Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Reverse (-)

26164870 .. 26166846

Gene Structure 1977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g23791.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGACAAGCTTGTTGTGGAAGGCACTCTATCAAAAACTGGAGGGGACACATACATTATCAAAAAGAAGTCTGATTATGAGTTCACTGTGGTAAAACAAGAAATTAATGGTCAAGCAATCCTGGTTGGTGACAAAACTCCCAAGTCTAATGATCACATGTACATGAAGGCGCTGTGTCATGCTCTTCCCATGCAGTATGTGTCAGTTCCAAAGCTTCAGCACAAGCTCGGAGGAGAAGCAAATCAGAACACAGTGCGCAAGATGATTGATAAAATGACACAAGAAGGTTTTGTTGAAGCTAAAGGCAACGGAAGGCTAGGAAAGCGTGTGATCCGTTCTGTTGTTACAGAGAAAAAGCTTATTGAAGTCCAGAAAGCTTTGAAATACGATGCTATGGATGTTGACAACGTTGAACCACCAAGCAAGTCAAGTCATCTAGATTTTCATTCAATGGGAAGTAACCAGAGAGACACATCCACATGTGGTGTGCTCCACTCGATCGGATCAGATCTCACACGCATGAAAATAAGGCTTAATTCACAGGAATATAGTCTAAATAAGAGTGAGCAGACTACTTCAAAGACAACGGGGCAGGGAAACACTCCCACAAGCAGGGCTCAGCCAGTAGTTTCGAGAGAGAGCTTTGCACACGGAAATGATGAAACCAGAACAATTGGCAACACAAACCACTATAATGATGGGGACAGAGTGATTTCTAGTATGTCCACCCAAGGCAAGCGTTCCAGAAAAACAAGCACGGTGAAGGAGCCTATTCTTCAGTACGCAAAGCGCCAGAGATCTCAAGCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA NIF REF

Protein Analysis

271

Amino Acids

30.05

Weight (kDa)

9.62

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	257
AclI	AACGTT	1 cut(s)	408
AclWI	GGATC	2 cut(s)	325, 511
AcuI	CTGAAG	2 cut(s)	200, 761
AfaI	GTAC	2 cut(s)	161, 782
AfiI	CCNNNNNNNGG	1 cut(s)	612
AflIII	ACRYGT	2 cut(s)	156, 479
AgsI	TTSAA	6 cut(s)	296, 365, 382, 413, 450, 579
AjnI	CCWGG	1 cut(s)	120
AluBI	AGCT	7 cut(s)	10, 214, 226, 299, 358, 377, 642
AluI	AGCT	7 cut(s)	10, 214, 226, 299, 358, 377, 642
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	462
AlwI	GGATC	2 cut(s)	325, 511
AseI	ATTAAT	1 cut(s)	105
AspLEI	GCGC	3 cut(s)	172, 258, 792
AsuHPI	GGTGA	2 cut(s)	140, 772
BanII	GRGCYC	1 cut(s)	619
Bbv12I	GWGCWC	1 cut(s)	492
BccI	CCATC	1 cut(s)	692
BceAI	ACGGC	1 cut(s)	791
BciT130I	CCWGG	1 cut(s)	122
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	462
BfaI	CTAG	3 cut(s)	317, 437, 717
BfoI	RGCGCY	2 cut(s)	173, 793
BglII	AGATCT	2 cut(s)	508, 797
BlpI	GCTNAGC	1 cut(s)	618
Bme1390I	CCNGG	1 cut(s)	122
BmiI	GGNNCC	1 cut(s)	768
BmrFI	CCNGG	1 cut(s)	122
BmsI	GCATC	1 cut(s)	379
BpmI	CTGGAG	1 cut(s)	60
Bpu1102I	GCTNAGC	1 cut(s)	618
BpuEI	CTTGAG	1 cut(s)	786
BsaJI	CCNNGG	1 cut(s)	730
Bsc4I	CCNNNNNNNGG	1 cut(s)	612
Bse1I	ACTGG	2 cut(s)	43, 623
BseBI	CCWGG	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	730
BseGI	GGATG	2 cut(s)	403, 473
BseLI	CCNNNNNNNGG	1 cut(s)	612
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	2 cut(s)	43, 623
BseRI	GAGGAG	1 cut(s)	246
Bsh1285I	CGRYCG	1 cut(s)	501
BsiEI	CGRYCG	1 cut(s)	501
BsiHKAI	GWGCWC	1 cut(s)	492
BslFI	GGGAC	2 cut(s)	59, 716
BslI	CCNNNNNNNGG	1 cut(s)	612
BsmAI	GTCTC	1 cut(s)	462
BsmFI	GGGAC	2 cut(s)	59, 716
Bsp1286I	GDGCHC	2 cut(s)	492, 619
Bsp1407I	TGTACA	1 cut(s)	159
Bsp143I	GATC	6 cut(s)	151, 330, 498, 503, 508, 797
Bsp1720I	GCTNAGC	1 cut(s)	618
BspCNI	CTCAG	1 cut(s)	631
BspLI	GGNNCC	1 cut(s)	768
BspPI	GGATC	2 cut(s)	325, 511
BspQI	GCTCTTC	1 cut(s)	189
BsrGI	TGTACA	1 cut(s)	159
BsrI	ACTGG	2 cut(s)	43, 623
BssECI	CCNNGG	1 cut(s)	730
BssMI	GATC	6 cut(s)	151, 330, 498, 503, 508, 797
BssT1I	CCWWGG	1 cut(s)	730
Bst2UI	CCWGG	1 cut(s)	122
Bst4CI	ACNGT	3 cut(s)	88, 253, 760
Bst6I	CTCTTC	1 cut(s)	189
BstAUI	TGTACA	1 cut(s)	159
BstC8I	GCNNGC	1 cut(s)	737
BstDEI	CTNAG	1 cut(s)	618
BstF5I	GGATG	2 cut(s)	403, 473
BstH2I	RGCGCY	2 cut(s)	173, 793
BstHHI	GCGC	3 cut(s)	172, 258, 792
BstKTI	GATC	6 cut(s)	154, 333, 501, 506, 511, 800
BstMAI	GTCTC	1 cut(s)	462
BstMBI	GATC	6 cut(s)	151, 330, 498, 503, 508, 797
BstMCI	CGRYCG	1 cut(s)	501
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstNI	CCWGG	1 cut(s)	122
BstNSI	RCATGY	2 cut(s)	160, 483
BstSCI	CCNGG	1 cut(s)	120
BstX2I	RGATCY	2 cut(s)	508, 797
BstYI	RGATCY	2 cut(s)	508, 797
BtsCI	GGATG	2 cut(s)	403, 473
BtsIMutI	CAGTG	2 cut(s)	84, 258
Cac8I	GCNNGC	1 cut(s)	737
CfoI	GCGC	3 cut(s)	172, 258, 792
Csp6I	GTAC	2 cut(s)	160, 781
CviAII	CATG	6 cut(s)	157, 163, 179, 190, 480, 520
CviQI	GTAC	2 cut(s)	160, 781
DdeI	CTNAG	1 cut(s)	618
DpnI	GATC	6 cut(s)	153, 332, 500, 505, 510, 799
DpnII	GATC	6 cut(s)	151, 330, 498, 503, 508, 797
Eam1104I	CTCTTC	1 cut(s)	189
EarI	CTCTTC	1 cut(s)	189
Eco130I	CCWWGG	1 cut(s)	730
Eco24I	GRGCYC	1 cut(s)	619
Eco57I	CTGAAG	2 cut(s)	200, 761
EcoRII	CCWGG	1 cut(s)	120
EcoT14I	CCWWGG	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	619
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	6 cut(s)	160, 166, 182, 193, 483, 523
FaqI	GGGAC	2 cut(s)	59, 716
FatI	CATG	6 cut(s)	156, 162, 178, 189, 479, 519
FbaI	TGATCA	1 cut(s)	151
FokI	GGATG	2 cut(s)	410, 460
FriOI	GRGCYC	1 cut(s)	619
FspBI	CTAG	3 cut(s)	317, 437, 717
FspI	TGCGCA	1 cut(s)	257
GlaI	GCGC	3 cut(s)	171, 257, 791
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	2 cut(s)	173, 793
HhaI	GCGC	3 cut(s)	172, 258, 792
Hin1II	CATG	6 cut(s)	160, 166, 182, 193, 483, 523
Hin6I	GCGC	3 cut(s)	170, 256, 790
HinP1I	GCGC	3 cut(s)	170, 256, 790
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	4 cut(s)	8, 212, 356, 375
HphI	GGTGA	2 cut(s)	140, 772
Hpy166II	GTNNAC	3 cut(s)	84, 403, 726
Hpy188I	TCNGA	6 cut(s)	73, 230, 246, 503, 508, 812
Hpy188III	TCNNGA	4 cut(s)	370, 437, 633, 744
Hpy8I	GTNNAC	3 cut(s)	84, 403, 726
HpyAV	CCTTC	5 cut(s)	14, 160, 278, 306, 757
HpyCH4III	ACNGT	3 cut(s)	88, 253, 760
HpyCH4IV	ACGT	1 cut(s)	408
HpyCH4V	TGCA	2 cut(s)	193, 647
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	1 cut(s)	618
HpySE526I	ACGT	1 cut(s)	408
Hsp92II	CATG	6 cut(s)	160, 166, 182, 193, 483, 523
HspAI	GCGC	3 cut(s)	170, 256, 790
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	6 cut(s)	151, 330, 498, 503, 508, 797
LguI	GCTCTTC	1 cut(s)	189
LmnI	GCTCC	2 cut(s)	495, 766
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	3 cut(s)	317, 437, 717
MaeII	ACGT	1 cut(s)	408
MaeIII	GTNAC	3 cut(s)	128, 343, 458
MalI	GATC	6 cut(s)	153, 332, 500, 505, 510, 799
MboI	GATC	6 cut(s)	151, 330, 498, 503, 508, 797
MboII	GAAGA	2 cut(s)	176, 767
MfeI	CAATTG	1 cut(s)	672
MflI	RGATCY	2 cut(s)	508, 797
MhlI	GDGCHC	2 cut(s)	492, 619
MluCI	AATT	3 cut(s)	102, 535, 672
MnlI	CCTC	2 cut(s)	35, 224
MseI	TTAA	2 cut(s)	105, 534
MslI	CAYNNNNRTG	5 cut(s)	161, 478, 518, 654, 693
MspR9I	CCNGG	1 cut(s)	122
MunI	CAATTG	1 cut(s)	672
MvaI	CCWGG	1 cut(s)	122
MwoI	GCNNNNNNNGC	1 cut(s)	322
NdeII	GATC	6 cut(s)	151, 330, 498, 503, 508, 797
NlaIII	CATG	6 cut(s)	160, 166, 182, 193, 483, 523
NlaIV	GGNNCC	1 cut(s)	768
NmuCI	GTSAC	1 cut(s)	128
NsbI	TGCGCA	1 cut(s)	257
NspI	RCATGY	2 cut(s)	160, 483
PciI	ACATGT	2 cut(s)	156, 479
PciSI	GCTCTTC	1 cut(s)	189
Ple19I	CGATCG	1 cut(s)	501
PscI	ACATGT	2 cut(s)	156, 479
PshBI	ATTAAT	1 cut(s)	105
Psp1406I	AACGTT	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	120
PspGI	CCWGG	1 cut(s)	120
PspN4I	GGNNCC	1 cut(s)	768
PsuI	RGATCY	2 cut(s)	508, 797
PvuI	CGATCG	1 cut(s)	501
RsaI	GTAC	2 cut(s)	161, 782
RsaNI	GTAC	2 cut(s)	160, 781
RseI	CAYNNNNRTG	5 cut(s)	161, 478, 518, 654, 693
SapI	GCTCTTC	1 cut(s)	189
SaqAI	TTAA	2 cut(s)	105, 534
Sau3AI	GATC	6 cut(s)	151, 330, 498, 503, 508, 797
ScrFI	CCNGG	1 cut(s)	122
SduI	GDGCHC	2 cut(s)	492, 619
SetI	ASST	9 cut(s)	12, 216, 228, 289, 301, 360, 379, 411, 644
SfaNI	GCATC	1 cut(s)	379
SmiMI	CAYNNNNRTG	5 cut(s)	161, 478, 518, 654, 693
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
Sse9I	AATT	3 cut(s)	102, 535, 672
SspMI	CTAG	3 cut(s)	317, 437, 717
StyD4I	CCNGG	1 cut(s)	120
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	3 cut(s)	88, 253, 760
TaiI	ACGT	1 cut(s)	411
TaqI	TCGA	2 cut(s)	497, 632
TasI	AATT	3 cut(s)	102, 535, 672
TatI	WGTACW	1 cut(s)	159
Tru1I	TTAA	2 cut(s)	105, 534
Tru9I	TTAA	2 cut(s)	105, 534
TscAI	CASTG	2 cut(s)	91, 258
TseFI	GTSAC	1 cut(s)	128
Tsp45I	GTSAC	1 cut(s)	128
TspDTI	ATGAA	4 cut(s)	179, 434, 536, 675
TspGWI	ACGGA	3 cut(s)	323, 324, 666
TspRI	CASTG	2 cut(s)	91, 258
VspI	ATTAAT	1 cut(s)	105
XbaI	TCTAGA	1 cut(s)	436
XceI	RCATGY	2 cut(s)	160, 483
XcmI	CCANNNNNNNNNTGG	1 cut(s)	695
XspI	CTAG	3 cut(s)	317, 437, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.