. 17134212

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g13590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 660 bp

ATGGCATTGGCTCTAAACAGCATAATCCCCCACACCACAGCGTTAAGCCTAAGCACTTCTCTGCCCTCTCCCAAAATGCCCTCCAGCCCCCAATTCCAACAGCCTCACAACCGCCGCCAGAGCGGTCCGATTGTCCAGAGCGGCGCCTCTTCCTCCTCCAACACCGCCGTCTCAGATGTTAAGCTGCATCTCCAGGAGGAGGACCACATCAATGGCTTCAATCCCACTTCCACGTTTGCTCCTGCGTGGTCCGAATTTGCCAGAAATGTGTCCGGTGAATGGGATGGCCATGGAGCGGACTTCACAAAGGAAGGGTACCCAATAGAACTTCCCGAGAATGTAGTGCCTGAATCTTACAGGGAGTGGGAGGTTAAGGTTTTCGATTGGCAGACTCAATGCCCCACTCTTGCTAACCCAGATGAGCACATTCTTTTATACAAGAATATAGAGCTACTTCCTACTGTTGGATGTGAAGCTGATGCTGCTACTCGATATAGAGTCATTGAGAAGAATGTTGGTGGTCTGAGTAACCAAGTTTTTGCCTTTGCATATCAGTCTAGCGGATGTTATGTGTCTGTCTTGCCAATTCAGGATAAGGGTATGTATAAGTTACAGGAGTTGGAGTATTGCTTGATCGATCCCATCAGAACTCAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

220

Amino Acids

24.36

Weight (kDa)

4.99

Isoelectric Point (pI)

58.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	2 cut(s)	143, 315
AccBSI	CCGCTC	3 cut(s)	123, 141, 296
AciI	CCGC	7 cut(s)	112, 115, 123, 141, 165, 296, 561
AclWI	GGATC	1 cut(s)	632
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	254
AcyI	GRCGYC	1 cut(s)	144
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	4 cut(s)	199, 279, 295, 464
AgsI	TTSAA	1 cut(s)	220
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	184, 451, 476
AluI	AGCT	3 cut(s)	184, 451, 476
Alw21I	GWGCWC	1 cut(s)	426
Alw26I	GTCTC	1 cut(s)	175
AlwI	GGATC	1 cut(s)	632
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	2 cut(s)	184, 482
ApoI	RAATTY	1 cut(s)	254
Asp718I	GGTACC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	146
AspS9I	GGNCC	3 cut(s)	125, 202, 249
AsuHPI	GGTGA	1 cut(s)	287
AvaI	CYCGRG	1 cut(s)	332
AvaII	GGWCC	3 cut(s)	125, 202, 249
BalI	TGGCCA	1 cut(s)	288
BanI	GGYRCC	2 cut(s)	143, 315
Bbv12I	GWGCWC	1 cut(s)	426
BbvI	GCAGC	2 cut(s)	171, 469
BccI	CCATC	2 cut(s)	278, 650
BceAI	ACGGC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	194
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	558
BfoI	RGCGCY	1 cut(s)	147
BisI	GCNGC	4 cut(s)	115, 142, 185, 483
BlsI	GCNGC	4 cut(s)	116, 143, 186, 484
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	3 cut(s)	125, 202, 249
BmeT110I	CYCGRG	1 cut(s)	332
BmgT120I	GGNCC	3 cut(s)	125, 202, 249
BmiI	GGNNCC	2 cut(s)	145, 317
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	2 cut(s)	196, 469
BpmI	CTGGAG	2 cut(s)	67, 176
Bpu10I	CCTNAGC	1 cut(s)	50
Bsa29I	ATCGAT	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	289
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	4 cut(s)	223, 253, 608, 638
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 279, 295, 464
BseBI	CCWGG	1 cut(s)	194
BseCI	ATCGAT	1 cut(s)	636
BseDI	CCNNGG	1 cut(s)	289
BseGI	GGATG	3 cut(s)	289, 473, 569
BseLI	CCNNNNNNNGG	4 cut(s)	199, 279, 295, 464
BseMII	CTCAG	2 cut(s)	186, 515
BseRI	GAGGAG	2 cut(s)	145, 212
BseXI	GCAGC	2 cut(s)	171, 469
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	2 cut(s)	143, 315
BshVI	ATCGAT	1 cut(s)	636
BsiHKAI	GWGCWC	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	4 cut(s)	199, 279, 295, 464
BsmAI	GTCTC	1 cut(s)	175
BsmBI	CGTCTC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	288
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	633, 637
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	7 cut(s)	112, 115, 123, 141, 165, 296, 561
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	2 cut(s)	185, 516
BspDI	ATCGAT	1 cut(s)	636
BspLI	GGNNCC	2 cut(s)	145, 317
BspPI	GGATC	1 cut(s)	632
BspT107I	GGYRCC	2 cut(s)	143, 315
BsrBI	CCGCTC	3 cut(s)	123, 141, 296
BssECI	CCNNGG	1 cut(s)	289
BssMI	GATC	2 cut(s)	633, 637
BssNI	GRCGYC	1 cut(s)	144
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	463
Bst6I	CTCTTC	1 cut(s)	154
BstACI	GRCGYC	1 cut(s)	144
BstDEI	CTNAG	3 cut(s)	50, 172, 524
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	289, 473, 569
BstH2I	RGCGCY	1 cut(s)	147
BstHHI	GCGC	1 cut(s)	146
BstKTI	GATC	2 cut(s)	636, 640
BstMAI	GTCTC	1 cut(s)	175
BstMBI	GATC	2 cut(s)	633, 637
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 482
BstNI	CCWGG	1 cut(s)	194
BstSCI	CCNGG	1 cut(s)	192
BstV1I	GCAGC	2 cut(s)	171, 469
BstXI	CCANNNNNNTGG	1 cut(s)	212
Bsu15I	ATCGAT	1 cut(s)	636
BsuRI	GGCC	1 cut(s)	288
BsuTUI	ATCGAT	1 cut(s)	636
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	3 cut(s)	289, 473, 569
CfoI	GCGC	1 cut(s)	146
Cfr13I	GGNCC	3 cut(s)	125, 202, 249
ClaI	ATCGAT	1 cut(s)	636
CpoI	CGGWCCG	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	316
CspI	CGGWCCG	1 cut(s)	125
CviAII	CATG	1 cut(s)	290
CviJI	RGCY	9 cut(s)	11, 48, 87, 103, 184, 216, 288, 451, 476
CviKI_1	RGCY	9 cut(s)	11, 48, 87, 103, 184, 216, 288, 451, 476
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	3 cut(s)	50, 172, 524
DinI	GGCGCC	1 cut(s)	145
DpnI	GATC	2 cut(s)	635, 639
DpnII	GATC	2 cut(s)	633, 637
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	289
Eco47I	GGWCC	3 cut(s)	125, 202, 249
Eco88I	CYCGRG	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	289
EgeI	GGCGCC	1 cut(s)	145
EheI	GGCGCC	1 cut(s)	145
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	1 cut(s)	293
FaiI	YATR	9 cut(s)	23, 291, 436, 446, 495, 550, 570, 602, 606
FatI	CATG	1 cut(s)	289
Fnu4HI	GCNGC	4 cut(s)	115, 142, 185, 483
FokI	GGATG	3 cut(s)	296, 480, 576
Fsp4HI	GCNGC	4 cut(s)	115, 142, 185, 483
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	145
GluI	GCNGC	4 cut(s)	115, 142, 185, 483
GsuI	CTGGAG	2 cut(s)	67, 176
HaeII	RGCGCY	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	146
Hin1I	GRCGYC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	293
Hin6I	GCGC	1 cut(s)	144
HinP1I	GCGC	1 cut(s)	144
HinfI	GANTC	3 cut(s)	350, 391, 498
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	1 cut(s)	287
Hpy188I	TCNGA	5 cut(s)	129, 175, 253, 525, 647
Hpy188III	TCNNGA	3 cut(s)	136, 332, 590
HpyAV	CCTTC	1 cut(s)	305
HpyCH4III	ACNGT	1 cut(s)	463
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	2 cut(s)	187, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 482
HpyF3I	CTNAG	3 cut(s)	50, 172, 524
HpySE526I	ACGT	1 cut(s)	233
Hsp92I	GRCGYC	1 cut(s)	144
Hsp92II	CATG	1 cut(s)	293
HspAI	GCGC	1 cut(s)	144
KasI	GGCGCC	1 cut(s)	143
KpnI	GGTACC	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	633, 637
LmnI	GCTCC	2 cut(s)	244, 293
Lsp1109I	GCAGC	2 cut(s)	171, 469
LweI	GCATC	2 cut(s)	196, 469
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	527, 609
MalI	GATC	2 cut(s)	635, 639
MbiI	CCGCTC	3 cut(s)	123, 141, 296
MboI	GATC	2 cut(s)	633, 637
MboII	GAAGA	2 cut(s)	141, 520
MhlI	GDGCHC	1 cut(s)	426
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	4 cut(s)	92, 254, 585, 653
MluNI	TGGCCA	1 cut(s)	288
Mly113I	GGCGCC	1 cut(s)	144
MlyI	GAGTC	2 cut(s)	385, 507
MmeI	TCCRAC	4 cut(s)	121, 183, 445, 600
MnlI	CCTC	9 cut(s)	76, 91, 114, 157, 163, 166, 190, 193, 361
Mox20I	TGGCCA	1 cut(s)	288
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	3 cut(s)	44, 180, 372
MslI	CAYNNNNRTG	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	2 cut(s)	120, 482
NarI	GGCGCC	1 cut(s)	144
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	633, 637
NlaIII	CATG	1 cut(s)	293
NlaIV	GGNNCC	2 cut(s)	145, 317
PfeI	GAWTC	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	4 cut(s)	116, 143, 186, 484
PleI	GAGTC	2 cut(s)	385, 506
PluTI	GGCGCC	1 cut(s)	147
PpsI	GAGTC	2 cut(s)	385, 506
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	145, 317
PspPI	GGNCC	3 cut(s)	125, 202, 249
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
RseI	CAYNNNNRTG	1 cut(s)	210
Rsr2I	CGGWCCG	1 cut(s)	125
RsrII	CGGWCCG	1 cut(s)	125
SaqAI	TTAA	3 cut(s)	44, 180, 372
SatI	GCNGC	4 cut(s)	115, 142, 185, 483
Sau3AI	GATC	2 cut(s)	633, 637
Sau96I	GGNCC	3 cut(s)	125, 202, 249
SchI	GAGTC	2 cut(s)	385, 507
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	426
SetI	ASST	6 cut(s)	186, 236, 372, 378, 453, 478
SfaNI	GCATC	2 cut(s)	196, 469
SfoI	GGCGCC	1 cut(s)	145
SinI	GGWCC	3 cut(s)	125, 202, 249
SmiMI	CAYNNNNRTG	1 cut(s)	210
Sse9I	AATT	4 cut(s)	92, 254, 585, 653
SsiI	CCGC	7 cut(s)	112, 115, 123, 141, 165, 296, 561
SspDI	GGCGCC	1 cut(s)	143
SspMI	CTAG	1 cut(s)	558
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	463
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	3 cut(s)	381, 490, 636
TasI	AATT	4 cut(s)	92, 254, 585, 653
TauI	GCSGC	2 cut(s)	117, 144
TfiI	GAWTC	1 cut(s)	350
Tru1I	TTAA	3 cut(s)	44, 180, 372
Tru9I	TTAA	3 cut(s)	44, 180, 372
TseI	GCWGC	2 cut(s)	184, 482
VpaK11BI	GGWCC	3 cut(s)	125, 202, 249
XapI	RAATTY	1 cut(s)	254
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.