Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Forward (+)

12382269 .. 12395638

Gene Structure 13370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006985

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGCAAAGCTGGGGCTTGCTCTACTTGTACATGGAACTTGGTTTCGGGATCAGTGGATCAATCGGAGTGAGTGATTCTCGACGAAAATCACGTCGAGAAACGGTTGTGGCACAAAAACTGAAGGAGGCGGAGATCACCGAGCAGGATTCGCTTCTTCTGACGAAGAACCTGCTTCGCATCGCTATATTCAATATTAGTTACATCAGAATGAAGATTAAAAAGCTAATGCCAACGGATGCAGAGTCTCGTGTATACGACGCCTTGCAGAAGAAGTACCTGAAAACGCTTTTGTTCTGTGTGTTTTCATTCAGTTACTCAAATTCCGAGAGCCAGGAGGTTTCAATGAATATCAGTCGCTCTGGAAACAAGAATCATGGTGGAACATTCAAGTGTGACTCCACAGCAGAAATTACCCCCAACCAGATGAGAAGTTCTGCTTGTAAAATGGTCCGCACACTGGTTCAACTGATGAGAACTCTGGATAGGACACCTGAAGAGCGCACCATACTGATGAAACTCCTATATTATGATGATGTGACGCCAGTAGATTATGAGCCTCCATTCTTCAGATGTTGCACAGAAGAAGAAACTCATAACCTATGGACAAAGAATCCTTTGAAACTGGAGGTCGGGAATGTGAACAGCAAGCATCTTGTAAAGAGCGTGCTTGATCCCTGTGAGGATGAAAATGATGGTAATCAAGATGATGAAGTGAGCTTAGGAGCTGACTCCATGCAAAGGGATGACTCTTCTGAAACTGACAGTGAGGTTAACCAATCACAAGAGGATCGATATATAGTTGCCCCCATAGCTAAGCGACAACCACAGGAGGATAACACTATAGATGATACTCAGGATCCAGAGGAAGATGAACAACAATTTTCTAGGATAAAGGACTGGATCAGTAGCCGCCATCTTGACAATGTTGAAGTTACTGATGTTCTCTCGAATTTCCCAGACATCTCAGTGGTACGGATTTCAACTGTTCAATTCTCTGCTGGAATTTGTGCCAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

340

Amino Acids

38.75

Weight (kDa)

4.91

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	83 - 217	1.1e-29	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	177
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	3 cut(s)	128, 451, 910
AclWI	GGATC	7 cut(s)	56, 64, 665, 795, 851, 864, 908
AcsI	RAATTY	3 cut(s)	319, 949, 1002
AcuI	CTGAAG	3 cut(s)	140, 513, 550
AcyI	GRCGYC	2 cut(s)	258, 539
AfaI	GTAC	3 cut(s)	29, 275, 972
AfiI	CCNNNNNNNGG	2 cut(s)	457, 738
AgsI	TTSAA	8 cut(s)	190, 342, 388, 464, 619, 929, 981, 989
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	5 cut(s)	9, 223, 717, 725, 812
AluI	AGCT	5 cut(s)	9, 223, 717, 725, 812
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	7 cut(s)	56, 64, 665, 795, 851, 864, 908
ApoI	RAATTY	3 cut(s)	319, 949, 1002
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AspLEI	GCGC	1 cut(s)	501
AspS9I	GGNCC	1 cut(s)	448
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	448
BamHI	GGATCC	1 cut(s)	856
BauI	CACGAG	1 cut(s)	246
BccI	CCATC	2 cut(s)	686, 921
BcgI	CGANNNNNNTGC	2 cut(s)	151, 185
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	885
BfmI	CTRYAG	1 cut(s)	840
BfuAI	ACCTGC	1 cut(s)	177
BisI	GCNGC	1 cut(s)	910
BlpI	GCTNAGC	1 cut(s)	813
BlsI	GCNGC	1 cut(s)	911
Bme1390I	CCNGG	1 cut(s)	332
Bme18I	GGWCC	1 cut(s)	448
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	448
BmiI	GGNNCC	1 cut(s)	858
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	186, 226, 658
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
BpmI	CTGGAG	1 cut(s)	644
Bpu10I	CCTNAGC	1 cut(s)	718
Bpu1102I	GCTNAGC	1 cut(s)	813
Bsa29I	ATCGAT	1 cut(s)	790
BsaBI	GATNNNNATC	1 cut(s)	696
BsaHI	GRCGYC	2 cut(s)	258, 539
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 738
Bse1I	ACTGG	4 cut(s)	462, 542, 627, 902
Bse8I	GATNNNNATC	1 cut(s)	696
BseBI	CCWGG	1 cut(s)	332
BseCI	ATCGAT	1 cut(s)	790
BseGI	GGATG	3 cut(s)	241, 688, 748
BseJI	GATNNNNATC	1 cut(s)	696
BseLI	CCNNNNNNNGG	2 cut(s)	457, 738
BseMII	CTCAG	2 cut(s)	866, 978
BseNI	ACTGG	4 cut(s)	462, 542, 627, 902
BseYI	CCCAGC	1 cut(s)	9
BshVI	ATCGAT	1 cut(s)	790
BslI	CCNNNNNNNGG	2 cut(s)	457, 738
BsmAI	GTCTC	1 cut(s)	249
Bsp1407I	TGTACA	1 cut(s)	27
Bsp143I	GATC	7 cut(s)	48, 56, 132, 670, 787, 856, 900
Bsp1720I	GCTNAGC	1 cut(s)	813
BspACI	CCGC	3 cut(s)	128, 451, 910
BspCNI	CTCAG	2 cut(s)	865, 977
BspDI	ATCGAT	1 cut(s)	790
BspLI	GGNNCC	1 cut(s)	858
BspMI	ACCTGC	1 cut(s)	177
BspPI	GGATC	7 cut(s)	56, 64, 665, 795, 851, 864, 908
BspQI	GCTCTTC	1 cut(s)	489
BsrGI	TGTACA	1 cut(s)	27
BsrI	ACTGG	4 cut(s)	462, 542, 627, 902
BssMI	GATC	7 cut(s)	48, 56, 132, 670, 787, 856, 900
BssNAI	GTATAC	1 cut(s)	253
BssNI	GRCGYC	2 cut(s)	258, 539
BssSI	CACGAG	1 cut(s)	246
Bst1107I	GTATAC	1 cut(s)	253
Bst2BI	CACGAG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	3 cut(s)	103, 764, 985
Bst6I	CTCTTC	2 cut(s)	489, 754
BstACI	GRCGYC	2 cut(s)	258, 539
BstAUI	TGTACA	1 cut(s)	27
BstC8I	GCNNGC	3 cut(s)	17, 647, 665
BstDEI	CTNAG	4 cut(s)	718, 813, 852, 964
BstF5I	GGATG	3 cut(s)	241, 688, 748
BstHHI	GCGC	1 cut(s)	501
BstKTI	GATC	7 cut(s)	51, 59, 135, 673, 790, 859, 903
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	7 cut(s)	48, 56, 132, 670, 787, 856, 900
BstMWI	GCNNNNNNNGC	2 cut(s)	148, 809
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	840
BstX2I	RGATCY	1 cut(s)	856
BstYI	RGATCY	1 cut(s)	856
BstZ17I	GTATAC	1 cut(s)	253
Bsu15I	ATCGAT	1 cut(s)	790
BsuTUI	ATCGAT	1 cut(s)	790
BtgZI	GCGATG	1 cut(s)	163
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	241, 688, 748
BtsIMutI	CAGTG	4 cut(s)	58, 455, 769, 972
BveI	ACCTGC	1 cut(s)	177
Cac8I	GCNNGC	3 cut(s)	17, 647, 665
CfoI	GCGC	1 cut(s)	501
Cfr13I	GGNCC	1 cut(s)	448
ClaI	ATCGAT	1 cut(s)	790
CseI	GACGC	2 cut(s)	266, 547
Csp6I	GTAC	3 cut(s)	28, 274, 971
CviAII	CATG	3 cut(s)	31, 374, 733
CviJI	RGCY	9 cut(s)	9, 15, 223, 330, 556, 717, 725, 812, 909
CviKI_1	RGCY	9 cut(s)	9, 15, 223, 330, 556, 717, 725, 812, 909
CviQI	GTAC	3 cut(s)	28, 274, 971
DdeI	CTNAG	4 cut(s)	718, 813, 852, 964
DpnI	GATC	7 cut(s)	50, 58, 134, 672, 789, 858, 902
DpnII	GATC	7 cut(s)	48, 56, 132, 670, 787, 856, 900
Eam1104I	CTCTTC	2 cut(s)	489, 754
EarI	CTCTTC	2 cut(s)	489, 754
EciI	GGCGGA	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	448
Eco57I	CTGAAG	3 cut(s)	140, 513, 550
EcoRII	CCWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	34, 377, 736
FalI	AAGNNNNNCTT	2 cut(s)	421, 453
FatI	CATG	3 cut(s)	30, 373, 732
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	1 cut(s)	910
FokI	GGATG	3 cut(s)	248, 695, 755
Fsp4HI	GCNGC	1 cut(s)	910
FspBI	CTAG	1 cut(s)	885
GlaI	GCGC	1 cut(s)	500
GluI	GCNGC	1 cut(s)	910
GsaI	CCCAGC	1 cut(s)	13
GsuI	CTGGAG	1 cut(s)	644
HgaI	GACGC	2 cut(s)	266, 547
HhaI	GCGC	1 cut(s)	501
Hin1I	GRCGYC	2 cut(s)	258, 539
Hin1II	CATG	3 cut(s)	34, 377, 736
Hin6I	GCGC	1 cut(s)	499
HinP1I	GCGC	1 cut(s)	499
HincII	GTYRAC	1 cut(s)	772
HindII	GTYRAC	1 cut(s)	772
HinfI	GANTC	8 cut(s)	74, 146, 242, 370, 395, 610, 728, 746
HpaI	GTTAAC	1 cut(s)	772
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	3 cut(s)	253, 640, 772
Hpy188I	TCNGA	6 cut(s)	65, 159, 206, 325, 569, 754
Hpy8I	GTNNAC	3 cut(s)	253, 640, 772
Hpy99I	CGWCG	3 cut(s)	84, 96, 260
HpyAV	CCTTC	1 cut(s)	115
HpyCH4III	ACNGT	3 cut(s)	103, 764, 985
HpyCH4IV	ACGT	1 cut(s)	91
HpyCH4V	TGCA	5 cut(s)	4, 239, 265, 576, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	148, 809
HpyF3I	CTNAG	4 cut(s)	718, 813, 852, 964
HpySE526I	ACGT	1 cut(s)	91
Hsp92I	GRCGYC	2 cut(s)	258, 539
Hsp92II	CATG	3 cut(s)	34, 377, 736
HspAI	GCGC	1 cut(s)	499
KspAI	GTTAAC	1 cut(s)	772
Kzo9I	GATC	7 cut(s)	48, 56, 132, 670, 787, 856, 900
LguI	GCTCTTC	1 cut(s)	489
LmnI	GCTCC	1 cut(s)	722
LweI	GCATC	3 cut(s)	186, 226, 658
MaeI	CTAG	1 cut(s)	885
MaeII	ACGT	1 cut(s)	91
MaeIII	GTNAC	5 cut(s)	197, 311, 392, 535, 931
MalI	GATC	7 cut(s)	50, 58, 134, 672, 789, 858, 902
MboI	GATC	7 cut(s)	48, 56, 132, 670, 787, 856, 900
MflI	RGATCY	1 cut(s)	856
MluCI	AATT	6 cut(s)	319, 408, 878, 949, 989, 1002
MlyI	GAGTC	4 cut(s)	251, 389, 722, 740
MnlI	CCTC	9 cut(s)	118, 328, 567, 619, 673, 760, 778, 823, 856
MseI	TTAA	2 cut(s)	216, 771
MslI	CAYNNNNRTG	4 cut(s)	206, 388, 509, 965
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
MwoI	GCNNNNNNNGC	2 cut(s)	148, 809
NdeII	GATC	7 cut(s)	48, 56, 132, 670, 787, 856, 900
NlaIII	CATG	3 cut(s)	34, 377, 736
NlaIV	GGNNCC	1 cut(s)	858
NmuCI	GTSAC	2 cut(s)	392, 535
PciSI	GCTCTTC	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	88
PfeI	GAWTC	4 cut(s)	74, 146, 370, 610
PkrI	GCNGC	1 cut(s)	911
PleI	GAGTC	4 cut(s)	250, 389, 722, 740
PpsI	GAGTC	4 cut(s)	250, 389, 722, 740
Psp6I	CCWGG	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	9
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	858
PspPI	GGNCC	1 cut(s)	448
PsuI	RGATCY	1 cut(s)	856
RsaI	GTAC	3 cut(s)	29, 275, 972
RsaNI	GTAC	3 cut(s)	28, 274, 971
RseI	CAYNNNNRTG	4 cut(s)	206, 388, 509, 965
SapI	GCTCTTC	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	216, 771
SatI	GCNGC	1 cut(s)	910
Sau3AI	GATC	7 cut(s)	48, 56, 132, 670, 787, 856, 900
Sau96I	GGNCC	1 cut(s)	448
SchI	GAGTC	4 cut(s)	251, 389, 722, 740
ScrFI	CCNGG	1 cut(s)	332
SfaNI	GCATC	3 cut(s)	186, 226, 658
SfcI	CTRYAG	1 cut(s)	840
SinI	GGWCC	1 cut(s)	448
SmiMI	CAYNNNNRTG	4 cut(s)	206, 388, 509, 965
Sse9I	AATT	6 cut(s)	319, 408, 878, 949, 989, 1002
SsiI	CCGC	3 cut(s)	128, 451, 910
SspI	AATATT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	885
StyD4I	CCNGG	1 cut(s)	330
TaaI	ACNGT	3 cut(s)	103, 764, 985
TaiI	ACGT	1 cut(s)	94
TaqI	TCGA	4 cut(s)	79, 94, 790, 947
TasI	AATT	6 cut(s)	319, 408, 878, 949, 989, 1002
TatI	WGTACW	1 cut(s)	27
TauI	GCSGC	1 cut(s)	912
TfiI	GAWTC	4 cut(s)	74, 146, 370, 610
Tru1I	TTAA	2 cut(s)	216, 771
Tru9I	TTAA	2 cut(s)	216, 771
TscAI	CASTG	4 cut(s)	58, 462, 769, 972
TseFI	GTSAC	2 cut(s)	392, 535
Tsp45I	GTSAC	2 cut(s)	392, 535
TspDTI	ATGAA	7 cut(s)	224, 294, 359, 527, 699, 723, 885
TspGWI	ACGGA	2 cut(s)	248, 988
TspRI	CASTG	4 cut(s)	58, 462, 769, 972
VpaK11BI	GGWCC	1 cut(s)	448
XapI	RAATTY	3 cut(s)	319, 949, 1002
XmiI	GTMKAC	1 cut(s)	252
XspI	CTAG	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.