Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Forward (+)

26803542 .. 26805874

Gene Structure 2333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGAAATATGAAGGAATGGATATGCTGATACGACACCGTTTCAAATCAAGAGCTTTAAGCTTAAGCACTTCCTTGCCTTCTTCTCCTCATAAAAAGCCTTCAAGCCCTCAATTTCCACACCCACAAAATCGTCGCACTGCTGCTCAAATTGTCCAGAGCGCTGCCTCTTCCTCTACCAAGACCACCCTCTCTGACCTTGAACACCACCTTCATGAGGAGGATCGCAGTAACAGCTTCAATCCCACCTCCACTTCTGCCTCTGCGTGGTCCGAATTTGCCAGAAATGTGTCCGGTGAATGGGACGGCTATGGAGCAGACTTCACAACCGAAGGGACCCCAATTGAACTCCCAGAAAGGGTTGTGCCTGATGCTTACAGAGAGTGGGAGGTTAAGGTTTTCGACTGGCAGACACAATGTCCCACTCTTGCTGACCAAGAAGACCAAGTTCTTGCCTACAAGACAATAGAGTTACTTCCCACAGTGGGATGTGAAGCCGATGCTGCTACGCGGTACAGCATCCTTGAGAGGAATGTGGGTGGCGTGAACAACAAAGTTTCTGCATTTGCGTATCAGTCTAGTGGATGTTATGTGTCTGTTTTGCCAGTGGAGGATAAGAGTATGAATAAGTTGTTGGAAGTGGAGTATTGCTTGATCAATCCTCATGATAAGGAGTCTCGTGTGAGGATAATTCAGGTGATTCGCATAGACAATATGAAGATGGTATTGCGGAGTCTTAGAGTTCTTTGTGAACAGTGGTATGGGCCATTCAGAAATGGGGAGCAATTAGGTGGATGTGCCATCCGTGATTCTGCTTTTGCTTCTACGCCCACATTGGAAGCTTCAAAAGTTGTTGGTACTTGGCGGAGCTCCAGTGCTGTTGCCAATTTTAATGGTTCACAAAATAACTTTCAAGAACTTTCAGGGGACAGTGAGCAGAACTCAGTAAGAGATGAAAGTGGTCTCATATTGCTTCCCAAGCAATTGTGGTGTTCAGTAAAAGAAAGTAAAGATGGCACTACTTACAGCGAGGTAGGATGGCTATTTGATGAAGGACGTGCCATCACATCAAGATGCACCTTCTCAAGCGCAGCAACTCTGAAGGCAAGTTTGCATTTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

372

Amino Acids

41.44

Weight (kDa)

5.71

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1117
AccII	CGCG	1 cut(s)	508
AciI	CCGC	3 cut(s)	508, 727, 862
AclWI	GGATC	1 cut(s)	228
AcsI	RAATTY	1 cut(s)	272
AcuI	CTGAAG	1 cut(s)	1118
AfaI	GTAC	2 cut(s)	512, 856
AfeI	AGCGCT	1 cut(s)	160
AfiI	CCNNNNNNNGG	5 cut(s)	214, 264, 297, 355, 482
AflII	CTTAAG	1 cut(s)	61
AgsI	TTSAA	7 cut(s)	43, 102, 200, 238, 344, 843, 911
AhdI	GACNNNNNGTC	1 cut(s)	414
AjiI	CACGTC	1 cut(s)	1055
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
AluBI	AGCT	5 cut(s)	53, 60, 234, 839, 867
AluI	AGCT	5 cut(s)	53, 60, 234, 839, 867
Alw21I	GWGCWC	1 cut(s)	869
Alw26I	GTCTC	2 cut(s)	678, 965
AlwI	GGATC	1 cut(s)	228
Aor51HI	AGCGCT	1 cut(s)	160
AoxI	GGCC	1 cut(s)	761
ApeKI	GCWGC	4 cut(s)	140, 161, 500, 1088
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	2 cut(s)	161, 1088
AspS9I	GGNCC	3 cut(s)	267, 333, 761
AsuHPI	GGTGA	2 cut(s)	305, 706
AvaII	GGWCC	2 cut(s)	267, 333
BanII	GRGCYC	1 cut(s)	869
BauI	CACGAG	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	444
Bbv12I	GWGCWC	1 cut(s)	869
BbvI	GCAGC	4 cut(s)	127, 148, 487, 1100
BccI	CCATC	5 cut(s)	712, 806, 1004, 1029, 1067
BceAI	ACGGC	1 cut(s)	319
BclI	TGATCA	1 cut(s)	651
BcoDI	GTCTC	2 cut(s)	678, 965
BfaI	CTAG	1 cut(s)	576
BfoI	RGCGCY	1 cut(s)	162
BfrI	CTTAAG	1 cut(s)	61
BisI	GCNGC	4 cut(s)	141, 162, 501, 1089
BlsI	GCNGC	4 cut(s)	142, 163, 502, 1090
Bme18I	GGWCC	2 cut(s)	267, 333
BmeRI	GACNNNNNGTC	1 cut(s)	414
BmgBI	CACGTC	1 cut(s)	1055
BmgT120I	GGNCC	3 cut(s)	267, 333, 761
BmiI	GGNNCC	2 cut(s)	334, 335
BmsI	GCATC	4 cut(s)	358, 487, 525, 1061
BpiI	GAAGAC	1 cut(s)	444
BplI	GAGNNNNNCTC	2 cut(s)	923, 955
BpmI	CTGGAG	1 cut(s)	853
BpuEI	CTTGAG	2 cut(s)	542, 1066
BsaI	GGTCTC	1 cut(s)	965
BsaWI	WCCGGW	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	856, 886
Bsc4I	CCNNNNNNNGG	5 cut(s)	214, 264, 297, 355, 482
Bse1I	ACTGG	3 cut(s)	407, 602, 870
BseGI	GGATG	6 cut(s)	491, 516, 587, 797, 798, 1040
BseLI	CCNNNNNNNGG	5 cut(s)	214, 264, 297, 355, 482
BseMII	CTCAG	1 cut(s)	954
BseNI	ACTGG	3 cut(s)	407, 602, 870
BseRI	GAGGAG	2 cut(s)	75, 230
BseXI	GCAGC	4 cut(s)	127, 148, 487, 1100
Bsh1236I	CGCG	1 cut(s)	508
BshFI	GGCC	1 cut(s)	763
BsiHKAI	GWGCWC	1 cut(s)	869
BsiSI	CCGG	1 cut(s)	291
BslFI	GGGAC	4 cut(s)	314, 346, 402, 938
BslI	CCNNNNNNNGG	5 cut(s)	214, 264, 297, 355, 482
BsmAI	GTCTC	2 cut(s)	678, 965
BsmFI	GGGAC	4 cut(s)	314, 346, 402, 938
BsnI	GGCC	1 cut(s)	763
Bso31I	GGTCTC	1 cut(s)	965
Bsp1286I	GDGCHC	1 cut(s)	869
Bsp143I	GATC	2 cut(s)	220, 651
BspACI	CCGC	3 cut(s)	508, 727, 862
BspANI	GGCC	1 cut(s)	763
BspCNI	CTCAG	1 cut(s)	953
BspFNI	CGCG	1 cut(s)	508
BspHI	TCATGA	2 cut(s)	211, 661
BspLI	GGNNCC	2 cut(s)	334, 335
BspPI	GGATC	1 cut(s)	228
BspTI	CTTAAG	1 cut(s)	61
BspTNI	GGTCTC	1 cut(s)	965
BsrI	ACTGG	3 cut(s)	407, 602, 870
BssMI	GATC	2 cut(s)	220, 651
BssSI	CACGAG	1 cut(s)	675
Bst2BI	CACGAG	1 cut(s)	675
Bst4CI	ACNGT	4 cut(s)	38, 481, 753, 929
Bst6I	CTCTTC	1 cut(s)	172
BstAFI	CTTAAG	1 cut(s)	61
BstDEI	CTNAG	2 cut(s)	734, 940
BstENI	CCTNNNNNAGG	1 cut(s)	212
BstF5I	GGATG	6 cut(s)	491, 516, 587, 797, 798, 1040
BstFNI	CGCG	1 cut(s)	508
BstH2I	RGCGCY	1 cut(s)	162
BstHHI	GCGC	2 cut(s)	161, 1088
BstKTI	GATC	2 cut(s)	223, 654
BstMAI	GTCTC	2 cut(s)	678, 965
BstMBI	GATC	2 cut(s)	220, 651
BstMWI	GCNNNNNNNGC	3 cut(s)	231, 500, 976
BstUI	CGCG	1 cut(s)	508
BstV1I	GCAGC	4 cut(s)	127, 148, 487, 1100
BstV2I	GAAGAC	1 cut(s)	444
BsuRI	GGCC	1 cut(s)	763
BtrI	CACGTC	1 cut(s)	1055
BtsCI	GGATG	6 cut(s)	491, 516, 587, 797, 798, 1040
BtsI	GCAGTG	1 cut(s)	135
BtsIMutI	CAGTG	6 cut(s)	135, 486, 609, 758, 877, 934
CciI	TCATGA	2 cut(s)	211, 661
CfoI	GCGC	2 cut(s)	161, 1088
Cfr13I	GGNCC	3 cut(s)	267, 333, 761
Csp6I	GTAC	2 cut(s)	511, 855
CviAII	CATG	2 cut(s)	212, 662
CviQI	GTAC	2 cut(s)	511, 855
DdeI	CTNAG	2 cut(s)	734, 940
DpnI	GATC	2 cut(s)	222, 653
DpnII	GATC	2 cut(s)	220, 651
DriI	GACNNNNNGTC	1 cut(s)	414
Eam1104I	CTCTTC	1 cut(s)	172
Eam1105I	GACNNNNNGTC	1 cut(s)	414
EarI	CTCTTC	1 cut(s)	172
EciI	GGCGGA	1 cut(s)	877
Ecl136II	GAGCTC	1 cut(s)	867
Eco24I	GRGCYC	1 cut(s)	869
Eco31I	GGTCTC	1 cut(s)	965
Eco47I	GGWCC	2 cut(s)	267, 333
Eco47III	AGCGCT	1 cut(s)	160
Eco53kI	GAGCTC	1 cut(s)	867
Eco57I	CTGAAG	1 cut(s)	1118
EcoICRI	GAGCTC	1 cut(s)	867
EcoNI	CCTNNNNNAGG	1 cut(s)	212
EcoO109I	RGGNCCY	1 cut(s)	333
EcoT38I	GRGCYC	1 cut(s)	869
FaeI	CATG	2 cut(s)	215, 665
FaqI	GGGAC	4 cut(s)	314, 346, 402, 938
FatI	CATG	2 cut(s)	211, 661
FbaI	TGATCA	1 cut(s)	651
Fnu4HI	GCNGC	4 cut(s)	141, 162, 501, 1089
FokI	GGATG	6 cut(s)	498, 503, 594, 785, 804, 1047
FriOI	GRGCYC	1 cut(s)	869
Fsp4HI	GCNGC	4 cut(s)	141, 162, 501, 1089
FspBI	CTAG	1 cut(s)	576
GlaI	GCGC	2 cut(s)	160, 1087
GluI	GCNGC	4 cut(s)	141, 162, 501, 1089
GsuI	CTGGAG	1 cut(s)	853
HaeII	RGCGCY	1 cut(s)	162
HaeIII	GGCC	1 cut(s)	763
HapII	CCGG	1 cut(s)	291
HhaI	GCGC	2 cut(s)	161, 1088
Hin1II	CATG	2 cut(s)	215, 665
Hin6I	GCGC	2 cut(s)	159, 1086
HinP1I	GCGC	2 cut(s)	159, 1086
HindIII	AAGCTT	2 cut(s)	58, 837
HinfI	GANTC	4 cut(s)	671, 697, 730, 806
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	2 cut(s)	305, 706
Hpy166II	GTNNAC	3 cut(s)	544, 749, 896
Hpy188I	TCNGA	4 cut(s)	193, 271, 770, 1098
Hpy188III	TCNNGA	6 cut(s)	48, 154, 212, 662, 911, 1068
Hpy8I	GTNNAC	3 cut(s)	544, 749, 896
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	8 cut(s)	5, 87, 108, 218, 323, 1043, 1087, 1093
HpyCH4III	ACNGT	4 cut(s)	38, 481, 753, 929
HpyCH4IV	ACGT	1 cut(s)	1054
HpyCH4V	TGCA	3 cut(s)	560, 1074, 1111
HpyF10VI	GCNNNNNNNGC	3 cut(s)	231, 500, 976
HpyF3I	CTNAG	2 cut(s)	734, 940
HpySE526I	ACGT	1 cut(s)	1054
Hsp92II	CATG	2 cut(s)	215, 665
HspAI	GCGC	2 cut(s)	159, 1086
KflI	GGGWCCC	1 cut(s)	333
Ksp22I	TGATCA	1 cut(s)	651
Kzo9I	GATC	2 cut(s)	220, 651
LmnI	GCTCC	4 cut(s)	311, 778, 864, 872
Lsp1109I	GCAGC	4 cut(s)	127, 148, 487, 1100
LweI	GCATC	4 cut(s)	358, 487, 525, 1061
MaeI	CTAG	1 cut(s)	576
MaeII	ACGT	1 cut(s)	1054
MaeIII	GTNAC	2 cut(s)	227, 468
MalI	GATC	2 cut(s)	222, 653
MboI	GATC	2 cut(s)	220, 651
MboII	GAAGA	4 cut(s)	72, 159, 449, 727
MfeI	CAATTG	2 cut(s)	339, 980
MhlI	GDGCHC	1 cut(s)	869
MluCI	AATT	8 cut(s)	110, 147, 272, 339, 687, 782, 883, 980
MlyI	GAGTC	2 cut(s)	680, 739
MmeI	TCCRAC	1 cut(s)	612
MseI	TTAA	4 cut(s)	56, 62, 390, 888
MslI	CAYNNNNRTG	2 cut(s)	210, 1069
MspCI	CTTAAG	1 cut(s)	61
MspI	CCGG	1 cut(s)	291
MunI	CAATTG	2 cut(s)	339, 980
MvnI	CGCG	1 cut(s)	508
MwoI	GCNNNNNNNGC	3 cut(s)	231, 500, 976
NdeII	GATC	2 cut(s)	220, 651
NlaIII	CATG	2 cut(s)	215, 665
NlaIV	GGNNCC	2 cut(s)	334, 335
PagI	TCATGA	2 cut(s)	211, 661
PfeI	GAWTC	2 cut(s)	697, 806
PkrI	GCNGC	4 cut(s)	142, 163, 502, 1090
PleI	GAGTC	2 cut(s)	679, 738
PpsI	GAGTC	2 cut(s)	679, 738
PpuMI	RGGWCCY	1 cut(s)	333
PsiI	TTATAA	1 cut(s)	1117
Psp124BI	GAGCTC	1 cut(s)	869
Psp5II	RGGWCCY	1 cut(s)	333
PspN4I	GGNNCC	2 cut(s)	334, 335
PspPI	GGNCC	3 cut(s)	267, 333, 761
PspPPI	RGGWCCY	1 cut(s)	333
RsaI	GTAC	2 cut(s)	512, 856
RsaNI	GTAC	2 cut(s)	511, 855
RseI	CAYNNNNRTG	2 cut(s)	210, 1069
SacI	GAGCTC	1 cut(s)	869
SaqAI	TTAA	4 cut(s)	56, 62, 390, 888
SatI	GCNGC	4 cut(s)	141, 162, 501, 1089
Sau3AI	GATC	2 cut(s)	220, 651
Sau96I	GGNCC	3 cut(s)	267, 333, 761
SchI	GAGTC	2 cut(s)	680, 739
SduI	GDGCHC	1 cut(s)	869
SfaNI	GCATC	4 cut(s)	358, 487, 525, 1061
SinI	GGWCC	2 cut(s)	267, 333
SmiMI	CAYNNNNRTG	2 cut(s)	210, 1069
SmlI	CTYRAG	3 cut(s)	61, 521, 1081
SmoI	CTYRAG	3 cut(s)	61, 521, 1081
Sse9I	AATT	8 cut(s)	110, 147, 272, 339, 687, 782, 883, 980
SsiI	CCGC	3 cut(s)	508, 727, 862
SspMI	CTAG	1 cut(s)	576
SstI	GAGCTC	1 cut(s)	869
TaaI	ACNGT	4 cut(s)	38, 481, 753, 929
TaiI	ACGT	1 cut(s)	1057
TaqI	TCGA	1 cut(s)	399
TasI	AATT	8 cut(s)	110, 147, 272, 339, 687, 782, 883, 980
TfiI	GAWTC	2 cut(s)	697, 806
Tru1I	TTAA	4 cut(s)	56, 62, 390, 888
Tru9I	TTAA	4 cut(s)	56, 62, 390, 888
TscAI	CASTG	6 cut(s)	142, 486, 609, 758, 877, 934
TseI	GCWGC	4 cut(s)	140, 161, 500, 1088
TspDTI	ATGAA	7 cut(s)	17, 24, 200, 635, 728, 966, 1062
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	6 cut(s)	142, 486, 609, 758, 877, 934
Vha464I	CTTAAG	1 cut(s)	61
VpaK11BI	GGWCC	2 cut(s)	267, 333
XagI	CCTNNNNNAGG	1 cut(s)	212
XapI	RAATTY	1 cut(s)	272
XspI	CTAG	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.