Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Reverse (-)

27132821 .. 27135509

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1140800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGATAAAAGCAGAGAGACGGACAGCCACCACAATCCACCCCATATTTATGAAAAAACCAACTCACATGGCATTGGCTCTAAACAGCATAATCCCCCACACCACAGCTTTAAGCCTACGCACTTCTCTGCCCTCTTCCAAAATGCCCTCCAGCCCCCAATTCCAACAGCCTCACAACCGCCGCCAGAGCGGTCAGATTGTCCGGAGCGCCGCCTCTTCCTCCTCCAACACCGCCGTCTCAGATGTTAAGCTGCAGCTCCAGGAGAAGGACCACAGCAATGGCTTCAACCCCACTTCCACGTTTGCTCCTGCGTGGTCCGAATTTGCCAGAAATGTGTCCGGTGAATGGGATGGCCATGGAGCGGACTTCACAAAGGAAGGGTATCCGATAGAACTTCCCGAGAATGTAGTGCCTGAAGCTTACAGGGAGTGGGAGGTTAAGGTTTTCGATTGGCAGACTCAATGCCCCACTCTTGCTAACCCAGATGAGCACATTCTTTTATACAAGAATATAGAGCTACTTCCTACTGTTGGATGTGAAGCTGATGCTGCTACTCGATATAGAGTCATTGAGAAGAATGTTGGTGGTCTGAGTAACGAAGTTTTTGCCTTTGCATATCAGTCTAGCGGATGTTATGTGTCTGTCTTGCCAATTCAGGATAAGGGTACGTATAAGTTACAGGAGTTGGAGTATTGCTTGATCAATCCTCAAGATAAAGAGTCTCGGGTGAGAATAATTCAGGTCATCCGCATAGAGAATGAGAAGATGATGCTGCAGAATATTAGAGTTCACTGTGAGAATTGGTATGGGCCATTCAGAAATGGGGATCAGTTAGGTGGATGTGCTATCCGTGATTCTGCTTTTGCTTGTACGGCTGCACTGGAAGCTTCAGAAGTTGTTGGAACTTGGCGGGGTCTCAGTGCTGTTGCCAATTTCCGTGGCACTCAAAATAATGTTTTTCAAGAACTTTTAGTCAACAGTGAGCAGAGCTCCATGAGAGATGAAAGTGGTCTCGTATTGCTTCCCAAGCGGCTGTGGTGTTCCGTAAAAGAAAGTAAAGATGGTGATACTTGCAGCGAGGTAGGATGGCTGTTAGATCATGGACGAGCTATCACATCAAGATGCACCTTCTCAAGCACAGCAACGCCACAGGAAATCTCAGTAGTGAATGAAACTGCAGTTTTGAAGGGCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

399

Amino Acids

44.31

Weight (kDa)

6.04

Isoelectric Point (pI)

51.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	189, 362
AccIII	TCCGGA	1 cut(s)	201
AclWI	GGATC	1 cut(s)	834
AcoI	YGGCCR	1 cut(s)	352
AcsI	RAATTY	1 cut(s)	320
AcuI	CTGAAG	2 cut(s)	435, 873
AfaI	GTAC	2 cut(s)	667, 871
AfiI	CCNNNNNNNGG	4 cut(s)	265, 345, 361, 530
AgsI	TTSAA	3 cut(s)	286, 962, 1186
AjnI	CCWGG	1 cut(s)	258
AluBI	AGCT	9 cut(s)	107, 250, 256, 419, 517, 542, 887, 990, 1109
AluI	AGCT	9 cut(s)	107, 250, 256, 419, 517, 542, 887, 990, 1109
Alw21I	GWGCWC	2 cut(s)	492, 992
Alw26I	GTCTC	5 cut(s)	10, 241, 726, 920, 1016
AlwI	GGATC	1 cut(s)	834
Ama87I	CYCGRG	2 cut(s)	398, 723
Aor13HI	TCCGGA	1 cut(s)	201
AoxI	GGCC	2 cut(s)	352, 809
ApeKI	GCWGC	6 cut(s)	250, 253, 548, 772, 875, 1074
ApoI	RAATTY	1 cut(s)	320
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	3 cut(s)	268, 315, 809
AsuHPI	GGTGA	3 cut(s)	353, 739, 1076
AvaI	CYCGRG	2 cut(s)	398, 723
AvaII	GGWCC	2 cut(s)	268, 315
BaeGI	GKGCMC	1 cut(s)	1193
BalI	TGGCCA	1 cut(s)	354
BanII	GRGCYC	1 cut(s)	992
Bbv12I	GWGCWC	2 cut(s)	492, 992
BbvI	GCAGC	6 cut(s)	237, 265, 535, 759, 862, 1086
BccI	CCATC	3 cut(s)	344, 1055, 1080
BceAI	ACGGC	2 cut(s)	218, 888
BcgI	CGANNNNNNTGC	2 cut(s)	587, 621
BciT130I	CCWGG	1 cut(s)	260
BciVI	GTATCC	1 cut(s)	393
BclI	TGATCA	1 cut(s)	699
BcoDI	GTCTC	5 cut(s)	10, 241, 726, 920, 1016
BfaI	CTAG	1 cut(s)	624
BfmI	CTRYAG	3 cut(s)	251, 773, 1176
BfoI	RGCGCY	1 cut(s)	210
BfuI	GTATCC	1 cut(s)	393
BisI	GCNGC	9 cut(s)	181, 210, 251, 254, 549, 773, 876, 1031, 1075
BlsI	GCNGC	9 cut(s)	182, 211, 252, 255, 550, 774, 877, 1032, 1076
Bme1390I	CCNGG	1 cut(s)	260
Bme18I	GGWCC	2 cut(s)	268, 315
BmeT110I	CYCGRG	2 cut(s)	398, 723
BmgT120I	GGNCC	3 cut(s)	268, 315, 809
BmrFI	CCNGG	1 cut(s)	260
BmsI	GCATC	3 cut(s)	535, 759, 1112
BplI	GAGNNNNNCTC	2 cut(s)	974, 1006
BpmI	CTGGAG	2 cut(s)	133, 242
BpuEI	CTTGAG	2 cut(s)	693, 1117
BsaAI	YACGTR	1 cut(s)	669
BsaI	GGTCTC	2 cut(s)	920, 1016
BsaJI	CCNNGG	2 cut(s)	355, 937
BsaWI	WCCGGW	2 cut(s)	201, 338
BsaXI	ACNNNNNCTCC	4 cut(s)	289, 319, 674, 704
Bsc4I	CCNNNNNNNGG	4 cut(s)	265, 345, 361, 530
Bse1I	ACTGG	1 cut(s)	885
Bse3DI	GCAATG	1 cut(s)	283
BseAI	TCCGGA	1 cut(s)	201
BseBI	CCWGG	1 cut(s)	260
BseDI	CCNNGG	2 cut(s)	355, 937
BseGI	GGATG	6 cut(s)	355, 539, 635, 744, 845, 1091
BseLI	CCNNNNNNNGG	4 cut(s)	265, 345, 361, 530
BseMI	GCAATG	1 cut(s)	283
BseMII	CTCAG	4 cut(s)	252, 581, 931, 1173
BseNI	ACTGG	1 cut(s)	885
BseRI	GAGGAG	1 cut(s)	211
BseSI	GKGCMC	1 cut(s)	1193
BseXI	GCAGC	6 cut(s)	237, 265, 535, 759, 862, 1086
BsgI	GTGCAG	1 cut(s)	861
BshFI	GGCC	2 cut(s)	354, 811
BsiHKAI	GWGCWC	2 cut(s)	492, 992
BsiHKCI	CYCGRG	2 cut(s)	398, 723
BsiSI	CCGG	2 cut(s)	202, 339
BslI	CCNNNNNNNGG	4 cut(s)	265, 345, 361, 530
BsmAI	GTCTC	5 cut(s)	10, 241, 726, 920, 1016
BsmBI	CGTCTC	2 cut(s)	10, 241
BsnI	GGCC	2 cut(s)	354, 811
Bso31I	GGTCTC	2 cut(s)	920, 1016
BsoBI	CYCGRG	2 cut(s)	398, 723
Bsp1286I	GDGCHC	3 cut(s)	492, 992, 1193
Bsp13I	TCCGGA	1 cut(s)	201
Bsp143I	GATC	3 cut(s)	699, 826, 1096
Bsp19I	CCATGG	1 cut(s)	355
BspANI	GGCC	2 cut(s)	354, 811
BspCNI	CTCAG	4 cut(s)	251, 582, 930, 1172
BspEI	TCCGGA	1 cut(s)	201
BspMAI	CTGCAG	3 cut(s)	255, 777, 1180
BspPI	GGATC	1 cut(s)	834
BspTNI	GGTCTC	2 cut(s)	920, 1016
BsrBI	CCGCTC	2 cut(s)	189, 362
BsrDI	GCAATG	1 cut(s)	283
BsrI	ACTGG	1 cut(s)	885
BssECI	CCNNGG	2 cut(s)	355, 937
BssMI	GATC	3 cut(s)	699, 826, 1096
BssT1I	CCWWGG	1 cut(s)	355
Bst2UI	CCWGG	1 cut(s)	260
Bst4CI	ACNGT	3 cut(s)	529, 794, 980
Bst6I	CTCTTC	2 cut(s)	139, 220
BstBAI	YACGTR	1 cut(s)	669
BstDEI	CTNAG	4 cut(s)	238, 590, 917, 1159
BstDSI	CCRYGG	2 cut(s)	355, 937
BstF5I	GGATG	6 cut(s)	355, 539, 635, 744, 845, 1091
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	3 cut(s)	702, 829, 1099
BstMAI	GTCTC	5 cut(s)	10, 241, 726, 920, 1016
BstMBI	GATC	3 cut(s)	699, 826, 1096
BstMWI	GCNNNNNNNGC	5 cut(s)	186, 548, 872, 884, 1027
BstNI	CCWGG	1 cut(s)	260
BstSCI	CCNGG	1 cut(s)	258
BstSFI	CTRYAG	3 cut(s)	251, 773, 1176
BstSLI	GKGCMC	1 cut(s)	1193
BstSNI	TACGTA	1 cut(s)	669
BstV1I	GCAGC	6 cut(s)	237, 265, 535, 759, 862, 1086
BstXI	CCANNNNNNTGG	1 cut(s)	278
BsuI	GTATCC	1 cut(s)	393
BsuRI	GGCC	2 cut(s)	354, 811
BtgI	CCRYGG	2 cut(s)	355, 937
BtsCI	GGATG	6 cut(s)	355, 539, 635, 744, 845, 1091
BtsIMutI	CAGTG	4 cut(s)	790, 878, 925, 985
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	3 cut(s)	268, 315, 809
Csp6I	GTAC	2 cut(s)	666, 870
CspCI	CAANNNNNGTGG	2 cut(s)	919, 954
CviAII	CATG	4 cut(s)	67, 356, 994, 1100
CviQI	GTAC	2 cut(s)	666, 870
DdeI	CTNAG	4 cut(s)	238, 590, 917, 1159
DpnI	GATC	3 cut(s)	701, 828, 1098
DpnII	GATC	3 cut(s)	699, 826, 1096
EaeI	YGGCCR	1 cut(s)	352
Eam1104I	CTCTTC	2 cut(s)	139, 220
EarI	CTCTTC	2 cut(s)	139, 220
Ecl136II	GAGCTC	1 cut(s)	990
Eco105I	TACGTA	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	355
Eco24I	GRGCYC	1 cut(s)	992
Eco31I	GGTCTC	2 cut(s)	920, 1016
Eco47I	GGWCC	2 cut(s)	268, 315
Eco53kI	GAGCTC	1 cut(s)	990
Eco57I	CTGAAG	2 cut(s)	435, 873
Eco88I	CYCGRG	2 cut(s)	398, 723
EcoICRI	GAGCTC	1 cut(s)	990
EcoRII	CCWGG	1 cut(s)	258
EcoT14I	CCWWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	992
ErhI	CCWWGG	1 cut(s)	355
Esp3I	CGTCTC	2 cut(s)	10, 241
FaeI	CATG	4 cut(s)	70, 359, 997, 1103
FatI	CATG	4 cut(s)	66, 355, 993, 1099
FauI	CCCGC	1 cut(s)	903
FbaI	TGATCA	1 cut(s)	699
Fnu4HI	GCNGC	9 cut(s)	181, 210, 251, 254, 549, 773, 876, 1031, 1075
FokI	GGATG	6 cut(s)	362, 546, 642, 731, 852, 1098
FriOI	GRGCYC	1 cut(s)	992
Fsp4HI	GCNGC	9 cut(s)	181, 210, 251, 254, 549, 773, 876, 1031, 1075
FspBI	CTAG	1 cut(s)	624
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	9 cut(s)	181, 210, 251, 254, 549, 773, 876, 1031, 1075
GsuI	CTGGAG	2 cut(s)	133, 242
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	2 cut(s)	354, 811
HapII	CCGG	2 cut(s)	202, 339
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	4 cut(s)	70, 359, 997, 1103
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	976
HindII	GTYRAC	1 cut(s)	976
HindIII	AAGCTT	2 cut(s)	417, 885
HinfI	GANTC	4 cut(s)	457, 564, 719, 854
HpaII	CCGG	2 cut(s)	202, 339
HphI	GGTGA	3 cut(s)	353, 739, 1076
Hpy166II	GTNNAC	2 cut(s)	790, 976
Hpy188I	TCNGA	7 cut(s)	195, 241, 319, 387, 591, 818, 892
Hpy188III	TCNNGA	6 cut(s)	202, 398, 656, 710, 962, 1119
Hpy8I	GTNNAC	2 cut(s)	790, 976
HpyAV	CCTTC	4 cut(s)	259, 371, 1138, 1180
HpyCH4III	ACNGT	3 cut(s)	529, 794, 980
HpyCH4IV	ACGT	2 cut(s)	299, 668
HpyCH4V	TGCA	7 cut(s)	253, 614, 775, 878, 1074, 1125, 1178
HpyF10VI	GCNNNNNNNGC	5 cut(s)	186, 548, 872, 884, 1027
HpyF3I	CTNAG	4 cut(s)	238, 590, 917, 1159
HpySE526I	ACGT	2 cut(s)	299, 668
Hsp92II	CATG	4 cut(s)	70, 359, 997, 1103
HspAI	GCGC	1 cut(s)	207
Kpn2I	TCCGGA	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	699
Kzo9I	GATC	3 cut(s)	699, 826, 1096
LmnI	GCTCC	5 cut(s)	204, 261, 310, 359, 995
Lsp1109I	GCAGC	6 cut(s)	237, 265, 535, 759, 862, 1086
LweI	GCATC	3 cut(s)	535, 759, 1112
MaeI	CTAG	1 cut(s)	624
MaeII	ACGT	2 cut(s)	299, 668
MaeIII	GTNAC	2 cut(s)	593, 675
MalI	GATC	3 cut(s)	701, 828, 1098
MbiI	CCGCTC	2 cut(s)	189, 362
MboI	GATC	3 cut(s)	699, 826, 1096
MboII	GAAGA	4 cut(s)	126, 207, 586, 775
MhlI	GDGCHC	3 cut(s)	492, 992, 1193
MlsI	TGGCCA	1 cut(s)	354
MluCI	AATT	6 cut(s)	158, 320, 651, 735, 799, 931
MluNI	TGGCCA	1 cut(s)	354
MlyI	GAGTC	3 cut(s)	451, 573, 728
MmeI	TCCRAC	5 cut(s)	187, 249, 511, 666, 880
MnlI	CCTC	9 cut(s)	142, 157, 180, 223, 229, 232, 427, 717, 1072
Mox20I	TGGCCA	1 cut(s)	354
MroI	TCCGGA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	354
MseI	TTAA	3 cut(s)	110, 246, 438
MslI	CAYNNNNRTG	3 cut(s)	47, 276, 1120
Msp20I	TGGCCA	1 cut(s)	354
MspI	CCGG	2 cut(s)	202, 339
MspR9I	CCNGG	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	260
MwoI	GCNNNNNNNGC	5 cut(s)	186, 548, 872, 884, 1027
NcoI	CCATGG	1 cut(s)	355
NdeII	GATC	3 cut(s)	699, 826, 1096
NlaIII	CATG	4 cut(s)	70, 359, 997, 1103
PfeI	GAWTC	1 cut(s)	854
PfoI	TCCNGGA	1 cut(s)	258
PkrI	GCNGC	9 cut(s)	182, 211, 252, 255, 550, 774, 877, 1032, 1076
PleI	GAGTC	3 cut(s)	451, 572, 727
PpsI	GAGTC	3 cut(s)	451, 572, 727
Ppu21I	YACGTR	1 cut(s)	669
Psp124BI	GAGCTC	1 cut(s)	992
Psp6I	CCWGG	1 cut(s)	258
PspGI	CCWGG	1 cut(s)	258
PspPI	GGNCC	3 cut(s)	268, 315, 809
PstI	CTGCAG	3 cut(s)	255, 777, 1180
RsaI	GTAC	2 cut(s)	667, 871
RsaNI	GTAC	2 cut(s)	666, 870
RseI	CAYNNNNRTG	3 cut(s)	47, 276, 1120
SacI	GAGCTC	1 cut(s)	992
SaqAI	TTAA	3 cut(s)	110, 246, 438
SatI	GCNGC	9 cut(s)	181, 210, 251, 254, 549, 773, 876, 1031, 1075
Sau3AI	GATC	3 cut(s)	699, 826, 1096
Sau96I	GGNCC	3 cut(s)	268, 315, 809
SchI	GAGTC	3 cut(s)	451, 573, 728
ScrFI	CCNGG	1 cut(s)	260
SduI	GDGCHC	3 cut(s)	492, 992, 1193
SfaNI	GCATC	3 cut(s)	535, 759, 1112
SfcI	CTRYAG	3 cut(s)	251, 773, 1176
SinI	GGWCC	2 cut(s)	268, 315
SmiMI	CAYNNNNRTG	3 cut(s)	47, 276, 1120
SmlI	CTYRAG	2 cut(s)	708, 1132
SmoI	CTYRAG	2 cut(s)	708, 1132
SnaBI	TACGTA	1 cut(s)	669
Sse9I	AATT	6 cut(s)	158, 320, 651, 735, 799, 931
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	1 cut(s)	624
SstI	GAGCTC	1 cut(s)	992
StyD4I	CCNGG	1 cut(s)	258
StyI	CCWWGG	1 cut(s)	355
TaaI	ACNGT	3 cut(s)	529, 794, 980
TaiI	ACGT	2 cut(s)	302, 671
TaqI	TCGA	2 cut(s)	447, 556
TasI	AATT	6 cut(s)	158, 320, 651, 735, 799, 931
TauI	GCSGC	3 cut(s)	183, 212, 1033
TfiI	GAWTC	1 cut(s)	854
Tru1I	TTAA	3 cut(s)	110, 246, 438
Tru9I	TTAA	3 cut(s)	110, 246, 438
TscAI	CASTG	4 cut(s)	797, 885, 925, 985
TseI	GCWGC	6 cut(s)	250, 253, 548, 772, 875, 1074
TspDTI	ATGAA	3 cut(s)	65, 1017, 1185
TspGWI	ACGGA	4 cut(s)	34, 839, 926, 1033
TspRI	CASTG	4 cut(s)	797, 885, 925, 985
VpaK11BI	GGWCC	2 cut(s)	268, 315
XapI	RAATTY	1 cut(s)	320
XspI	CTAG	1 cut(s)	624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.