Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000131.1

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Forward (+)

278134 .. 281055

Gene Structure 2922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000131.1_g000059.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

atgactttgcgtgccaaaagctcacagagttttctgacatttcagccagtagattatgagcctccattcttcagatgttgcacagaagaagaaactcataacccatggacaaagaatcctttgaaaatggagctcgggaatgtgaacagcaagcatcttgtcttagctctcaaggtcaggagtaaagagtgtgatccctgtgaggacgaaaatgatgataatcaagatgatgaagtgagcttaggagctgactccatgcaaagggatgactcttctgaaactgacagtgaggttaaccaatcacaagaggctagatatatagttgcccccatagctaagcgacaaccacaggaggataacagcataactcaggaagttaacagcatggatgatgaagctacagatgatactcaggatccagaggaagatgaaaagcaattttctaggataaaggactggatcagtagccgccatcttgacaatgttgaagttactgatgttctcccgaatttcccagacatcccagtggcactctatcatgttcttccaatgcagtatgtgtcaattgcgaagcttcagaacaagcttggaggagaagcaaatcagaatactgtgcgcaaggtgattgataagatggtgcaagaaggtttggttgaagccaagggaaatcgaaggctaggaaagcgtgtgctccattctgatattaccaagaaaaagcttactgaagtccagaaagctttgaattatgatgcaatgccagaaatttcaagagagagttttgcacctggtaatgatgaaaacagagcaaattgctacataaactactgtgatgaagatgagagagtgatgtgcagcagtagatcgacgcaagacaagcgttccaggaaaacaagcatggtcaaggagcctattcttcagtacacaaagcgccagaaatctcaagccctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

316

Amino Acids

36.23

Weight (kDa)

4.94

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	617
AciI	CCGC	1 cut(s)	469
AclWI	GGATC	4 cut(s)	188, 410, 423, 467
AcsI	RAATTY	2 cut(s)	508, 762
AcuI	CTGAAG	4 cut(s)	55, 560, 744, 899
AfaI	GTAC	1 cut(s)	920
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	5 cut(s)	124, 488, 656, 742, 768
AjnI	CCWGG	2 cut(s)	784, 881
Alw21I	GWGCWC	2 cut(s)	135, 693
AlwI	GGATC	4 cut(s)	188, 410, 423, 467
Ama87I	CYCGRG	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	852
ApoI	RAATTY	2 cut(s)	508, 762
AspLEI	GCGC	2 cut(s)	618, 930
AsuHPI	GGTGA	1 cut(s)	634
AvaI	CYCGRG	1 cut(s)	134
BamHI	GGATCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	135, 693
BbvI	GCAGC	1 cut(s)	864
BccI	CCATC	2 cut(s)	480, 628
BciT130I	CCWGG	2 cut(s)	786, 883
BfaI	CTAG	3 cut(s)	312, 444, 677
BfmI	CTRYAG	1 cut(s)	399
BfoI	RGCGCY	1 cut(s)	931
BisI	GCNGC	2 cut(s)	469, 853
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	2 cut(s)	470, 854
Bme1390I	CCNGG	2 cut(s)	786, 883
BmeT110I	CYCGRG	1 cut(s)	134
BmiI	GGNNCC	2 cut(s)	417, 906
BmrFI	CCNGG	2 cut(s)	786, 883
BmrI	ACTGGG	1 cut(s)	518
BmsI	GCATC	2 cut(s)	163, 739
BmuI	ACTGGG	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	241
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	2 cut(s)	155, 924
BsaBI	GATNNNNATC	1 cut(s)	219
BsaJI	CCNNGG	2 cut(s)	104, 660
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	3 cut(s)	47, 461, 524
Bse3DI	GCAATG	1 cut(s)	759
Bse8I	GATNNNNATC	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	786, 883
BseDI	CCNNGG	2 cut(s)	104, 660
BseGI	GGATG	3 cut(s)	271, 394, 519
BseJI	GATNNNNATC	1 cut(s)	219
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	1 cut(s)	759
BseMII	CTCAG	2 cut(s)	383, 425
BseNI	ACTGG	3 cut(s)	47, 461, 524
BseRI	GAGGAG	1 cut(s)	606
BseXI	GCAGC	1 cut(s)	864
BsgI	GTGCAG	1 cut(s)	871
BsiHKAI	GWGCWC	2 cut(s)	135, 693
BsiHKCI	CYCGRG	1 cut(s)	134
BslI	CCNNNNNNNGG	1 cut(s)	261
BsoBI	CYCGRG	1 cut(s)	134
Bsp1286I	GDGCHC	2 cut(s)	135, 693
Bsp143I	GATC	4 cut(s)	193, 415, 459, 860
Bsp1720I	GCTNAGC	1 cut(s)	336
Bsp19I	CCATGG	1 cut(s)	104
BspACI	CCGC	1 cut(s)	469
BspCNI	CTCAG	2 cut(s)	382, 424
BspLI	GGNNCC	2 cut(s)	417, 906
BspPI	GGATC	4 cut(s)	188, 410, 423, 467
BsrDI	GCAATG	1 cut(s)	759
BsrI	ACTGG	3 cut(s)	47, 461, 524
BssECI	CCNNGG	2 cut(s)	104, 660
BssMI	GATC	4 cut(s)	193, 415, 459, 860
BssT1I	CCWWGG	2 cut(s)	104, 660
Bst2UI	CCWGG	2 cut(s)	786, 883
Bst4CI	ACNGT	3 cut(s)	287, 613, 827
Bst6I	CTCTTC	1 cut(s)	277
BstC8I	GCNNGC	2 cut(s)	12, 152
BstDEI	CTNAG	5 cut(s)	163, 241, 336, 369, 411
BstDSI	CCRYGG	1 cut(s)	104
BstF5I	GGATG	3 cut(s)	271, 394, 519
BstH2I	RGCGCY	1 cut(s)	931
BstHHI	GCGC	2 cut(s)	618, 930
BstKTI	GATC	4 cut(s)	196, 418, 462, 863
BstMBI	GATC	4 cut(s)	193, 415, 459, 860
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 682, 874
BstNI	CCWGG	2 cut(s)	786, 883
BstSCI	CCNGG	2 cut(s)	784, 881
BstSFI	CTRYAG	1 cut(s)	399
BstV1I	GCAGC	1 cut(s)	864
BstX2I	RGATCY	1 cut(s)	415
BstYI	RGATCY	1 cut(s)	415
BtgI	CCRYGG	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	271, 394, 519
BtsIMutI	CAGTG	2 cut(s)	292, 531
Cac8I	GCNNGC	2 cut(s)	12, 152
CfoI	GCGC	2 cut(s)	618, 930
CseI	GACGC	1 cut(s)	874
CsiI	ACCWGGT	1 cut(s)	784
Csp6I	GTAC	1 cut(s)	919
CviAII	CATG	5 cut(s)	105, 256, 385, 539, 895
CviQI	GTAC	1 cut(s)	919
DdeI	CTNAG	5 cut(s)	163, 241, 336, 369, 411
DpnI	GATC	4 cut(s)	195, 417, 461, 862
DpnII	GATC	4 cut(s)	193, 415, 459, 860
Eam1104I	CTCTTC	1 cut(s)	277
EarI	CTCTTC	1 cut(s)	277
Ecl136II	GAGCTC	1 cut(s)	133
Eco130I	CCWWGG	2 cut(s)	104, 660
Eco24I	GRGCYC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	4 cut(s)	55, 560, 744, 899
Eco88I	CYCGRG	1 cut(s)	134
EcoICRI	GAGCTC	1 cut(s)	133
EcoRII	CCWGG	2 cut(s)	784, 881
EcoT14I	CCWWGG	2 cut(s)	104, 660
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	2 cut(s)	104, 660
FaeI	CATG	5 cut(s)	108, 259, 388, 542, 898
FatI	CATG	5 cut(s)	104, 255, 384, 538, 894
Fnu4HI	GCNGC	2 cut(s)	469, 853
FokI	GGATG	3 cut(s)	278, 401, 506
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	2 cut(s)	469, 853
FspBI	CTAG	3 cut(s)	312, 444, 677
FspI	TGCGCA	1 cut(s)	617
GlaI	GCGC	2 cut(s)	617, 929
GluI	GCNGC	2 cut(s)	469, 853
HaeII	RGCGCY	1 cut(s)	931
HgaI	GACGC	1 cut(s)	874
HhaI	GCGC	2 cut(s)	618, 930
Hin1II	CATG	5 cut(s)	108, 259, 388, 542, 898
Hin6I	GCGC	2 cut(s)	616, 928
HinP1I	GCGC	2 cut(s)	616, 928
HincII	GTYRAC	2 cut(s)	295, 379
HindII	GTYRAC	2 cut(s)	295, 379
HindIII	AAGCTT	4 cut(s)	572, 584, 716, 735
HinfI	GANTC	3 cut(s)	115, 251, 269
HpaI	GTTAAC	2 cut(s)	295, 379
HphI	GGTGA	1 cut(s)	634
Hpy166II	GTNNAC	4 cut(s)	145, 295, 379, 921
Hpy188I	TCNGA	7 cut(s)	36, 74, 277, 579, 606, 700, 950
Hpy8I	GTNNAC	4 cut(s)	145, 295, 379, 921
Hpy99I	CGWCG	1 cut(s)	868
HpyAV	CCTTC	2 cut(s)	638, 666
HpyCH4III	ACNGT	3 cut(s)	287, 613, 827
HpyCH4V	TGCA	7 cut(s)	81, 259, 553, 640, 752, 782, 852
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 682, 874
HpyF3I	CTNAG	5 cut(s)	163, 241, 336, 369, 411
Hsp92II	CATG	5 cut(s)	108, 259, 388, 542, 898
HspAI	GCGC	2 cut(s)	616, 928
KspAI	GTTAAC	2 cut(s)	295, 379
Kzo9I	GATC	4 cut(s)	193, 415, 459, 860
LmnI	GCTCC	4 cut(s)	130, 245, 696, 904
Lsp1109I	GCAGC	1 cut(s)	864
LweI	GCATC	2 cut(s)	163, 739
MabI	ACCWGGT	1 cut(s)	784
MaeI	CTAG	3 cut(s)	312, 444, 677
MaeIII	GTNAC	1 cut(s)	490
MalI	GATC	4 cut(s)	195, 417, 461, 862
MboI	GATC	4 cut(s)	193, 415, 459, 860
MboII	GAAGA	8 cut(s)	61, 98, 101, 264, 437, 536, 845, 905
MfeI	CAATTG	1 cut(s)	564
MflI	RGATCY	1 cut(s)	415
MhlI	GDGCHC	2 cut(s)	135, 693
MluCI	AATT	6 cut(s)	437, 508, 564, 742, 762, 808
MlyI	GAGTC	2 cut(s)	245, 263
MnlI	CCTC	7 cut(s)	72, 196, 283, 301, 346, 415, 584
MseI	TTAA	2 cut(s)	294, 378
MslI	CAYNNNNRTG	1 cut(s)	524
MspR9I	CCNGG	2 cut(s)	786, 883
MunI	CAATTG	1 cut(s)	564
MvaI	CCWGG	2 cut(s)	786, 883
MwoI	GCNNNNNNNGC	3 cut(s)	332, 682, 874
NcoI	CCATGG	1 cut(s)	104
NdeII	GATC	4 cut(s)	193, 415, 459, 860
NlaIII	CATG	5 cut(s)	108, 259, 388, 542, 898
NlaIV	GGNNCC	2 cut(s)	417, 906
NsbI	TGCGCA	1 cut(s)	617
PfeI	GAWTC	1 cut(s)	115
PfoI	TCCNGGA	1 cut(s)	881
PkrI	GCNGC	2 cut(s)	470, 854
PleI	GAGTC	2 cut(s)	245, 263
PpsI	GAGTC	2 cut(s)	245, 263
Psp124BI	GAGCTC	1 cut(s)	135
Psp6I	CCWGG	2 cut(s)	784, 881
PspGI	CCWGG	2 cut(s)	784, 881
PspN4I	GGNNCC	2 cut(s)	417, 906
PsuI	RGATCY	1 cut(s)	415
RsaI	GTAC	1 cut(s)	920
RsaNI	GTAC	1 cut(s)	919
RseI	CAYNNNNRTG	1 cut(s)	524
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	2 cut(s)	294, 378
SatI	GCNGC	2 cut(s)	469, 853
Sau3AI	GATC	4 cut(s)	193, 415, 459, 860
SchI	GAGTC	2 cut(s)	245, 263
ScrFI	CCNGG	2 cut(s)	786, 883
SduI	GDGCHC	2 cut(s)	135, 693
SexAI	ACCWGGT	1 cut(s)	784
SfaNI	GCATC	2 cut(s)	163, 739
SfcI	CTRYAG	1 cut(s)	399
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	170, 939
SmoI	CTYRAG	2 cut(s)	170, 939
Sse9I	AATT	6 cut(s)	437, 508, 564, 742, 762, 808
SsiI	CCGC	1 cut(s)	469
SspMI	CTAG	3 cut(s)	312, 444, 677
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	2 cut(s)	784, 881
StyI	CCWWGG	2 cut(s)	104, 660
TaaI	ACNGT	3 cut(s)	287, 613, 827
TaqI	TCGA	2 cut(s)	670, 863
TasI	AATT	6 cut(s)	437, 508, 564, 742, 762, 808
TatI	WGTACW	1 cut(s)	918
TauI	GCSGC	1 cut(s)	471
TfiI	GAWTC	1 cut(s)	115
Tru1I	TTAA	2 cut(s)	294, 378
Tru9I	TTAA	2 cut(s)	294, 378
TscAI	CASTG	2 cut(s)	292, 531
TseI	GCWGC	1 cut(s)	852
TspDTI	ATGAA	5 cut(s)	246, 408, 444, 810, 846
TspRI	CASTG	2 cut(s)	292, 531
XapI	RAATTY	2 cut(s)	508, 762
XspI	CTAG	3 cut(s)	312, 444, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.