Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Forward (+)

52706025 .. 52708092

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG226000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGAGTTGTTGTTTGTGATGATGGTATATATGCAAACTTATTTTCTGCAAATCTTTTTGAAATGCATTCTATACTACTCTCTGACTATGTACAATGAACAGGATGTGGAGAACATTGAGCCCCAAAGCATGTCGAATCATCAAGATTTTTATCCAATTGCTAGTAACTACAGAGATACATCCACATGTGGTGCACTCCACTCCATTGGATCAGATATGACACGCGTGAGAATAAGAGCTAATTCAAATGAACACAGTCGAATGAAGAGTGAGCAGACTACTTCAATGAGAAAGGAGCATGGAAACACCCCCACCATCCAGGCTCAGAGAGAGTTATGCACCTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

115

Amino Acids

13.58

Weight (kDa)

6.04

Isoelectric Point (pI)

44.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AclWI	GGATC	1 cut(s)	217
AfaI	GTAC	1 cut(s)	92
AflIII	ACRYGT	2 cut(s)	185, 223
AgsI	TTSAA	3 cut(s)	61, 246, 285
AjnI	CCWGG	2 cut(s)	318, 341
AluBI	AGCT	1 cut(s)	239
AluI	AGCT	1 cut(s)	239
Alw21I	GWGCWC	1 cut(s)	196
Alw44I	GTGCAC	1 cut(s)	192
AlwI	GGATC	1 cut(s)	217
ApaLI	GTGCAC	1 cut(s)	192
BaeGI	GKGCMC	1 cut(s)	196
BanII	GRGCYC	1 cut(s)	123
Bbv12I	GWGCWC	1 cut(s)	196
BccI	CCATC	2 cut(s)	16, 323
BciT130I	CCWGG	2 cut(s)	320, 343
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	169
Bme1390I	CCNGG	2 cut(s)	320, 343
BmrFI	CCNGG	2 cut(s)	320, 343
BsaBI	GATNNNNATC	1 cut(s)	150
BsaXI	ACNNNNNCTCC	1 cut(s)	26
Bse8I	GATNNNNATC	1 cut(s)	150
BseBI	CCWGG	2 cut(s)	320, 343
BseGI	GGATG	3 cut(s)	109, 179, 315
BseJI	GATNNNNATC	1 cut(s)	150
BseMII	CTCAG	1 cut(s)	338
BseSI	GKGCMC	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	225
BsiHKAI	GWGCWC	1 cut(s)	196
BsmI	GAATGC	1 cut(s)	66
Bsp1286I	GDGCHC	2 cut(s)	123, 196
Bsp1407I	TGTACA	1 cut(s)	90
Bsp143I	GATC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	337
BspFNI	CGCG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	217
BsrGI	TGTACA	1 cut(s)	90
BssMI	GATC	1 cut(s)	209
Bst2UI	CCWGG	2 cut(s)	320, 343
Bst4CI	ACNGT	1 cut(s)	257
Bst6I	CTCTTC	1 cut(s)	260
BstAUI	TGTACA	1 cut(s)	90
BstDEI	CTNAG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	109, 179, 315
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	1 cut(s)	212
BstMBI	GATC	1 cut(s)	209
BstNI	CCWGG	2 cut(s)	320, 343
BstNSI	RCATGY	2 cut(s)	133, 189
BstSCI	CCNGG	2 cut(s)	318, 341
BstSFI	CTRYAG	1 cut(s)	169
BstSLI	GKGCMC	1 cut(s)	196
BstUI	CGCG	1 cut(s)	225
BstXI	CCANNNNNNTGG	1 cut(s)	206
BtsCI	GGATG	3 cut(s)	109, 179, 315
CsiI	ACCWGGT	1 cut(s)	341
Csp6I	GTAC	1 cut(s)	91
CviAII	CATG	3 cut(s)	130, 186, 299
CviJI	RGCY	3 cut(s)	121, 239, 323
CviKI_1	RGCY	3 cut(s)	121, 239, 323
CviQI	GTAC	1 cut(s)	91
DdeI	CTNAG	1 cut(s)	324
DpnI	GATC	1 cut(s)	211
DpnII	GATC	1 cut(s)	209
Eam1104I	CTCTTC	1 cut(s)	260
EarI	CTCTTC	1 cut(s)	260
Eco24I	GRGCYC	1 cut(s)	123
EcoRII	CCWGG	2 cut(s)	318, 341
EcoT22I	ATGCAT	1 cut(s)	68
EcoT38I	GRGCYC	1 cut(s)	123
FaeI	CATG	3 cut(s)	133, 189, 302
FatI	CATG	3 cut(s)	129, 185, 298
FokI	GGATG	3 cut(s)	116, 166, 302
FriOI	GRGCYC	1 cut(s)	123
FspBI	CTAG	1 cut(s)	162
Hin1II	CATG	3 cut(s)	133, 189, 302
HinfI	GANTC	1 cut(s)	136
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	3 cut(s)	84, 214, 327
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	1 cut(s)	194
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4V	TGCA	5 cut(s)	34, 49, 66, 194, 339
HpyF3I	CTNAG	1 cut(s)	324
Hsp92II	CATG	3 cut(s)	133, 189, 302
Kzo9I	GATC	1 cut(s)	209
LmnI	GCTCC	1 cut(s)	295
LpnPI	CCDG	4 cut(s)	86, 305, 328, 332
MabI	ACCWGGT	1 cut(s)	341
MaeI	CTAG	1 cut(s)	162
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	1 cut(s)	211
MboI	GATC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	277
MfeI	CAATTG	1 cut(s)	156
MhlI	GDGCHC	2 cut(s)	123, 196
MluCI	AATT	2 cut(s)	156, 241
MluI	ACGCGT	1 cut(s)	223
Mph1103I	ATGCAT	1 cut(s)	68
MslI	CAYNNNNRTG	1 cut(s)	184
MspR9I	CCNGG	2 cut(s)	320, 343
MunI	CAATTG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	66
MvaI	CCWGG	2 cut(s)	320, 343
MvnI	CGCG	1 cut(s)	225
NdeII	GATC	1 cut(s)	209
NlaIII	CATG	3 cut(s)	133, 189, 302
NsiI	ATGCAT	1 cut(s)	68
NspI	RCATGY	2 cut(s)	133, 189
PciI	ACATGT	1 cut(s)	185
PctI	GAATGC	1 cut(s)	66
PfeI	GAWTC	1 cut(s)	136
PscI	ACATGT	1 cut(s)	185
Psp6I	CCWGG	2 cut(s)	318, 341
PspGI	CCWGG	2 cut(s)	318, 341
RsaI	GTAC	1 cut(s)	92
RsaNI	GTAC	1 cut(s)	91
RseI	CAYNNNNRTG	1 cut(s)	184
Sau3AI	GATC	1 cut(s)	209
ScrFI	CCNGG	2 cut(s)	320, 343
SduI	GDGCHC	2 cut(s)	123, 196
SetI	ASST	2 cut(s)	241, 344
SexAI	ACCWGGT	1 cut(s)	341
SfcI	CTRYAG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	184
Sse9I	AATT	2 cut(s)	156, 241
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	318, 341
TaaI	ACNGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	134, 259
TasI	AATT	2 cut(s)	156, 241
TatI	WGTACW	1 cut(s)	90
TfiI	GAWTC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	111, 264, 278
VneI	GTGCAC	1 cut(s)	192
XceI	RCATGY	2 cut(s)	133, 189
XspI	CTAG	1 cut(s)	162
Zsp2I	ATGCAT	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.