Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

49100693 .. 49105395

Gene Structure 4703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000009220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGCAATGTTATTTTTTATATCAATTGCAGCAACAAAAGCATAAAATTGTGAGGAGGAAAAAGAAAGATACATATGATGAGGATTTTGATCATGATGATTTGGACAAGCTGCCACCCAACTTGAAGGATGGGATCACCATCCACACAACCTTAGGCGAGGAATTATTTGGATATCCAAAGAAGGTCGCCATCTTCAGAAGGGATGTGTATGCCATGACCAACATGAAGGAGCTTTCTGCCGGTAGCGTTGTGATGTATATGAGAAATGTGTCCAGTGAATGGAATGGCTATGGACCAGACTTCACAACCGAAGGGAACCCGATTGAACTCCCAAAAAAGGTTGTGCCTAATTCTTACAAGGAGTGGGAGGTTAAGGTTTTCGACTGGCAGACTCAATGTCCCACTCTTGCTGACCCAGAAGACCAAGTTCTTGCCTACAAGACGATAGTGCTACTTCCCACAGTTAGATGTGAAGCCGATGCTGCTACACGGTACAACATTCTTAAGAGGAATGTGGGTGGTGTGAACAACAAAGTTTCTGCCTTTGCGTATCAGTCTAGTAGATGTTATGTGTCTGTTTTGCCAGTGGAGGATAAGAGTTTGAATACGTTGTTGGAAGTAGAGTATTGCTTGATCAATCCTCAAGATAAGGAGTCTCGTGTGAGGATAGTTCAAGTGATTCGCATAGACAATATGAAGATGGTATTGCAGAGTCTTAGAGTTCTTTGTGAACAGTGGTATGGGCCATTCAGAAATGGGGAGCAATTAGGTGGATGTGTCATCCGTGATTCTGCTTTTGCTTCTACGCCCGCATTGGAAGCTTCAAAAGTTGTTGGTACTTGGTGGAGCTCCAGTGCTGTTACCACATTTAATGGTTCTCAAAATGTGGGCATACTCCAGGATGGCAAGATGTGTAGCCTCATGATCCTCAAGTTCAAGATGCAGCCAACCATGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

320

Amino Acids

36.43

Weight (kDa)

8.01

Isoelectric Point (pI)

42.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	279
AciI	CCGC	1 cut(s)	810
AclWI	GGATC	2 cut(s)	140, 919
AcuI	CTGAAG	1 cut(s)	178
AfaI	GTAC	2 cut(s)	494, 838
AfiI	CCNNNNNNNGG	2 cut(s)	279, 337
AflII	CTTAAG	1 cut(s)	503
AgsI	TTSAA	6 cut(s)	124, 326, 604, 674, 825, 937
AhdI	GACNNNNNGTC	1 cut(s)	396
AjnI	CCWGG	1 cut(s)	897
AjuI	GAANNNNNNNTTGG	2 cut(s)	596, 628
AluBI	AGCT	4 cut(s)	109, 232, 821, 849
AluI	AGCT	4 cut(s)	109, 232, 821, 849
Alw21I	GWGCWC	1 cut(s)	851
Alw26I	GTCTC	1 cut(s)	660
AlwI	GGATC	2 cut(s)	140, 919
AoxI	GGCC	1 cut(s)	743
ApeKI	GCWGC	4 cut(s)	28, 109, 482, 943
AspS9I	GGNCC	2 cut(s)	293, 743
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	293
AxyI	CCTNAGG	1 cut(s)	151
BanII	GRGCYC	1 cut(s)	851
BauI	CACGAG	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	426
Bbv12I	GWGCWC	1 cut(s)	851
BbvI	GCAGC	4 cut(s)	40, 96, 469, 955
BccI	CCATC	5 cut(s)	122, 146, 197, 694, 896
BciT130I	CCWGG	1 cut(s)	899
BclI	TGATCA	2 cut(s)	88, 633
BcoDI	GTCTC	1 cut(s)	660
BfaI	CTAG	1 cut(s)	558
BfrI	CTTAAG	1 cut(s)	503
BisI	GCNGC	4 cut(s)	29, 110, 483, 944
BlsI	GCNGC	4 cut(s)	30, 111, 484, 945
Bme1390I	CCNGG	1 cut(s)	899
Bme18I	GGWCC	1 cut(s)	293
BmeRI	GACNNNNNGTC	1 cut(s)	396
BmgT120I	GGNCC	2 cut(s)	293, 743
BmiI	GGNNCC	1 cut(s)	317
BmrFI	CCNGG	1 cut(s)	899
BmsI	GCATC	2 cut(s)	469, 930
BpiI	GAAGAC	1 cut(s)	426
BpmI	CTGGAG	2 cut(s)	835, 881
BpuEI	CTTGAG	2 cut(s)	627, 914
BsaBI	GATNNNNATC	2 cut(s)	87, 137
BsaXI	ACNNNNNCTCC	2 cut(s)	838, 868
Bsc4I	CCNNNNNNNGG	2 cut(s)	279, 337
Bse118I	RCCGGY	1 cut(s)	239
Bse1I	ACTGG	4 cut(s)	273, 389, 584, 852
Bse21I	CCTNAGG	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	11
Bse8I	GATNNNNATC	2 cut(s)	87, 137
BseBI	CCWGG	1 cut(s)	899
BseGI	GGATG	6 cut(s)	133, 138, 208, 779, 780, 907
BseJI	GATNNNNATC	2 cut(s)	87, 137
BseLI	CCNNNNNNNGG	2 cut(s)	279, 337
BseMI	GCAATG	1 cut(s)	11
BseNI	ACTGG	4 cut(s)	273, 389, 584, 852
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	4 cut(s)	40, 96, 469, 955
BshFI	GGCC	1 cut(s)	745
BsiHKAI	GWGCWC	1 cut(s)	851
BsiSI	CCGG	1 cut(s)	240
BslFI	GGGAC	1 cut(s)	384
BslI	CCNNNNNNNGG	2 cut(s)	279, 337
BsmAI	GTCTC	1 cut(s)	660
BsmFI	GGGAC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	745
Bsp1286I	GDGCHC	1 cut(s)	851
Bsp143I	GATC	4 cut(s)	88, 132, 633, 924
BspACI	CCGC	1 cut(s)	810
BspANI	GGCC	1 cut(s)	745
BspHI	TCATGA	2 cut(s)	91, 921
BspLI	GGNNCC	1 cut(s)	317
BspPI	GGATC	2 cut(s)	140, 919
BspTI	CTTAAG	1 cut(s)	503
BsrDI	GCAATG	1 cut(s)	11
BsrFI	RCCGGY	1 cut(s)	239
BsrI	ACTGG	4 cut(s)	273, 389, 584, 852
BssAI	RCCGGY	1 cut(s)	239
BssMI	GATC	4 cut(s)	88, 132, 633, 924
BssSI	CACGAG	1 cut(s)	657
Bst2BI	CACGAG	1 cut(s)	657
Bst2UI	CCWGG	1 cut(s)	899
Bst4CI	ACNGT	3 cut(s)	463, 492, 735
BstAFI	CTTAAG	1 cut(s)	503
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	2 cut(s)	151, 716
BstF5I	GGATG	6 cut(s)	133, 138, 208, 779, 780, 907
BstKTI	GATC	4 cut(s)	91, 135, 636, 927
BstMAI	GTCTC	1 cut(s)	660
BstMBI	GATC	4 cut(s)	88, 132, 633, 924
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 482, 818
BstNI	CCWGG	1 cut(s)	899
BstSCI	CCNGG	1 cut(s)	897
BstV1I	GCAGC	4 cut(s)	40, 96, 469, 955
BstV2I	GAAGAC	1 cut(s)	426
Bsu36I	CCTNAGG	1 cut(s)	151
BsuRI	GGCC	1 cut(s)	745
BtsCI	GGATG	6 cut(s)	133, 138, 208, 779, 780, 907
BtsIMutI	CAGTG	4 cut(s)	280, 591, 740, 859
Cac8I	GCNNGC	1 cut(s)	810
CciI	TCATGA	2 cut(s)	91, 921
Cfr10I	RCCGGY	1 cut(s)	239
Cfr13I	GGNCC	2 cut(s)	293, 743
Csp6I	GTAC	2 cut(s)	493, 837
CspCI	CAANNNNNGTGG	2 cut(s)	102, 137
CviAII	CATG	5 cut(s)	92, 214, 223, 922, 952
CviJI	RGCY	9 cut(s)	109, 232, 288, 476, 745, 821, 849, 918, 946
CviKI_1	RGCY	9 cut(s)	109, 232, 288, 476, 745, 821, 849, 918, 946
CviQI	GTAC	2 cut(s)	493, 837
DdeI	CTNAG	2 cut(s)	151, 716
DpnI	GATC	4 cut(s)	90, 134, 635, 926
DpnII	GATC	4 cut(s)	88, 132, 633, 924
DriI	GACNNNNNGTC	1 cut(s)	396
Eam1105I	GACNNNNNGTC	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	849
Eco24I	GRGCYC	1 cut(s)	851
Eco32I	GATATC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	293
Eco53kI	GAGCTC	1 cut(s)	849
Eco57I	CTGAAG	1 cut(s)	178
Eco81I	CCTNAGG	1 cut(s)	151
EcoICRI	GAGCTC	1 cut(s)	849
EcoRII	CCWGG	1 cut(s)	897
EcoRV	GATATC	1 cut(s)	173
EcoT38I	GRGCYC	1 cut(s)	851
FaeI	CATG	5 cut(s)	95, 217, 226, 925, 955
FaqI	GGGAC	1 cut(s)	384
FatI	CATG	5 cut(s)	91, 213, 222, 921, 951
FauI	CCCGC	1 cut(s)	817
FauNDI	CATATG	1 cut(s)	73
FbaI	TGATCA	2 cut(s)	88, 633
Fnu4HI	GCNGC	4 cut(s)	29, 110, 483, 944
FokI	GGATG	6 cut(s)	125, 140, 215, 767, 786, 914
FriOI	GRGCYC	1 cut(s)	851
Fsp4HI	GCNGC	4 cut(s)	29, 110, 483, 944
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	4 cut(s)	29, 110, 483, 944
GsuI	CTGGAG	2 cut(s)	835, 881
HaeIII	GGCC	1 cut(s)	745
HapII	CCGG	1 cut(s)	240
Hin1II	CATG	5 cut(s)	95, 217, 226, 925, 955
HindIII	AAGCTT	1 cut(s)	819
HinfI	GANTC	5 cut(s)	391, 653, 679, 712, 788
HpaII	CCGG	1 cut(s)	240
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	2 cut(s)	526, 731
Hpy188I	TCNGA	2 cut(s)	197, 752
Hpy188III	TCNNGA	4 cut(s)	92, 644, 922, 937
Hpy8I	GTNNAC	2 cut(s)	526, 731
HpyAV	CCTTC	5 cut(s)	118, 175, 192, 220, 305
HpyCH4III	ACNGT	3 cut(s)	463, 492, 735
HpyCH4IV	ACGT	1 cut(s)	608
HpyCH4V	TGCA	4 cut(s)	4, 28, 709, 943
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 482, 818
HpyF3I	CTNAG	2 cut(s)	151, 716
HpySE526I	ACGT	1 cut(s)	608
Hsp92II	CATG	5 cut(s)	95, 217, 226, 925, 955
Ksp22I	TGATCA	2 cut(s)	88, 633
Kzo9I	GATC	4 cut(s)	88, 132, 633, 924
LmnI	GCTCC	4 cut(s)	229, 760, 846, 854
LpnPI	CCDG	9 cut(s)	253, 286, 309, 370, 429, 597, 865, 884, 911
Lsp1109I	GCAGC	4 cut(s)	40, 96, 469, 955
LweI	GCATC	2 cut(s)	469, 930
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	608
MaeIII	GTNAC	1 cut(s)	859
MalI	GATC	4 cut(s)	90, 134, 635, 926
MboI	GATC	4 cut(s)	88, 132, 633, 924
MboII	GAAGA	3 cut(s)	184, 431, 709
MfeI	CAATTG	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	851
MluCI	AATT	5 cut(s)	23, 45, 161, 349, 764
MlyI	GAGTC	3 cut(s)	385, 662, 721
MmeI	TCCRAC	1 cut(s)	594
MseI	TTAA	3 cut(s)	372, 504, 870
MspCI	CTTAAG	1 cut(s)	503
MspI	CCGG	1 cut(s)	240
MspR9I	CCNGG	1 cut(s)	899
MunI	CAATTG	1 cut(s)	23
MvaI	CCWGG	1 cut(s)	899
MwoI	GCNNNNNNNGC	3 cut(s)	37, 482, 818
NdeI	CATATG	1 cut(s)	73
NdeII	GATC	4 cut(s)	88, 132, 633, 924
NlaIII	CATG	5 cut(s)	95, 217, 226, 925, 955
NlaIV	GGNNCC	1 cut(s)	317
PagI	TCATGA	2 cut(s)	91, 921
PfeI	GAWTC	2 cut(s)	679, 788
PflMI	CCANNNNNTGG	1 cut(s)	279
PfoI	TCCNGGA	1 cut(s)	897
PkrI	GCNGC	4 cut(s)	30, 111, 484, 945
PleI	GAGTC	3 cut(s)	385, 661, 720
PpsI	GAGTC	3 cut(s)	385, 661, 720
Psp124BI	GAGCTC	1 cut(s)	851
Psp6I	CCWGG	1 cut(s)	897
PspGI	CCWGG	1 cut(s)	897
PspN4I	GGNNCC	1 cut(s)	317
PspPI	GGNCC	2 cut(s)	293, 743
RsaI	GTAC	2 cut(s)	494, 838
RsaNI	GTAC	2 cut(s)	493, 837
SacI	GAGCTC	1 cut(s)	851
SaqAI	TTAA	3 cut(s)	372, 504, 870
SatI	GCNGC	4 cut(s)	29, 110, 483, 944
Sau3AI	GATC	4 cut(s)	88, 132, 633, 924
Sau96I	GGNCC	2 cut(s)	293, 743
SchI	GAGTC	3 cut(s)	385, 662, 721
ScrFI	CCNGG	1 cut(s)	899
SduI	GDGCHC	1 cut(s)	851
SfaNI	GCATC	2 cut(s)	469, 930
SinI	GGWCC	1 cut(s)	293
SmlI	CTYRAG	3 cut(s)	503, 642, 929
SmoI	CTYRAG	3 cut(s)	503, 642, 929
Sse9I	AATT	5 cut(s)	23, 45, 161, 349, 764
SsiI	CCGC	1 cut(s)	810
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	851
StyD4I	CCNGG	1 cut(s)	897
TaaI	ACNGT	3 cut(s)	463, 492, 735
TaiI	ACGT	1 cut(s)	611
TaqI	TCGA	1 cut(s)	381
TasI	AATT	5 cut(s)	23, 45, 161, 349, 764
TfiI	GAWTC	2 cut(s)	679, 788
Tru1I	TTAA	3 cut(s)	372, 504, 870
Tru9I	TTAA	3 cut(s)	372, 504, 870
TscAI	CASTG	4 cut(s)	280, 591, 740, 859
TseI	GCWGC	4 cut(s)	28, 109, 482, 943
TspDTI	ATGAA	2 cut(s)	239, 710
TspGWI	ACGGA	1 cut(s)	773
TspRI	CASTG	4 cut(s)	280, 591, 740, 859
Van91I	CCANNNNNTGG	1 cut(s)	279
Vha464I	CTTAAG	1 cut(s)	503
VpaK11BI	GGWCC	1 cut(s)	293
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.