Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

27102710 .. 27105370

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1140400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGCATTGGCTCTAAACAGCATAATCCCCCACACCACAGCTTTAAGCCTAAGCACTACTCTGCCCTCTCCCAAAATGCAATCCAGCCCCCAATGCCAACAGCCTCACAACCGCCGCCAGAGCGGTCAGATTGTCCAGAGCGCCGCCTCTTCCTCCTCCAACATCGCCGTCTCAGATGTTAAGCTGCAGCTCCAGGAGGAGGACCACAGCAACGGCTTCAATCCCACTTCTACTTTTGCTCCTGCGTGGTCTGAATTTGCCAGAAATGTGTCCGGTGAATGGGATGGCCATGGAGCGGACTTCACAAAGGAAGGGTATCCTATAGAACTTCCAGAGAATGTAGTGCCTGAAGCTTACAGGGAGTGGGAGGTTAAGGTTTTCGATTGGCAGACTCAATGCCCCACTCTTGCTAACCCAGATGAGCACATTCTTTTATACAAGAATATAGAGCTACTTCCTACCGTTGGATGTGAAGCTGATGCTGCTACACGATATAGAGTCATTGAGAAGAATGTTGGTGGTCTGAGTAACGAAGTTTTTGCCTTTGCATATCAGTCTAGCGGATGTTATGTGTCTGTCTTGCCAATTCAGGATAAGGGTACGTATAAGTTACAGGAGTTGGAAATAATTCAGGTCATCCGCATAGAGAATGAGAAGATGATGCTGCAGAATATTAGAGTTTACTGTGAGAATTGGCATGGGCCATTCAGAAATGGGGATCAGTTAGGTGGATGTGCTATCCGTGATTCTGCTTTTGCTTGTACGGCTGCACTGGAAGCTTCAGAAGTTGTTGGAACTTGGCGGGGTCTCAGTGCTGTTGCCAGTTTCCGTGGTACTCAAAATAATGTTCTTCAAGAACTTTTAGTCAACAGTGAGCAGAGCTCCATGAGAGATGAAAGTGGTCTCGTATTGCTTCCCAAGCGGCTGTGGTGTTCCATAAAAGAAAGTAAAGATGGTGATACTTGCAGCGAGGTAGGATGGCTGTTAGATCATGGACATGCCATCACATCAAGATGCACCTTCTCAAGCACAGCAACGCCAAAGGAAATCTCAGTAGCGAATGAAACTGCAGTTTTAAAGGGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

363

Amino Acids

39.85

Weight (kDa)

5.07

Isoelectric Point (pI)

54.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	123, 296
AciI	CCGC	9 cut(s)	112, 115, 123, 144, 296, 561, 640, 802, 922
AclWI	GGATC	1 cut(s)	726
AcoI	YGGCCR	1 cut(s)	286
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	2 cut(s)	369, 765
AfaI	GTAC	3 cut(s)	601, 763, 835
AfiI	CCNNNNNNNGG	4 cut(s)	199, 279, 295, 464
AgsI	TTSAA	2 cut(s)	220, 854
AjnI	CCWGG	1 cut(s)	192
AluBI	AGCT	8 cut(s)	41, 184, 190, 353, 451, 476, 779, 882
AluI	AGCT	8 cut(s)	41, 184, 190, 353, 451, 476, 779, 882
Alw21I	GWGCWC	2 cut(s)	426, 884
Alw26I	GTCTC	3 cut(s)	175, 812, 908
AlwI	GGATC	1 cut(s)	726
AoxI	GGCC	2 cut(s)	286, 701
ApeKI	GCWGC	6 cut(s)	184, 187, 482, 664, 767, 966
ApoI	RAATTY	1 cut(s)	254
Asp700I	GAANNNNTTC	1 cut(s)	627
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	202, 701
AsuHPI	GGTGA	2 cut(s)	287, 968
AvaII	GGWCC	1 cut(s)	202
BaeGI	GKGCMC	1 cut(s)	1085
BalI	TGGCCA	1 cut(s)	288
BanII	GRGCYC	1 cut(s)	884
Bbv12I	GWGCWC	2 cut(s)	426, 884
BbvI	GCAGC	6 cut(s)	171, 199, 469, 651, 754, 978
BccI	CCATC	4 cut(s)	278, 947, 972, 1010
BceAI	ACGGC	3 cut(s)	152, 229, 780
BcgI	CGANNNNNNTGC	2 cut(s)	521, 555
BciT130I	CCWGG	1 cut(s)	194
BciVI	GTATCC	1 cut(s)	327
BcoDI	GTCTC	3 cut(s)	175, 812, 908
BfaI	CTAG	1 cut(s)	558
BfmI	CTRYAG	4 cut(s)	185, 321, 665, 1068
BfoI	RGCGCY	1 cut(s)	144
BfuI	GTATCC	1 cut(s)	327
BisI	GCNGC	9 cut(s)	115, 144, 185, 188, 483, 665, 768, 923, 967
BlsI	GCNGC	9 cut(s)	116, 145, 186, 189, 484, 666, 769, 924, 968
Bme1390I	CCNGG	1 cut(s)	194
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	202, 701
BmrFI	CCNGG	1 cut(s)	194
BmsI	GCATC	3 cut(s)	469, 651, 1004
BplI	GAGNNNNNCTC	2 cut(s)	866, 898
BpmI	CTGGAG	1 cut(s)	176
Bpu10I	CCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	1 cut(s)	1009
BsaAI	YACGTR	1 cut(s)	603
BsaI	GGTCTC	2 cut(s)	812, 908
BsaJI	CCNNGG	2 cut(s)	289, 829
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	223, 253
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 279, 295, 464
Bse1I	ACTGG	2 cut(s)	777, 822
BseBI	CCWGG	1 cut(s)	194
BseDI	CCNNGG	2 cut(s)	289, 829
BseGI	GGATG	6 cut(s)	289, 473, 569, 636, 737, 983
BseLI	CCNNNNNNNGG	4 cut(s)	199, 279, 295, 464
BseMII	CTCAG	4 cut(s)	186, 515, 823, 1065
BseNI	ACTGG	2 cut(s)	777, 822
BseRI	GAGGAG	2 cut(s)	145, 212
BseSI	GKGCMC	1 cut(s)	1085
BseXI	GCAGC	6 cut(s)	171, 199, 469, 651, 754, 978
BsgI	GTGCAG	1 cut(s)	753
BshFI	GGCC	2 cut(s)	288, 703
BsiHKAI	GWGCWC	2 cut(s)	426, 884
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	4 cut(s)	199, 279, 295, 464
BsmAI	GTCTC	3 cut(s)	175, 812, 908
BsmBI	CGTCTC	1 cut(s)	175
BsnI	GGCC	2 cut(s)	288, 703
Bso31I	GGTCTC	2 cut(s)	812, 908
Bsp1286I	GDGCHC	3 cut(s)	426, 884, 1085
Bsp143I	GATC	2 cut(s)	718, 988
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	9 cut(s)	112, 115, 123, 144, 296, 561, 640, 802, 922
BspANI	GGCC	2 cut(s)	288, 703
BspCNI	CTCAG	4 cut(s)	185, 516, 822, 1064
BspMAI	CTGCAG	3 cut(s)	189, 669, 1072
BspPI	GGATC	1 cut(s)	726
BspTNI	GGTCTC	2 cut(s)	812, 908
BsrBI	CCGCTC	2 cut(s)	123, 296
BsrI	ACTGG	2 cut(s)	777, 822
BssECI	CCNNGG	2 cut(s)	289, 829
BssMI	GATC	2 cut(s)	718, 988
BssT1I	CCWWGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	194
Bst4CI	ACNGT	3 cut(s)	463, 686, 872
Bst6I	CTCTTC	1 cut(s)	154
BstBAI	YACGTR	1 cut(s)	603
BstDEI	CTNAG	5 cut(s)	50, 172, 524, 809, 1051
BstDSI	CCRYGG	2 cut(s)	289, 829
BstF5I	GGATG	6 cut(s)	289, 473, 569, 636, 737, 983
BstH2I	RGCGCY	1 cut(s)	144
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	721, 991
BstMAI	GTCTC	3 cut(s)	175, 812, 908
BstMBI	GATC	2 cut(s)	718, 988
BstMWI	GCNNNNNNNGC	6 cut(s)	93, 120, 482, 764, 776, 919
BstNI	CCWGG	1 cut(s)	194
BstNSI	RCATGY	1 cut(s)	1001
BstSCI	CCNGG	1 cut(s)	192
BstSFI	CTRYAG	4 cut(s)	185, 321, 665, 1068
BstSLI	GKGCMC	1 cut(s)	1085
BstSNI	TACGTA	1 cut(s)	603
BstV1I	GCAGC	6 cut(s)	171, 199, 469, 651, 754, 978
BsuI	GTATCC	1 cut(s)	327
BsuRI	GGCC	2 cut(s)	288, 703
BtgI	CCRYGG	2 cut(s)	289, 829
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	6 cut(s)	289, 473, 569, 636, 737, 983
BtsIMutI	CAGTG	3 cut(s)	770, 817, 877
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	2 cut(s)	202, 701
Csp6I	GTAC	3 cut(s)	600, 762, 834
CviAII	CATG	5 cut(s)	290, 698, 886, 992, 998
CviQI	GTAC	3 cut(s)	600, 762, 834
DdeI	CTNAG	5 cut(s)	50, 172, 524, 809, 1051
DpnI	GATC	2 cut(s)	720, 990
DpnII	GATC	2 cut(s)	718, 988
DraI	TTTAAA	1 cut(s)	1077
EaeI	YGGCCR	1 cut(s)	286
Eam1104I	CTCTTC	1 cut(s)	154
EarI	CTCTTC	1 cut(s)	154
Ecl136II	GAGCTC	1 cut(s)	882
Eco105I	TACGTA	1 cut(s)	603
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	884
Eco31I	GGTCTC	2 cut(s)	812, 908
Eco47I	GGWCC	1 cut(s)	202
Eco53kI	GAGCTC	1 cut(s)	882
Eco57I	CTGAAG	2 cut(s)	369, 765
EcoICRI	GAGCTC	1 cut(s)	882
EcoRII	CCWGG	1 cut(s)	192
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	884
ErhI	CCWWGG	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	175
FaeI	CATG	5 cut(s)	293, 701, 889, 995, 1001
FatI	CATG	5 cut(s)	289, 697, 885, 991, 997
FauI	CCCGC	1 cut(s)	795
Fnu4HI	GCNGC	9 cut(s)	115, 144, 185, 188, 483, 665, 768, 923, 967
FokI	GGATG	6 cut(s)	296, 480, 576, 623, 744, 990
FriOI	GRGCYC	1 cut(s)	884
Fsp4HI	GCNGC	9 cut(s)	115, 144, 185, 188, 483, 665, 768, 923, 967
FspBI	CTAG	1 cut(s)	558
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	9 cut(s)	115, 144, 185, 188, 483, 665, 768, 923, 967
GsuI	CTGGAG	1 cut(s)	176
HaeII	RGCGCY	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	288, 703
HapII	CCGG	1 cut(s)	273
HhaI	GCGC	1 cut(s)	143
Hin1II	CATG	5 cut(s)	293, 701, 889, 995, 1001
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HindIII	AAGCTT	2 cut(s)	351, 777
HinfI	GANTC	3 cut(s)	391, 498, 746
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	287, 968
Hpy166II	GTNNAC	2 cut(s)	682, 868
Hpy188I	TCNGA	6 cut(s)	129, 175, 253, 525, 710, 784
Hpy188III	TCNNGA	5 cut(s)	136, 332, 590, 854, 1011
Hpy8I	GTNNAC	2 cut(s)	682, 868
HpyAV	CCTTC	2 cut(s)	305, 1030
HpyCH4III	ACNGT	3 cut(s)	463, 686, 872
HpyCH4IV	ACGT	1 cut(s)	602
HpyCH4V	TGCA	8 cut(s)	79, 187, 548, 667, 770, 966, 1017, 1070
HpyF10VI	GCNNNNNNNGC	6 cut(s)	93, 120, 482, 764, 776, 919
HpyF3I	CTNAG	5 cut(s)	50, 172, 524, 809, 1051
HpySE526I	ACGT	1 cut(s)	602
Hsp92II	CATG	5 cut(s)	293, 701, 889, 995, 1001
HspAI	GCGC	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	718, 988
LmnI	GCTCC	4 cut(s)	195, 244, 293, 887
Lsp1109I	GCAGC	6 cut(s)	171, 199, 469, 651, 754, 978
LweI	GCATC	3 cut(s)	469, 651, 1004
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	602
MaeIII	GTNAC	2 cut(s)	527, 609
MalI	GATC	2 cut(s)	720, 990
MbiI	CCGCTC	2 cut(s)	123, 296
MboI	GATC	2 cut(s)	718, 988
MboII	GAAGA	4 cut(s)	141, 520, 667, 842
MhlI	GDGCHC	3 cut(s)	426, 884, 1085
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	4 cut(s)	254, 585, 627, 691
MluNI	TGGCCA	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	385, 507
MmeI	TCCRAC	4 cut(s)	183, 445, 600, 772
MnlI	CCTC	9 cut(s)	76, 114, 157, 163, 166, 190, 193, 361, 964
Mox20I	TGGCCA	1 cut(s)	288
MroXI	GAANNNNTTC	1 cut(s)	627
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	4 cut(s)	44, 180, 372, 1076
MslI	CAYNNNNRTG	2 cut(s)	996, 1012
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	1 cut(s)	194
MvaI	CCWGG	1 cut(s)	194
MwoI	GCNNNNNNNGC	6 cut(s)	93, 120, 482, 764, 776, 919
NcoI	CCATGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	718, 988
NlaIII	CATG	5 cut(s)	293, 701, 889, 995, 1001
NspI	RCATGY	1 cut(s)	1001
PdmI	GAANNNNTTC	1 cut(s)	627
PfeI	GAWTC	1 cut(s)	746
PfoI	TCCNGGA	1 cut(s)	192
PkrI	GCNGC	9 cut(s)	116, 145, 186, 189, 484, 666, 769, 924, 968
PleI	GAGTC	2 cut(s)	385, 506
PpsI	GAGTC	2 cut(s)	385, 506
Ppu21I	YACGTR	1 cut(s)	603
Psp124BI	GAGCTC	1 cut(s)	884
Psp6I	CCWGG	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	192
PspPI	GGNCC	2 cut(s)	202, 701
PstI	CTGCAG	3 cut(s)	189, 669, 1072
RsaI	GTAC	3 cut(s)	601, 763, 835
RsaNI	GTAC	3 cut(s)	600, 762, 834
RseI	CAYNNNNRTG	2 cut(s)	996, 1012
SacI	GAGCTC	1 cut(s)	884
SaqAI	TTAA	4 cut(s)	44, 180, 372, 1076
SatI	GCNGC	9 cut(s)	115, 144, 185, 188, 483, 665, 768, 923, 967
Sau3AI	GATC	2 cut(s)	718, 988
Sau96I	GGNCC	2 cut(s)	202, 701
SchI	GAGTC	2 cut(s)	385, 507
ScrFI	CCNGG	1 cut(s)	194
SduI	GDGCHC	3 cut(s)	426, 884, 1085
SfaNI	GCATC	3 cut(s)	469, 651, 1004
SfcI	CTRYAG	4 cut(s)	185, 321, 665, 1068
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	2 cut(s)	996, 1012
SmlI	CTYRAG	1 cut(s)	1024
SmoI	CTYRAG	1 cut(s)	1024
SnaBI	TACGTA	1 cut(s)	603
Sse9I	AATT	4 cut(s)	254, 585, 627, 691
SsiI	CCGC	9 cut(s)	112, 115, 123, 144, 296, 561, 640, 802, 922
SspI	AATATT	1 cut(s)	673
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	884
StyD4I	CCNGG	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	3 cut(s)	463, 686, 872
TaiI	ACGT	1 cut(s)	605
TaqI	TCGA	1 cut(s)	381
TasI	AATT	4 cut(s)	254, 585, 627, 691
TauI	GCSGC	3 cut(s)	117, 146, 925
TfiI	GAWTC	1 cut(s)	746
Tru1I	TTAA	4 cut(s)	44, 180, 372, 1076
Tru9I	TTAA	4 cut(s)	44, 180, 372, 1076
TscAI	CASTG	3 cut(s)	777, 817, 877
TseI	GCWGC	6 cut(s)	184, 187, 482, 664, 767, 966
TspDTI	ATGAA	2 cut(s)	909, 1077
TspGWI	ACGGA	2 cut(s)	731, 818
TspRI	CASTG	3 cut(s)	777, 817, 877
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	254
XceI	RCATGY	1 cut(s)	1001
XmnI	GAANNNNTTC	1 cut(s)	627
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.