Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Forward (+)

18684505 .. 18685341

Gene Structure 837 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g22740.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGACAGGCTTGTTGCTGAAGGTGTTCTATCAAAAACTGGAGAAGACAGTTACACGAAGAAGAAGTCTGACCATGAATTCATCAAGGTGAAAAAAGAAATGGACTGTCAAGTAGTCCCAGATAGTGGAAAATCTCCAAACGCCAATGATCACTTGTACATGAAGGCACTGTATCATGTTCTCCCAATGCAGTATGTGTCAATCGCAAAGCTTCAGAACAAGCTTGGAGGAGAAGCAAATCAGAATACTGTGCCCAAGATGATTGATAAGATGGCACGAGAAGGTTTGGTTGAAACCATGGGAAATCGAAGGCTAGGAAAGCGTGTGCTCCATTCTGATATTACCAAGAAAAAGCTTCTTGAAGTCCAGAAAGCTTTGAACTATGATGGAATGGATGTGGACAACACTGAACCCCAAAGCAAGTCGAATCATCAAGGATTTTATCCAGTTGCTAGTAACTACCGAAACACATCCACATGCGGTGTGCTCCACTCCATTGGATCAGATCTGACACGAATGAAAATAAGGGCTGATTCAAATGAATGCAGTCCAACGAGGACTGAGCAGACTACATCAATGAGAAAAGAGCATGGAAACACCCCCACAAGCCGGGCTCATCCTCAAATTTCAAGAGAGAGTTTTGCACCTGACAAGCGTTCCAGGAAAACAAGCATGGTCAAGGAGCCTATTCTTCAGTACACAAAGCGCCAGAAACCTTCAGCCGTCCAACTAGACTTCACCAATAGATCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

251

Amino Acids

28.26

Weight (kDa)

9.59

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	125
AciI	CCGC	1 cut(s)	480
AclWI	GGATC	1 cut(s)	508
AcsI	RAATTY	2 cut(s)	77, 624
AcuI	CTGAAG	4 cut(s)	39, 197, 677, 702
AfaI	GTAC	2 cut(s)	158, 698
AfiI	CCNNNNNNNGG	2 cut(s)	125, 609
AgsI	TTSAA	5 cut(s)	293, 362, 379, 537, 630
AjnI	CCWGG	1 cut(s)	659
AluBI	AGCT	4 cut(s)	211, 223, 355, 374
AluI	AGCT	4 cut(s)	211, 223, 355, 374
Alw21I	GWGCWC	2 cut(s)	330, 489
AlwI	GGATC	1 cut(s)	508
ApoI	RAATTY	2 cut(s)	77, 624
ArsI	GACNNNNNNTTYG	2 cut(s)	50, 82
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	708
AsuC2I	CCSGG	1 cut(s)	611
AsuHPI	GGTGA	2 cut(s)	100, 730
BaeGI	GKGCMC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	616
BauI	CACGAG	1 cut(s)	276
BbsI	GAAGAC	1 cut(s)	51
Bbv12I	GWGCWC	2 cut(s)	330, 489
BccI	CCATC	2 cut(s)	265, 380
BceAI	ACGGC	1 cut(s)	707
BciT130I	CCWGG	1 cut(s)	661
BclI	TGATCA	1 cut(s)	148
BcnI	CCSGG	1 cut(s)	611
BfaI	CTAG	3 cut(s)	314, 453, 731
BfoI	RGCGCY	1 cut(s)	709
BglII	AGATCT	1 cut(s)	505
Bme1390I	CCNGG	2 cut(s)	611, 661
BmiI	GGNNCC	1 cut(s)	684
BmrFI	CCNGG	2 cut(s)	611, 661
BpiI	GAAGAC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	60
BpuMI	CCSGG	1 cut(s)	611
BsaJI	CCNNGG	1 cut(s)	297
Bsc4I	CCNNNNNNNGG	2 cut(s)	125, 609
Bse1I	ACTGG	2 cut(s)	43, 446
BseBI	CCWGG	1 cut(s)	661
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	3 cut(s)	400, 470, 616
BseLI	CCNNNNNNNGG	2 cut(s)	125, 609
BseMII	CTCAG	1 cut(s)	552
BseNI	ACTGG	2 cut(s)	43, 446
BseRI	GAGGAG	1 cut(s)	243
BseSI	GKGCMC	1 cut(s)	255
BsiHKAI	GWGCWC	2 cut(s)	330, 489
BsiSI	CCGG	1 cut(s)	610
BslFI	GGGAC	1 cut(s)	101
BslI	CCNNNNNNNGG	2 cut(s)	125, 609
BsmFI	GGGAC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	548
Bsp1286I	GDGCHC	4 cut(s)	255, 330, 489, 616
Bsp1407I	TGTACA	1 cut(s)	156
Bsp143I	GATC	4 cut(s)	148, 500, 505, 746
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	1 cut(s)	480
BspCNI	CTCAG	1 cut(s)	553
BspLI	GGNNCC	1 cut(s)	684
BspPI	GGATC	1 cut(s)	508
BsrGI	TGTACA	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	43, 446
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	4 cut(s)	148, 500, 505, 746
BssSI	CACGAG	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	297
Bst2BI	CACGAG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	661
Bst4CI	ACNGT	4 cut(s)	50, 107, 171, 250
BstAUI	TGTACA	1 cut(s)	156
BstDEI	CTNAG	1 cut(s)	561
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	3 cut(s)	400, 470, 616
BstH2I	RGCGCY	1 cut(s)	709
BstHHI	GCGC	1 cut(s)	708
BstKTI	GATC	4 cut(s)	151, 503, 508, 749
BstMBI	GATC	4 cut(s)	148, 500, 505, 746
BstMWI	GCNNNNNNNGC	1 cut(s)	319
BstNI	CCWGG	1 cut(s)	661
BstNSI	RCATGY	1 cut(s)	480
BstSCI	CCNGG	2 cut(s)	609, 659
BstSLI	GKGCMC	1 cut(s)	255
BstV2I	GAAGAC	1 cut(s)	51
BstX2I	RGATCY	1 cut(s)	505
BstXI	CCANNNNNNTGG	1 cut(s)	497
BstYI	RGATCY	1 cut(s)	505
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	400, 470, 616
BtsIMutI	CAGTG	2 cut(s)	167, 405
CfoI	GCGC	1 cut(s)	708
Csp6I	GTAC	2 cut(s)	157, 697
CviAII	CATG	7 cut(s)	74, 160, 176, 298, 477, 590, 673
CviQI	GTAC	2 cut(s)	157, 697
DdeI	CTNAG	1 cut(s)	561
DpnI	GATC	4 cut(s)	150, 502, 507, 748
DpnII	GATC	4 cut(s)	148, 500, 505, 746
Eco130I	CCWWGG	1 cut(s)	297
Eco24I	GRGCYC	1 cut(s)	616
Eco57I	CTGAAG	4 cut(s)	39, 197, 677, 702
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	659
EcoT14I	CCWWGG	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	616
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	7 cut(s)	77, 163, 179, 301, 480, 593, 676
FaqI	GGGAC	1 cut(s)	101
FatI	CATG	7 cut(s)	73, 159, 175, 297, 476, 589, 672
FbaI	TGATCA	1 cut(s)	148
FokI	GGATG	3 cut(s)	407, 457, 603
FriOI	GRGCYC	1 cut(s)	616
FspBI	CTAG	3 cut(s)	314, 453, 731
GlaI	GCGC	1 cut(s)	707
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	709
HapII	CCGG	1 cut(s)	610
HhaI	GCGC	1 cut(s)	708
Hin1II	CATG	7 cut(s)	77, 163, 179, 301, 480, 593, 676
Hin6I	GCGC	1 cut(s)	706
HinP1I	GCGC	1 cut(s)	706
HindIII	AAGCTT	4 cut(s)	209, 221, 353, 372
HinfI	GANTC	2 cut(s)	427, 533
HpaII	CCGG	1 cut(s)	610
HphI	GGTGA	2 cut(s)	100, 730
Hpy166II	GTNNAC	2 cut(s)	400, 699
Hpy188I	TCNGA	6 cut(s)	70, 216, 243, 337, 505, 510
Hpy188III	TCNNGA	3 cut(s)	359, 367, 630
Hpy8I	GTNNAC	2 cut(s)	400, 699
HpyAV	CCTTC	5 cut(s)	14, 157, 275, 303, 726
HpyCH4III	ACNGT	4 cut(s)	50, 107, 171, 250
HpyCH4V	TGCA	3 cut(s)	190, 546, 644
HpyF10VI	GCNNNNNNNGC	1 cut(s)	319
HpyF3I	CTNAG	1 cut(s)	561
Hsp92II	CATG	7 cut(s)	77, 163, 179, 301, 480, 593, 676
HspAI	GCGC	1 cut(s)	706
Ksp22I	TGATCA	1 cut(s)	148
Kzo9I	GATC	4 cut(s)	148, 500, 505, 746
LmnI	GCTCC	3 cut(s)	333, 492, 682
LpnPI	CCDG	9 cut(s)	24, 132, 380, 459, 623, 646, 660, 673, 722
MaeI	CTAG	3 cut(s)	314, 453, 731
MaeIII	GTNAC	2 cut(s)	50, 455
MalI	GATC	4 cut(s)	150, 502, 507, 748
MboI	GATC	4 cut(s)	148, 500, 505, 746
MboII	GAAGA	4 cut(s)	56, 70, 73, 683
MflI	RGATCY	1 cut(s)	505
MhlI	GDGCHC	4 cut(s)	255, 330, 489, 616
MluCI	AATT	2 cut(s)	77, 624
MmeI	TCCRAC	2 cut(s)	575, 751
MnlI	CCTC	3 cut(s)	221, 549, 630
MroXI	GAANNNNTTC	1 cut(s)	24
MslI	CAYNNNNRTG	2 cut(s)	86, 475
MspI	CCGG	1 cut(s)	610
MspR9I	CCNGG	2 cut(s)	611, 661
Mva1269I	GAATGC	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	661
MwoI	GCNNNNNNNGC	1 cut(s)	319
NciI	CCSGG	1 cut(s)	611
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	4 cut(s)	148, 500, 505, 746
NlaIII	CATG	7 cut(s)	77, 163, 179, 301, 480, 593, 676
NlaIV	GGNNCC	1 cut(s)	684
NspI	RCATGY	1 cut(s)	480
PctI	GAATGC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	2 cut(s)	427, 533
PflMI	CCANNNNNTGG	1 cut(s)	125
PfoI	TCCNGGA	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	659
PspGI	CCWGG	1 cut(s)	659
PspN4I	GGNNCC	1 cut(s)	684
PsuI	RGATCY	1 cut(s)	505
RsaI	GTAC	2 cut(s)	158, 698
RsaNI	GTAC	2 cut(s)	157, 697
RseI	CAYNNNNRTG	2 cut(s)	86, 475
Sau3AI	GATC	4 cut(s)	148, 500, 505, 746
ScrFI	CCNGG	2 cut(s)	611, 661
SduI	GDGCHC	4 cut(s)	255, 330, 489, 616
SetI	ASST	9 cut(s)	25, 90, 213, 225, 286, 357, 376, 649, 718
SmiMI	CAYNNNNRTG	2 cut(s)	86, 475
Sse9I	AATT	2 cut(s)	77, 624
SsiI	CCGC	1 cut(s)	480
SspMI	CTAG	3 cut(s)	314, 453, 731
StyD4I	CCNGG	2 cut(s)	609, 659
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	4 cut(s)	50, 107, 171, 250
TaqI	TCGA	2 cut(s)	307, 425
TasI	AATT	2 cut(s)	77, 624
TatI	WGTACW	2 cut(s)	156, 696
TfiI	GAWTC	2 cut(s)	427, 533
TscAI	CASTG	2 cut(s)	174, 412
TspDTI	ATGAA	5 cut(s)	70, 90, 176, 533, 555
TspRI	CASTG	2 cut(s)	174, 412
Van91I	CCANNNNNTGG	1 cut(s)	125
XapI	RAATTY	2 cut(s)	77, 624
XceI	RCATGY	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	3 cut(s)	314, 453, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.