RchiOBHm_Chr4g0430321

HORMA domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
54878873 .. 54882980
4108 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39904

Sequence Viewer

Length: 1578 bp
ATGATAGAGGAATACACATTTTCATTCAGTTACTCAAATTCCGAGAGCCAGGAGGTTTCAATGAATATCAGTCGCTCTGGAAACAAGAAGCATGGTGGAACATTCAAGTGTGACTCCACAGCAGAAATTACCCCCAACCAGATGAGAAGTTTTGCTTGTAAAATGGTCCGCACACTGGTTCAACTGATGAGAACTCTGGATAGGATGCCTGAAGAGCGCACCATACTGATGAAACTCCTATATTATGATGATGTGACGCCAGTAGATTATGAGCCTCCATTCTTCAGATGTTGCACAGAAGAAGAAACTCATAACCCATGGACAAAGAATCCTTTGAAAATGGAGGTCGGGAATGTGAACAGCAAGCATCTTGTCTTAGCTCTCAAGGTAAAGAGCGTGCTTGATCCCTGTGAGGATGAAAATGATGATACTCAAGATGATGAAGTGAGCTTAGGAGCTGACTCCATGCAAAGGGATGACTTTTCTGAAACTGACAGTGAGGTTAACCAATCACAAGAGGATCGATATATAGTTGCCCCCATAGCTAGGCGACAACCACAGGAGGATAATAGCATACCTCAGGAAGTTAACAGCATGGATGATGAAGCTACAGATGATACTCAGGATCCAGAGGAAGATGAACTGAAATTTTCTAGGATAAAGGACTGGATCAGTAGCCGCCATCTTGACAATGTTGAAGTTACTGATGTTCTCTCGAATTTCCCAGACATCTCAGTGGTTCTGACTGAAGAAATTATGGATAGGCTTGTTGCTGAAGGTGTTCTATCAAAAACTGGAGGGGACAGTTACACAATTAACAGGAAGAAGAAGTCTGACCATGAATTTATCAAGGTAAAAAAAGAAATGGACTGTCAAGTGGTCCCTGATAGTGAAAAAACTCCAAACGCCAATGATCACTTGTACATGAAGGCACTCTATCATGTTCTTCCAATGCAGTATGTGTCAATTGCAAAGCTTCAGAACAAGCTTGGAGGAGAAGCAAATCAGAATACTGTGCGCAAGATGATTGATAAGATGGTGCAAGAAGGTTTGGTTGAAGCCAAGGGAAATCGAAGGCTAGGAAAGCGTGTGCTCCATTCTGATATTACCAAGAAAAAGCTTACTGAAGTCCAGAAAGCTTTAAAGTATGATGCAATGGATGTGGACAACATTGAGCCCCAAAGCAAGTCAAATCATCAAGATTTTTATCCAATTACTAGTAACTACAGAGACACATCCACATGCGGTGCGCTCCACTCCATTGGATCAGATCTGACACGCATGAGAATAAGGGCTAATTCAAATGAACACAGTCCAATGAGGAGTGAGCAGACTACTTCAATAAGAAAGGAGCATGGAAACACCCCCACAAGCTGGGCTCAGCCAGAAATTTCAAGAGAGAGTTTTGCACCTGGTAATGATGAAAACAGAGCAAATTGCTACACAAACTACTGTGATGAAGATGAGAGAGTGATGTGCAGCAGTAGGTCGACGCAAGACAAGCGTTCCAGGAAAACAAGCATGGTCAAGGAGCCTATTCTTCAGTACACAAAGCGCCAGAAATCTCAAGCCCTCTGA

Protein Analysis

525

Amino Acids

60.21

Weight (kDa)

5.25

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HORMA PF02301 1 - 123 8e-31 HORMA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1019
AccB7I CCANNNNNTGG 1 cut(s) 1374
AccI GTMKAC 1 cut(s) 1490
AciI CCGC 3 cut(s) 169, 679, 1245
AclWI GGATC 6 cut(s) 398, 528, 620, 633, 677, 1273
AcsI RAATTY 5 cut(s) 37, 647, 718, 842, 1389
AcuI CTGAAG 7 cut(s) 231, 268, 768, 795, 962, 1146, 1526
AcyI GRCGYC 1 cut(s) 257
AfaI GTAC 2 cut(s) 923, 1547
AfiI CCNNNNNNNGG 4 cut(s) 175, 471, 546, 1374
AgsI TTSAA 9 cut(s) 60, 106, 182, 337, 698, 1058, 1302, 1341, 1395
AhlI ACTAGT 1 cut(s) 1217
AjnI CCWGG 3 cut(s) 48, 1411, 1508
Alw21I GWGCWC 1 cut(s) 1095
Alw26I GTCTC 1 cut(s) 1224
AlwI GGATC 6 cut(s) 398, 528, 620, 633, 677, 1273
ApeKI GCWGC 1 cut(s) 1479
ApoI RAATTY 5 cut(s) 37, 647, 718, 842, 1389
Asp700I GAANNNNTTC 1 cut(s) 780
AspLEI GCGC 4 cut(s) 219, 1020, 1252, 1557
AspS9I GGNCC 2 cut(s) 166, 880
AvaII GGWCC 2 cut(s) 166, 880
AxyI CCTNAGG 1 cut(s) 579
BamHI GGATCC 1 cut(s) 625
BanII GRGCYC 2 cut(s) 1179, 1381
Bbv12I GWGCWC 1 cut(s) 1095
BbvI GCAGC 1 cut(s) 1491
BccI CCATC 2 cut(s) 690, 1030
BciT130I CCWGG 3 cut(s) 50, 1413, 1510
BclI TGATCA 1 cut(s) 913
BcoDI GTCTC 1 cut(s) 1224
BcuI ACTAGT 1 cut(s) 1217
BfaI CTAG 4 cut(s) 546, 654, 1079, 1218
BfmI CTRYAG 2 cut(s) 609, 1225
BfoI RGCGCY 1 cut(s) 1558
BglII AGATCT 1 cut(s) 1270
BisI GCNGC 2 cut(s) 679, 1480
BlpI GCTNAGC 1 cut(s) 1380
BlsI GCNGC 2 cut(s) 680, 1481
Bme1390I CCNGG 3 cut(s) 50, 1413, 1510
Bme18I GGWCC 2 cut(s) 166, 880
BmgT120I GGNCC 2 cut(s) 166, 880
BmiI GGNNCC 3 cut(s) 627, 882, 1533
BmrFI CCNGG 3 cut(s) 50, 1413, 1510
BmsI GCATC 3 cut(s) 195, 376, 1141
BpmI CTGGAG 1 cut(s) 816
Bpu10I CCTNAGC 1 cut(s) 451
Bpu1102I GCTNAGC 1 cut(s) 1380
BpuEI CTTGAG 3 cut(s) 368, 417, 1551
Bsa29I ATCGAT 1 cut(s) 523
BsaBI GATNNNNATC 1 cut(s) 1206
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 317, 1062
Bsc4I CCNNNNNNNGG 4 cut(s) 175, 471, 546, 1374
Bse1I ACTGG 4 cut(s) 180, 260, 671, 799
Bse21I CCTNAGG 1 cut(s) 579
Bse3DI GCAATG 1 cut(s) 1161
Bse8I GATNNNNATC 1 cut(s) 1206
BseBI CCWGG 3 cut(s) 50, 1413, 1510
BseCI ATCGAT 1 cut(s) 523
BseDI CCNNGG 2 cut(s) 317, 1062
BseGI GGATG 6 cut(s) 210, 421, 481, 604, 1165, 1235
BseJI GATNNNNATC 1 cut(s) 1206
BseLI CCNNNNNNNGG 4 cut(s) 175, 471, 546, 1374
BseMI GCAATG 1 cut(s) 1161
BseMII CTCAG 4 cut(s) 593, 635, 747, 1394
BseNI ACTGG 4 cut(s) 180, 260, 671, 799
BseRI GAGGAG 2 cut(s) 1008, 1336
BseXI GCAGC 1 cut(s) 1491
BseYI CCCAGC 1 cut(s) 1374
BsgI GTGCAG 1 cut(s) 1498
BshVI ATCGAT 1 cut(s) 523
BsiHKAI GWGCWC 1 cut(s) 1095
BslFI GGGAC 2 cut(s) 815, 866
BslI CCNNNNNNNGG 4 cut(s) 175, 471, 546, 1374
BsmAI GTCTC 1 cut(s) 1224
BsmFI GGGAC 2 cut(s) 815, 866
Bsp1286I GDGCHC 3 cut(s) 1095, 1179, 1381
Bsp1407I TGTACA 1 cut(s) 921
Bsp143I GATC 7 cut(s) 403, 520, 625, 669, 913, 1265, 1270
Bsp1720I GCTNAGC 1 cut(s) 1380
Bsp19I CCATGG 1 cut(s) 317
BspACI CCGC 3 cut(s) 169, 679, 1245
BspCNI CTCAG 4 cut(s) 592, 634, 746, 1393
BspDI ATCGAT 1 cut(s) 523
BspLI GGNNCC 3 cut(s) 627, 882, 1533
BspPI GGATC 6 cut(s) 398, 528, 620, 633, 677, 1273
BspQI GCTCTTC 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 1161
BsrGI TGTACA 1 cut(s) 921
BsrI ACTGG 4 cut(s) 180, 260, 671, 799
BssECI CCNNGG 2 cut(s) 317, 1062
BssMI GATC 7 cut(s) 403, 520, 625, 669, 913, 1265, 1270
BssNI GRCGYC 1 cut(s) 257
BssT1I CCWWGG 2 cut(s) 317, 1062
Bst2UI CCWGG 3 cut(s) 50, 1413, 1510
Bst4CI ACNGT 6 cut(s) 497, 806, 872, 1015, 1313, 1454
Bst6I CTCTTC 1 cut(s) 207
BstACI GRCGYC 1 cut(s) 257
BstAUI TGTACA 1 cut(s) 921
BstC8I GCNNGC 2 cut(s) 365, 398
BstDEI CTNAG 6 cut(s) 376, 451, 579, 621, 733, 1380
BstDSI CCRYGG 1 cut(s) 317
BstF5I GGATG 6 cut(s) 210, 421, 481, 604, 1165, 1235
BstH2I RGCGCY 1 cut(s) 1558
BstHHI GCGC 4 cut(s) 219, 1020, 1252, 1557
BstKTI GATC 7 cut(s) 406, 523, 628, 672, 916, 1268, 1273
BstMAI GTCTC 1 cut(s) 1224
BstMBI GATC 7 cut(s) 403, 520, 625, 669, 913, 1265, 1270
BstMWI GCNNNNNNNGC 4 cut(s) 214, 542, 1084, 1501
BstNI CCWGG 3 cut(s) 50, 1413, 1510
BstNSI RCATGY 1 cut(s) 1245
BstSCI CCNGG 3 cut(s) 48, 1411, 1508
BstSFI CTRYAG 2 cut(s) 609, 1225
BstV1I GCAGC 1 cut(s) 1491
BstX2I RGATCY 2 cut(s) 625, 1270
BstXI CCANNNNNNTGG 1 cut(s) 1262
BstYI RGATCY 2 cut(s) 625, 1270
Bsu15I ATCGAT 1 cut(s) 523
Bsu36I CCTNAGG 1 cut(s) 579
BsuTUI ATCGAT 1 cut(s) 523
BtgI CCRYGG 1 cut(s) 317
BtsCI GGATG 6 cut(s) 210, 421, 481, 604, 1165, 1235
BtsIMutI CAGTG 3 cut(s) 173, 502, 741
Cac8I GCNNGC 2 cut(s) 365, 398
CfoI GCGC 4 cut(s) 219, 1020, 1252, 1557
Cfr13I GGNCC 2 cut(s) 166, 880
ClaI ATCGAT 1 cut(s) 523
CseI GACGC 2 cut(s) 265, 1501
CsiI ACCWGGT 1 cut(s) 1411
Csp6I GTAC 2 cut(s) 922, 1546
CspCI CAANNNNNGTGG 2 cut(s) 1143, 1178
CviQI GTAC 2 cut(s) 922, 1546
DdeI CTNAG 6 cut(s) 376, 451, 579, 621, 733, 1380
DpnI GATC 7 cut(s) 405, 522, 627, 671, 915, 1267, 1272
DpnII GATC 7 cut(s) 403, 520, 625, 669, 913, 1265, 1270
DraI TTTAAA 1 cut(s) 1143
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
Eco130I CCWWGG 2 cut(s) 317, 1062
Eco24I GRGCYC 2 cut(s) 1179, 1381
Eco47I GGWCC 2 cut(s) 166, 880
Eco57I CTGAAG 7 cut(s) 231, 268, 768, 795, 962, 1146, 1526
Eco81I CCTNAGG 1 cut(s) 579
EcoRII CCWGG 3 cut(s) 48, 1411, 1508
EcoT14I CCWWGG 2 cut(s) 317, 1062
EcoT38I GRGCYC 2 cut(s) 1179, 1381
ErhI CCWWGG 2 cut(s) 317, 1062
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FaqI GGGAC 2 cut(s) 815, 866
FbaI TGATCA 1 cut(s) 913
FblI GTMKAC 1 cut(s) 1490
Fnu4HI GCNGC 2 cut(s) 679, 1480
FokI GGATG 6 cut(s) 217, 428, 488, 611, 1172, 1222
FriOI GRGCYC 2 cut(s) 1179, 1381
Fsp4HI GCNGC 2 cut(s) 679, 1480
FspBI CTAG 4 cut(s) 546, 654, 1079, 1218
FspI TGCGCA 1 cut(s) 1019
GlaI GCGC 4 cut(s) 218, 1019, 1251, 1556
GluI GCNGC 2 cut(s) 679, 1480
GsaI CCCAGC 1 cut(s) 1378
GsuI CTGGAG 1 cut(s) 816
HaeII RGCGCY 1 cut(s) 1558
HgaI GACGC 2 cut(s) 265, 1501
HhaI GCGC 4 cut(s) 219, 1020, 1252, 1557
Hin1I GRCGYC 1 cut(s) 257
Hin6I GCGC 4 cut(s) 217, 1018, 1250, 1555
HinP1I GCGC 4 cut(s) 217, 1018, 1250, 1555
HincII GTYRAC 3 cut(s) 505, 589, 1491
HindII GTYRAC 3 cut(s) 505, 589, 1491
HindIII AAGCTT 4 cut(s) 974, 986, 1118, 1137
HinfI GANTC 3 cut(s) 113, 328, 461
HpaI GTTAAC 2 cut(s) 505, 589
Hpy166II GTNNAC 6 cut(s) 358, 505, 589, 1165, 1491, 1548
Hpy8I GTNNAC 6 cut(s) 358, 505, 589, 1165, 1491, 1548
Hpy99I CGWCG 1 cut(s) 1495
HpyAV CCTTC 4 cut(s) 770, 922, 1040, 1068
HpyCH4III ACNGT 6 cut(s) 497, 806, 872, 1015, 1313, 1454
HpyCH4V TGCA 8 cut(s) 294, 469, 955, 971, 1042, 1154, 1409, 1479
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 542, 1084, 1501
HpyF3I CTNAG 6 cut(s) 376, 451, 579, 621, 733, 1380
Hsp92I GRCGYC 1 cut(s) 257
HspAI GCGC 4 cut(s) 217, 1018, 1250, 1555
Ksp22I TGATCA 1 cut(s) 913
KspAI GTTAAC 2 cut(s) 505, 589
Kzo9I GATC 7 cut(s) 403, 520, 625, 669, 913, 1265, 1270
LguI GCTCTTC 1 cut(s) 207
LmnI GCTCC 5 cut(s) 455, 1098, 1257, 1351, 1531
Lsp1109I GCAGC 1 cut(s) 1491
LweI GCATC 3 cut(s) 195, 376, 1141
MabI ACCWGGT 1 cut(s) 1411
MaeI CTAG 4 cut(s) 546, 654, 1079, 1218
MaeIII GTNAC 6 cut(s) 29, 110, 253, 700, 806, 1220
MalI GATC 7 cut(s) 405, 522, 627, 671, 915, 1267, 1272
MboI GATC 7 cut(s) 403, 520, 625, 669, 913, 1265, 1270
MfeI CAATTG 1 cut(s) 966
MflI RGATCY 2 cut(s) 625, 1270
MhlI GDGCHC 3 cut(s) 1095, 1179, 1381
MlyI GAGTC 2 cut(s) 107, 455
MroXI GAANNNNTTC 1 cut(s) 780
MseI TTAA 4 cut(s) 504, 588, 816, 1142
MslI CAYNNNNRTG 4 cut(s) 106, 227, 734, 1240
MspR9I CCNGG 3 cut(s) 50, 1413, 1510
MunI CAATTG 1 cut(s) 966
MvaI CCWGG 3 cut(s) 50, 1413, 1510
MwoI GCNNNNNNNGC 4 cut(s) 214, 542, 1084, 1501
NcoI CCATGG 1 cut(s) 317
NdeII GATC 7 cut(s) 403, 520, 625, 669, 913, 1265, 1270
NlaIV GGNNCC 3 cut(s) 627, 882, 1533
NmuCI GTSAC 2 cut(s) 110, 253
NsbI TGCGCA 1 cut(s) 1019
NspI RCATGY 1 cut(s) 1245
PciSI GCTCTTC 1 cut(s) 207
PdmI GAANNNNTTC 1 cut(s) 780
PfeI GAWTC 1 cut(s) 328
PflMI CCANNNNNTGG 1 cut(s) 1374
PfoI TCCNGGA 1 cut(s) 1508
PkrI GCNGC 2 cut(s) 680, 1481
PleI GAGTC 2 cut(s) 107, 455
PpsI GAGTC 2 cut(s) 107, 455
Psp6I CCWGG 3 cut(s) 48, 1411, 1508
PspFI CCCAGC 1 cut(s) 1374
PspGI CCWGG 3 cut(s) 48, 1411, 1508
PspN4I GGNNCC 3 cut(s) 627, 882, 1533
PspPI GGNCC 2 cut(s) 166, 880
PsuI RGATCY 2 cut(s) 625, 1270
RsaI GTAC 2 cut(s) 923, 1547
RsaNI GTAC 2 cut(s) 922, 1546
RseI CAYNNNNRTG 4 cut(s) 106, 227, 734, 1240
SalI GTCGAC 1 cut(s) 1489
SapI GCTCTTC 1 cut(s) 207
SaqAI TTAA 4 cut(s) 504, 588, 816, 1142
SatI GCNGC 2 cut(s) 679, 1480
Sau3AI GATC 7 cut(s) 403, 520, 625, 669, 913, 1265, 1270
Sau96I GGNCC 2 cut(s) 166, 880
SchI GAGTC 2 cut(s) 107, 455
ScrFI CCNGG 3 cut(s) 50, 1413, 1510
SduI GDGCHC 3 cut(s) 1095, 1179, 1381
SexAI ACCWGGT 1 cut(s) 1411
SfaNI GCATC 3 cut(s) 195, 376, 1141
SfcI CTRYAG 2 cut(s) 609, 1225
SinI GGWCC 2 cut(s) 166, 880
SmiMI CAYNNNNRTG 4 cut(s) 106, 227, 734, 1240
SmlI CTYRAG 3 cut(s) 383, 432, 1566
SmoI CTYRAG 3 cut(s) 383, 432, 1566
SpeI ACTAGT 1 cut(s) 1217
SsiI CCGC 3 cut(s) 169, 679, 1245
SspMI CTAG 4 cut(s) 546, 654, 1079, 1218
StyD4I CCNGG 3 cut(s) 48, 1411, 1508
StyI CCWWGG 2 cut(s) 317, 1062
TaaI ACNGT 6 cut(s) 497, 806, 872, 1015, 1313, 1454
TaqI TCGA 4 cut(s) 523, 716, 1072, 1490
TatI WGTACW 2 cut(s) 921, 1545
TauI GCSGC 1 cut(s) 681
TfiI GAWTC 1 cut(s) 328
Tru1I TTAA 4 cut(s) 504, 588, 816, 1142
Tru9I TTAA 4 cut(s) 504, 588, 816, 1142
TscAI CASTG 3 cut(s) 180, 502, 741
TseFI GTSAC 2 cut(s) 110, 253
TseI GCWGC 1 cut(s) 1479
Tsp45I GTSAC 2 cut(s) 110, 253
TspRI CASTG 3 cut(s) 180, 502, 741
Van91I CCANNNNNTGG 1 cut(s) 1374
VpaK11BI GGWCC 2 cut(s) 166, 880
XapI RAATTY 5 cut(s) 37, 647, 718, 842, 1389
XceI RCATGY 1 cut(s) 1245
XmiI GTMKAC 1 cut(s) 1490
XmnI GAANNNNTTC 1 cut(s) 780
XspI CTAG 4 cut(s) 546, 654, 1079, 1218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.