Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Reverse (-)

58371028 .. 58376293

Gene Structure 5266 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG321400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCAGGGCTGGAGTTGCCCTACTCATGCAAAGCTGGGGCTTGCTCGACTTGTACATGGAAGTTGGTTTCGGATCCGGCTCGGGATCAGTGGATCAATCCGAGTGAGTGATTCTCGACGAAAACCACGTCGAGAAACGCCAGTAGATTATGAGCCTCCATTCTTCAGATGTTGCACAGAAGAAGAAACTCATAACCCATGGACAAAGAATCCTTTGAAACTGGAGGTCGGGAATGTGAACAGCAAGCATCTTGTCTTAGCTCTCAAGGTAAAGAGCGTGCTTGATCCCTGTGAGGATGAAAATGATGATAATCAAGATGATGAAGTGAGCTTAGGAGCTCACTCCATGCAAAGGGATGACTCTTCTGAAACTGACAGTGAGGTTAACCAATCACAAGAGGATCGATATATAGTTGCCCCCATAGCTAAGCGACAACCACAGGAGGATAACAGCATACCTCAGGAAGTTAACAGTATGGATGATGAAGCTACAGATGATACTCAGGATCCAGAGGAAGACGAACAGCAATTTTCTAGGATAAAGGACTGGATTATTAGCCGCCATCTTGACAATGTTGAAGTTACTGATATTCTCTCGAATTTCCCAGACATCTCAGTGGTTCTGACTGAAGGTAAACTGAAGAATGCACTTATACCTGCTGCTAGTAACTACAGAGACACATCCACATGCGGTGCGCTCCACTCCATTGGATCAGATCTGACACGCATGAGAATAAGGGCTAATTCAAATGAACAGAGTCCAATGAAGAGTGAGCAGACTACTTCAATAAGAAAGGAGCATGGAAACTCCCCCACAGGCCGGGCTCAGCCAGAAATTTCAAGAGAGAGTTTTGCACCTGGTAATGATGAAAACAGAGCAAATTGCAACACAAACTACTGTGATGAAGATGAGAGAGTGATGTGCAGTAGTAGGTCGACGCAAGACAAGCGTTCCAGGAAAACAAGCATGGTCAAGGAGCCTATTCTTCAGTACACAAAGCGCCAGAAATCTCAAGCCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

340

Amino Acids

38.55

Weight (kDa)

5.21

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HORMA	PF02301	45 - 83	5.8e-06	HORMA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	664
AccI	GTMKAC	1 cut(s)	935
AciI	CCGC	2 cut(s)	559, 690
AclWI	GGATC	9 cut(s)	67, 80, 92, 100, 278, 408, 500, 513, 718
AcsI	RAATTY	2 cut(s)	598, 834
AcuI	CTGAAG	4 cut(s)	148, 648, 659, 971
AfaI	GTAC	2 cut(s)	54, 992
AfiI	CCNNNNNNNGG	2 cut(s)	351, 819
AgsI	TTSAA	5 cut(s)	217, 578, 747, 786, 840
AjiI	CACGTC	1 cut(s)	128
AjnI	CCWGG	2 cut(s)	856, 953
AluBI	AGCT	6 cut(s)	34, 260, 330, 338, 425, 488
AluI	AGCT	6 cut(s)	34, 260, 330, 338, 425, 488
Alw21I	GWGCWC	1 cut(s)	340
Alw26I	GTCTC	1 cut(s)	669
AlwI	GGATC	9 cut(s)	67, 80, 92, 100, 278, 408, 500, 513, 718
Ama87I	CYCGRG	1 cut(s)	80
AoxI	GGCC	1 cut(s)	817
ApeKI	GCWGC	1 cut(s)	659
ApoI	RAATTY	2 cut(s)	598, 834
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
AspLEI	GCGC	2 cut(s)	697, 1002
AsuC2I	CCSGG	1 cut(s)	821
AvaI	CYCGRG	1 cut(s)	80
AxyI	CCTNAGG	1 cut(s)	459
BamHI	GGATCC	2 cut(s)	72, 505
BanII	GRGCYC	2 cut(s)	340, 826
BbsI	GAAGAC	1 cut(s)	522
Bbv12I	GWGCWC	1 cut(s)	340
BbvI	GCAGC	1 cut(s)	646
BccI	CCATC	1 cut(s)	570
BciT130I	CCWGG	2 cut(s)	858, 955
BcnI	CCSGG	1 cut(s)	821
BcoDI	GTCTC	1 cut(s)	669
BfaI	CTAG	2 cut(s)	534, 663
BfmI	CTRYAG	2 cut(s)	489, 670
BfoI	RGCGCY	1 cut(s)	1003
BfuAI	ACCTGC	1 cut(s)	664
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	2 cut(s)	559, 660
BlpI	GCTNAGC	2 cut(s)	426, 825
BlsI	GCNGC	2 cut(s)	560, 661
Bme1390I	CCNGG	3 cut(s)	821, 858, 955
BmeT110I	CYCGRG	1 cut(s)	80
BmgBI	CACGTC	1 cut(s)	128
BmiI	GGNNCC	3 cut(s)	74, 507, 978
BmrFI	CCNGG	3 cut(s)	821, 858, 955
BmsI	GCATC	1 cut(s)	256
BpiI	GAAGAC	1 cut(s)	522
BplI	GAGNNNNNCTC	2 cut(s)	97, 129
BpmI	CTGGAG	2 cut(s)	31, 242
Bpu10I	CCTNAGC	1 cut(s)	331
Bpu1102I	GCTNAGC	2 cut(s)	426, 825
BpuEI	CTTGAG	2 cut(s)	248, 996
BpuMI	CCSGG	1 cut(s)	821
Bsa29I	ATCGAT	1 cut(s)	403
BsaBI	GATNNNNATC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	197
Bsc4I	CCNNNNNNNGG	2 cut(s)	351, 819
Bse1I	ACTGG	3 cut(s)	140, 225, 551
Bse21I	CCTNAGG	1 cut(s)	459
Bse8I	GATNNNNATC	1 cut(s)	309
BseBI	CCWGG	2 cut(s)	858, 955
BseCI	ATCGAT	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	4 cut(s)	301, 361, 484, 680
BseJI	GATNNNNATC	1 cut(s)	309
BseLI	CCNNNNNNNGG	2 cut(s)	351, 819
BseMII	CTCAG	4 cut(s)	473, 515, 627, 839
BseNI	ACTGG	3 cut(s)	140, 225, 551
BseXI	GCAGC	1 cut(s)	646
BseYI	CCCAGC	1 cut(s)	34
BsgI	GTGCAG	1 cut(s)	943
BshFI	GGCC	1 cut(s)	819
BshVI	ATCGAT	1 cut(s)	403
BsiHKAI	GWGCWC	1 cut(s)	340
BsiHKCI	CYCGRG	1 cut(s)	80
BsiSI	CCGG	2 cut(s)	76, 820
BslI	CCNNNNNNNGG	2 cut(s)	351, 819
BsmAI	GTCTC	1 cut(s)	669
BsmI	GAATGC	1 cut(s)	649
BsnI	GGCC	1 cut(s)	819
BsoBI	CYCGRG	1 cut(s)	80
Bsp1286I	GDGCHC	2 cut(s)	340, 826
Bsp1407I	TGTACA	1 cut(s)	52
Bsp143I	GATC	8 cut(s)	72, 84, 92, 283, 400, 505, 710, 715
Bsp1720I	GCTNAGC	2 cut(s)	426, 825
Bsp19I	CCATGG	1 cut(s)	197
BspACI	CCGC	2 cut(s)	559, 690
BspANI	GGCC	1 cut(s)	819
BspCNI	CTCAG	4 cut(s)	472, 514, 626, 838
BspDI	ATCGAT	1 cut(s)	403
BspLI	GGNNCC	3 cut(s)	74, 507, 978
BspMI	ACCTGC	1 cut(s)	664
BspPI	GGATC	9 cut(s)	67, 80, 92, 100, 278, 408, 500, 513, 718
BsrGI	TGTACA	1 cut(s)	52
BsrI	ACTGG	3 cut(s)	140, 225, 551
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	8 cut(s)	72, 84, 92, 283, 400, 505, 710, 715
BssT1I	CCWWGG	1 cut(s)	197
Bst2UI	CCWGG	2 cut(s)	858, 955
Bst4CI	ACNGT	3 cut(s)	377, 473, 899
Bst6I	CTCTTC	2 cut(s)	367, 761
BstAUI	TGTACA	1 cut(s)	52
BstC8I	GCNNGC	3 cut(s)	42, 245, 278
BstDEI	CTNAG	7 cut(s)	256, 331, 426, 459, 501, 613, 825
BstDSI	CCRYGG	1 cut(s)	197
BstF5I	GGATG	4 cut(s)	301, 361, 484, 680
BstH2I	RGCGCY	1 cut(s)	1003
BstHHI	GCGC	2 cut(s)	697, 1002
BstKTI	GATC	8 cut(s)	75, 87, 95, 286, 403, 508, 713, 718
BstMAI	GTCTC	1 cut(s)	669
BstMBI	GATC	8 cut(s)	72, 84, 92, 283, 400, 505, 710, 715
BstMWI	GCNNNNNNNGC	3 cut(s)	15, 422, 946
BstNI	CCWGG	2 cut(s)	858, 955
BstNSI	RCATGY	1 cut(s)	690
BstSCI	CCNGG	3 cut(s)	819, 856, 953
BstSFI	CTRYAG	2 cut(s)	489, 670
BstV1I	GCAGC	1 cut(s)	646
BstV2I	GAAGAC	1 cut(s)	522
BstX2I	RGATCY	3 cut(s)	72, 505, 715
BstXI	CCANNNNNNTGG	1 cut(s)	707
BstYI	RGATCY	3 cut(s)	72, 505, 715
Bsu15I	ATCGAT	1 cut(s)	403
Bsu36I	CCTNAGG	1 cut(s)	459
BsuRI	GGCC	1 cut(s)	819
BsuTUI	ATCGAT	1 cut(s)	403
BtgI	CCRYGG	1 cut(s)	197
BtrI	CACGTC	1 cut(s)	128
BtsCI	GGATG	4 cut(s)	301, 361, 484, 680
BtsIMutI	CAGTG	3 cut(s)	94, 382, 621
BveI	ACCTGC	1 cut(s)	664
Cac8I	GCNNGC	3 cut(s)	42, 245, 278
CfoI	GCGC	2 cut(s)	697, 1002
ClaI	ATCGAT	1 cut(s)	403
CseI	GACGC	1 cut(s)	946
CsiI	ACCWGGT	1 cut(s)	856
Csp6I	GTAC	2 cut(s)	53, 991
CviAII	CATG	8 cut(s)	26, 56, 198, 346, 687, 727, 800, 967
CviQI	GTAC	2 cut(s)	53, 991
DdeI	CTNAG	7 cut(s)	256, 331, 426, 459, 501, 613, 825
DpnI	GATC	8 cut(s)	74, 86, 94, 285, 402, 507, 712, 717
DpnII	GATC	8 cut(s)	72, 84, 92, 283, 400, 505, 710, 715
Eam1104I	CTCTTC	2 cut(s)	367, 761
EarI	CTCTTC	2 cut(s)	367, 761
Ecl136II	GAGCTC	1 cut(s)	338
Eco130I	CCWWGG	1 cut(s)	197
Eco24I	GRGCYC	2 cut(s)	340, 826
Eco53kI	GAGCTC	1 cut(s)	338
Eco57I	CTGAAG	4 cut(s)	148, 648, 659, 971
Eco81I	CCTNAGG	1 cut(s)	459
Eco88I	CYCGRG	1 cut(s)	80
EcoICRI	GAGCTC	1 cut(s)	338
EcoRII	CCWGG	2 cut(s)	856, 953
EcoT14I	CCWWGG	1 cut(s)	197
EcoT38I	GRGCYC	2 cut(s)	340, 826
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	8 cut(s)	29, 59, 201, 349, 690, 730, 803, 970
FatI	CATG	8 cut(s)	25, 55, 197, 345, 686, 726, 799, 966
FblI	GTMKAC	1 cut(s)	935
Fnu4HI	GCNGC	2 cut(s)	559, 660
FokI	GGATG	4 cut(s)	308, 368, 491, 667
FriOI	GRGCYC	2 cut(s)	340, 826
Fsp4HI	GCNGC	2 cut(s)	559, 660
FspBI	CTAG	2 cut(s)	534, 663
GlaI	GCGC	2 cut(s)	696, 1001
GluI	GCNGC	2 cut(s)	559, 660
GsaI	CCCAGC	1 cut(s)	38
GsuI	CTGGAG	2 cut(s)	31, 242
HaeII	RGCGCY	1 cut(s)	1003
HaeIII	GGCC	1 cut(s)	819
HapII	CCGG	2 cut(s)	76, 820
HgaI	GACGC	1 cut(s)	946
HhaI	GCGC	2 cut(s)	697, 1002
Hin1II	CATG	8 cut(s)	29, 59, 201, 349, 690, 730, 803, 970
Hin6I	GCGC	2 cut(s)	695, 1000
HinP1I	GCGC	2 cut(s)	695, 1000
HincII	GTYRAC	3 cut(s)	385, 469, 936
HindII	GTYRAC	3 cut(s)	385, 469, 936
HinfI	GANTC	4 cut(s)	110, 208, 359, 757
HpaI	GTTAAC	2 cut(s)	385, 469
HpaII	CCGG	2 cut(s)	76, 820
Hpy166II	GTNNAC	6 cut(s)	238, 385, 469, 635, 936, 993
Hpy188I	TCNGA	8 cut(s)	72, 101, 167, 367, 624, 715, 720, 1022
Hpy8I	GTNNAC	6 cut(s)	238, 385, 469, 635, 936, 993
Hpy99I	CGWCG	3 cut(s)	120, 132, 940
HpyAV	CCTTC	1 cut(s)	623
HpyCH4III	ACNGT	3 cut(s)	377, 473, 899
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	8 cut(s)	4, 29, 174, 349, 647, 854, 885, 924
HpyF10VI	GCNNNNNNNGC	3 cut(s)	15, 422, 946
HpyF3I	CTNAG	7 cut(s)	256, 331, 426, 459, 501, 613, 825
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	8 cut(s)	29, 59, 201, 349, 690, 730, 803, 970
HspAI	GCGC	2 cut(s)	695, 1000
KspAI	GTTAAC	2 cut(s)	385, 469
Kzo9I	GATC	8 cut(s)	72, 84, 92, 283, 400, 505, 710, 715
LmnI	GCTCC	4 cut(s)	335, 702, 796, 976
Lsp1109I	GCAGC	1 cut(s)	646
LweI	GCATC	1 cut(s)	256
MabI	ACCWGGT	1 cut(s)	856
MaeI	CTAG	2 cut(s)	534, 663
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	2 cut(s)	580, 665
MalI	GATC	8 cut(s)	74, 86, 94, 285, 402, 507, 712, 717
MboI	GATC	8 cut(s)	72, 84, 92, 283, 400, 505, 710, 715
MboII	GAAGA	9 cut(s)	154, 191, 194, 354, 527, 652, 778, 917, 977
MflI	RGATCY	3 cut(s)	72, 505, 715
MhlI	GDGCHC	2 cut(s)	340, 826
MluCI	AATT	5 cut(s)	527, 598, 742, 834, 880
MlyI	GAGTC	2 cut(s)	353, 766
MnlI	CCTC	8 cut(s)	165, 217, 286, 373, 391, 436, 468, 505
MseI	TTAA	2 cut(s)	384, 468
MslI	CAYNNNNRTG	2 cut(s)	614, 685
MspI	CCGG	2 cut(s)	76, 820
MspR9I	CCNGG	3 cut(s)	821, 858, 955
Mva1269I	GAATGC	1 cut(s)	649
MvaI	CCWGG	2 cut(s)	858, 955
MwoI	GCNNNNNNNGC	3 cut(s)	15, 422, 946
NciI	CCSGG	1 cut(s)	821
NcoI	CCATGG	1 cut(s)	197
NdeII	GATC	8 cut(s)	72, 84, 92, 283, 400, 505, 710, 715
NlaIII	CATG	8 cut(s)	29, 59, 201, 349, 690, 730, 803, 970
NlaIV	GGNNCC	3 cut(s)	74, 507, 978
NspI	RCATGY	1 cut(s)	690
PcsI	WCGNNNNNNNCGW	1 cut(s)	124
PctI	GAATGC	1 cut(s)	649
PfeI	GAWTC	2 cut(s)	110, 208
PfoI	TCCNGGA	1 cut(s)	953
PkrI	GCNGC	2 cut(s)	560, 661
PleI	GAGTC	2 cut(s)	353, 765
PpsI	GAGTC	2 cut(s)	353, 765
Psp124BI	GAGCTC	1 cut(s)	340
Psp6I	CCWGG	2 cut(s)	856, 953
PspFI	CCCAGC	1 cut(s)	34
PspGI	CCWGG	2 cut(s)	856, 953
PspN4I	GGNNCC	3 cut(s)	74, 507, 978
PsuI	RGATCY	3 cut(s)	72, 505, 715
RsaI	GTAC	2 cut(s)	54, 992
RsaNI	GTAC	2 cut(s)	53, 991
RseI	CAYNNNNRTG	2 cut(s)	614, 685
SacI	GAGCTC	1 cut(s)	340
SalI	GTCGAC	1 cut(s)	934
SaqAI	TTAA	2 cut(s)	384, 468
SatI	GCNGC	2 cut(s)	559, 660
Sau3AI	GATC	8 cut(s)	72, 84, 92, 283, 400, 505, 710, 715
SchI	GAGTC	2 cut(s)	353, 766
ScrFI	CCNGG	3 cut(s)	821, 858, 955
SduI	GDGCHC	2 cut(s)	340, 826
SexAI	ACCWGGT	1 cut(s)	856
SfaNI	GCATC	1 cut(s)	256
SfcI	CTRYAG	2 cut(s)	489, 670
SmiMI	CAYNNNNRTG	2 cut(s)	614, 685
SmlI	CTYRAG	2 cut(s)	263, 1011
SmoI	CTYRAG	2 cut(s)	263, 1011
Sse9I	AATT	5 cut(s)	527, 598, 742, 834, 880
SsiI	CCGC	2 cut(s)	559, 690
SspMI	CTAG	2 cut(s)	534, 663
SstI	GAGCTC	1 cut(s)	340
StyD4I	CCNGG	3 cut(s)	819, 856, 953
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	3 cut(s)	377, 473, 899
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	6 cut(s)	46, 115, 130, 403, 596, 935
TasI	AATT	5 cut(s)	527, 598, 742, 834, 880
TatI	WGTACW	2 cut(s)	52, 990
TauI	GCSGC	1 cut(s)	561
TfiI	GAWTC	2 cut(s)	110, 208
Tru1I	TTAA	2 cut(s)	384, 468
Tru9I	TTAA	2 cut(s)	384, 468
TscAI	CASTG	3 cut(s)	94, 382, 621
TseI	GCWGC	1 cut(s)	659
TspDTI	ATGAA	7 cut(s)	312, 336, 498, 765, 779, 882, 918
TspRI	CASTG	3 cut(s)	94, 382, 621
XapI	RAATTY	2 cut(s)	598, 834
XceI	RCATGY	1 cut(s)	690
XmiI	GTMKAC	1 cut(s)	935
XspI	CTAG	2 cut(s)	534, 663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.