Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003926

Physical Location & Seq

Genomic Coordinates Forward (+)

54978336 .. 54988804

Gene Structure 10469 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG318400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAGCAATCATTGCGCCACAATTTGGGGACCAAAAATGGGACGATGAGGCTGTCCGAGTCCTATCGAAAGCCTTTCCATACCATGAAAAATGTGCTCGGTGAATGGGATGGCTATGGAGCAGACTTCACAACCGAAGGGAACCCGATTGAACTCCTAGAAAGGGTTGTGCCTGATGCTTACAGGGAGTGGGAGGTTAAGGTTTTCCACTGGCAGACTCAATGTCCCACTCTTGCTGACCCAGAAGACCAAGTTCTTGCCTACAAGACGATAGAGCTACTTCCCACAGTTGGATGTGAAGCCGATGCTGCTACACGGTATAGCATTCTTGAGAGGAATGTGGGTGTTGTGAACAACAAAGTTTCTGCCTTTGCGTATCAATCTAGTGGATGTTATGTGTATGTTTTGCCAGTGGAGGATAAGAGTTTGAATAAGTTGTTGGAAGTAGAGTATTGCTTGATCAATCCTCAAGATAAGGAGTCTCGTGTGAGGCGCATAGACAATATGAAGATGGTATTGCAGAGTCTTAGAGTTCTTTGTGAACAGTGGTATGGGCCATTCAGAAATGGGGAGCAATTAGGTGGATGTGTCATCCATGATTCTGCTTTTTCTTCTACTCCCGCATTGGAAGCTTTAAAAGTTGTTGGTACTTGGCGGAGCTCCAGTGCTGTTGCCACTTTTAATGGTTCTCAAAATGTAGAATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

235

Amino Acids

26.55

Weight (kDa)

5.34

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003926)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G38225 AT4G38225 AT4G38225
fragaria_vesca	FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900 FvH4_2g16900
malus_domestica	MD05G1140400.v1.1 MD05G1140800.v1.1 MD10G1142400.v1.1
prunus_persica	Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1 Prupe.8G180900_v2.0.a1
pyrus_communis	pycom05g13590 pycom10g12210
rosa_chinensis	RchiOBHm_Chr6g0281021
rosa_laevigata	RLG00000009220 RLG00000013005
rosa_multiflora	Rmu_sc0000870.1_g000027 Rmu_sc0001021.1_g000001 Rmu_sc0002082.1_g000049 Rmu_sc0012869.1_g000003
rosa_roxburghii	Rroxscaffold_7G00187380
rosa_rugosa	Rorug06G0138200
rosa_samantha	Rh4AG124500 Rh4BG143500 Rh6AG250200 Rh6BG252500 Rh6BG318400 Rh6CG252900 Rh6DG244600
rosa_wichuraiana	Rw6G021640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	2 cut(s)	621, 655
AfaI	GTAC	1 cut(s)	649
AfiI	CCNNNNNNNGG	4 cut(s)	25, 39, 163, 290
AgsI	TTSAA	2 cut(s)	152, 430
AhdI	GACNNNNNGTC	1 cut(s)	222
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	3 cut(s)	277, 632, 660
AluI	AGCT	3 cut(s)	277, 632, 660
Alw21I	GWGCWC	2 cut(s)	99, 662
Alw26I	GTCTC	1 cut(s)	486
AoxI	GGCC	1 cut(s)	554
ApeKI	GCWGC	1 cut(s)	308
AspLEI	GCGC	2 cut(s)	18, 495
AspS9I	GGNCC	2 cut(s)	30, 554
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	30
BanII	GRGCYC	1 cut(s)	662
BauI	CACGAG	1 cut(s)	483
BbsI	GAAGAC	1 cut(s)	252
Bbv12I	GWGCWC	2 cut(s)	99, 662
BbvI	GCAGC	1 cut(s)	295
BccI	CCATC	2 cut(s)	104, 505
BclI	TGATCA	1 cut(s)	459
BcoDI	GTCTC	1 cut(s)	486
BfaI	CTAG	2 cut(s)	158, 384
BisI	GCNGC	1 cut(s)	309
BlsI	GCNGC	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	30
BmeRI	GACNNNNNGTC	1 cut(s)	222
BmgT120I	GGNCC	2 cut(s)	30, 554
BmiI	GGNNCC	2 cut(s)	31, 143
BmsI	GCATC	2 cut(s)	166, 295
BpiI	GAAGAC	1 cut(s)	252
BpmI	CTGGAG	1 cut(s)	646
BpuEI	CTTGAG	2 cut(s)	350, 453
BsaXI	ACNNNNNCTCC	2 cut(s)	649, 679
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 39, 163, 290
Bse1I	ACTGG	3 cut(s)	215, 410, 663
Bse3DI	GCAATG	1 cut(s)	11
BseGI	GGATG	5 cut(s)	115, 299, 395, 590, 591
BseLI	CCNNNNNNNGG	4 cut(s)	25, 39, 163, 290
BseMI	GCAATG	1 cut(s)	11
BseNI	ACTGG	3 cut(s)	215, 410, 663
BseXI	GCAGC	1 cut(s)	295
BshFI	GGCC	1 cut(s)	556
BsiHKAI	GWGCWC	2 cut(s)	99, 662
BslFI	GGGAC	3 cut(s)	43, 55, 210
BslI	CCNNNNNNNGG	4 cut(s)	25, 39, 163, 290
BsmAI	GTCTC	1 cut(s)	486
BsmFI	GGGAC	3 cut(s)	43, 55, 210
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	556
Bsp1286I	GDGCHC	2 cut(s)	99, 662
Bsp143I	GATC	1 cut(s)	459
BspACI	CCGC	2 cut(s)	621, 655
BspANI	GGCC	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	31, 143
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	3 cut(s)	215, 410, 663
BssMI	GATC	1 cut(s)	459
BssSI	CACGAG	1 cut(s)	483
Bst2BI	CACGAG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	289, 318, 546
BstAPI	GCANNNNNTGC	1 cut(s)	13
BstDEI	CTNAG	1 cut(s)	527
BstF5I	GGATG	5 cut(s)	115, 299, 395, 590, 591
BstHHI	GCGC	2 cut(s)	18, 495
BstKTI	GATC	1 cut(s)	462
BstMAI	GTCTC	1 cut(s)	486
BstMBI	GATC	1 cut(s)	459
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 308, 629
BstV1I	GCAGC	1 cut(s)	295
BstV2I	GAAGAC	1 cut(s)	252
BsuRI	GGCC	1 cut(s)	556
BtsCI	GGATG	5 cut(s)	115, 299, 395, 590, 591
BtsIMutI	CAGTG	4 cut(s)	208, 417, 551, 670
CfoI	GCGC	2 cut(s)	18, 495
Cfr13I	GGNCC	2 cut(s)	30, 554
Csp6I	GTAC	1 cut(s)	648
CviAII	CATG	2 cut(s)	85, 596
CviJI	RGCY	8 cut(s)	52, 73, 114, 277, 302, 556, 632, 660
CviKI_1	RGCY	8 cut(s)	52, 73, 114, 277, 302, 556, 632, 660
CviQI	GTAC	1 cut(s)	648
DdeI	CTNAG	1 cut(s)	527
DpnI	GATC	1 cut(s)	461
DpnII	GATC	1 cut(s)	459
DraI	TTTAAA	1 cut(s)	636
DriI	GACNNNNNGTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	670
Ecl136II	GAGCTC	1 cut(s)	660
Eco24I	GRGCYC	1 cut(s)	662
Eco47I	GGWCC	1 cut(s)	30
Eco53kI	GAGCTC	1 cut(s)	660
EcoICRI	GAGCTC	1 cut(s)	660
EcoT38I	GRGCYC	1 cut(s)	662
FaeI	CATG	2 cut(s)	88, 599
FaqI	GGGAC	3 cut(s)	43, 55, 210
FatI	CATG	2 cut(s)	84, 595
FauI	CCCGC	1 cut(s)	628
FbaI	TGATCA	1 cut(s)	459
Fnu4HI	GCNGC	1 cut(s)	309
FokI	GGATG	5 cut(s)	122, 306, 402, 578, 597
FriOI	GRGCYC	1 cut(s)	662
Fsp4HI	GCNGC	1 cut(s)	309
FspBI	CTAG	2 cut(s)	158, 384
GlaI	GCGC	2 cut(s)	17, 494
GluI	GCNGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	646
HaeIII	GGCC	1 cut(s)	556
HhaI	GCGC	2 cut(s)	18, 495
Hin1II	CATG	2 cut(s)	88, 599
Hin6I	GCGC	2 cut(s)	16, 493
HinP1I	GCGC	2 cut(s)	16, 493
HindIII	AAGCTT	1 cut(s)	630
HinfI	GANTC	5 cut(s)	59, 217, 479, 523, 599
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	352, 542
Hpy188I	TCNGA	2 cut(s)	58, 563
Hpy188III	TCNNGA	2 cut(s)	329, 470
Hpy8I	GTNNAC	2 cut(s)	352, 542
HpyAV	CCTTC	1 cut(s)	131
HpyCH4III	ACNGT	3 cut(s)	289, 318, 546
HpyCH4V	TGCA	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 308, 629
HpyF3I	CTNAG	1 cut(s)	527
Hsp92II	CATG	2 cut(s)	88, 599
HspAI	GCGC	2 cut(s)	16, 493
Ksp22I	TGATCA	1 cut(s)	459
Kzo9I	GATC	1 cut(s)	459
LmnI	GCTCC	5 cut(s)	4, 119, 571, 657, 665
LpnPI	CCDG	6 cut(s)	169, 186, 196, 255, 423, 676
Lsp1109I	GCAGC	1 cut(s)	295
LweI	GCATC	2 cut(s)	166, 295
MaeI	CTAG	2 cut(s)	158, 384
MalI	GATC	1 cut(s)	461
MboI	GATC	1 cut(s)	459
MboII	GAAGA	3 cut(s)	257, 520, 603
MhlI	GDGCHC	2 cut(s)	99, 662
MluCI	AATT	3 cut(s)	22, 575, 701
MlyI	GAGTC	4 cut(s)	68, 211, 488, 532
MmeI	TCCRAC	2 cut(s)	271, 420
MnlI	CCTC	6 cut(s)	42, 187, 327, 409, 477, 483
MseI	TTAA	3 cut(s)	198, 635, 681
Mva1269I	GAATGC	1 cut(s)	324
MwoI	GCNNNNNNNGC	3 cut(s)	13, 308, 629
NdeII	GATC	1 cut(s)	459
NlaIII	CATG	2 cut(s)	88, 599
NlaIV	GGNNCC	2 cut(s)	31, 143
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	599
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	1 cut(s)	310
PleI	GAGTC	4 cut(s)	67, 211, 487, 531
PpsI	GAGTC	4 cut(s)	67, 211, 487, 531
Psp124BI	GAGCTC	1 cut(s)	662
PspN4I	GGNNCC	2 cut(s)	31, 143
PspPI	GGNCC	2 cut(s)	30, 554
RsaI	GTAC	1 cut(s)	649
RsaNI	GTAC	1 cut(s)	648
SacI	GAGCTC	1 cut(s)	662
SaqAI	TTAA	3 cut(s)	198, 635, 681
SatI	GCNGC	1 cut(s)	309
Sau3AI	GATC	1 cut(s)	459
Sau96I	GGNCC	2 cut(s)	30, 554
SchI	GAGTC	4 cut(s)	68, 211, 488, 532
SduI	GDGCHC	2 cut(s)	99, 662
SetI	ASST	6 cut(s)	198, 204, 279, 583, 634, 662
SfaNI	GCATC	2 cut(s)	166, 295
SinI	GGWCC	1 cut(s)	30
SmlI	CTYRAG	2 cut(s)	329, 468
SmoI	CTYRAG	2 cut(s)	329, 468
Sse9I	AATT	3 cut(s)	22, 575, 701
SsiI	CCGC	2 cut(s)	621, 655
SspMI	CTAG	2 cut(s)	158, 384
SstI	GAGCTC	1 cut(s)	662
TaaI	ACNGT	3 cut(s)	289, 318, 546
TaqI	TCGA	1 cut(s)	67
TasI	AATT	3 cut(s)	22, 575, 701
TfiI	GAWTC	1 cut(s)	599
Tru1I	TTAA	3 cut(s)	198, 635, 681
Tru9I	TTAA	3 cut(s)	198, 635, 681
TscAI	CASTG	4 cut(s)	215, 417, 551, 670
TseI	GCWGC	1 cut(s)	308
TspDTI	ATGAA	2 cut(s)	101, 521
TspRI	CASTG	4 cut(s)	215, 417, 551, 670
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	30
XspI	CTAG	2 cut(s)	158, 384

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.