Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8441339.1

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Forward (+)

4 .. 1129

Gene Structure 1126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8441339.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgcagtatgtgtcagtcgcaaagcttcagaacaagcttggaggagaagcaaatcagagtacagtgcggaagatgattgataagatggcacaagaaggttttgttgaagccaaaggcaaccgaaggctaggaaagcgtgtgatccattctgatgttactgagaagaaacttattgaagtccataaagctttgaattttgatgcaatggatgttgacaacgttgaaccaccaagcaagtccaatcatcaagacattcatccaatgggaagcaactacagagacacatccacatgtggtgtgctccgctcaattggatcagatctcacacgcatgagaataaggcctaattcacaggaatgtagtccaaacaggagtgagcagactacttcaaagacaaaggagcagggaaacactcccacaagcagggctcagccagtaatttcaagagagagctttgcacctggcaatgatgatattagagccaatggcaacacaaatcacagtgacgatggggagagagtggtctgtagtagtatttccacccaaggcaaacgttccaggaaaacaagcacagtgaaggagcctattcttcagtacgcaaagcgccagagatctcaagctgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

208

Amino Acids

23.13

Weight (kDa)

9.71

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	306
AciI	CCGC	2 cut(s)	67, 304
AclI	AACGTT	2 cut(s)	219, 553
AclWI	GGATC	2 cut(s)	136, 322
AcsI	RAATTY	1 cut(s)	193
AcuI	CTGAAG	2 cut(s)	11, 575
AfaI	GTAC	2 cut(s)	61, 596
AfiI	CCNNNNNNNGG	1 cut(s)	423
AflIII	ACRYGT	1 cut(s)	290
AgsI	TTSAA	6 cut(s)	107, 176, 193, 224, 390, 444
AjnI	CCWGG	2 cut(s)	460, 557
AluBI	AGCT	5 cut(s)	25, 37, 188, 453, 620
AluI	AGCT	5 cut(s)	25, 37, 188, 453, 620
Alw21I	GWGCWC	1 cut(s)	303
Alw26I	GTCTC	1 cut(s)	273
AlwI	GGATC	2 cut(s)	136, 322
AoxI	GGCC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	606
BanII	GRGCYC	1 cut(s)	430
Bbv12I	GWGCWC	1 cut(s)	303
BccI	CCATC	2 cut(s)	79, 503
BciT130I	CCWGG	2 cut(s)	462, 559
BcoDI	GTCTC	1 cut(s)	273
BfaI	CTAG	1 cut(s)	128
BfmI	CTRYAG	2 cut(s)	274, 526
BfoI	RGCGCY	1 cut(s)	607
BglII	AGATCT	2 cut(s)	319, 611
BlpI	GCTNAGC	1 cut(s)	429
Bme1390I	CCNGG	2 cut(s)	462, 559
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	462, 559
BmsI	GCATC	1 cut(s)	190
Bpu1102I	GCTNAGC	1 cut(s)	429
BpuEI	CTTGAG	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	544
Bsc4I	CCNNNNNNNGG	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	434
Bse3DI	GCAATG	2 cut(s)	210, 472
BseBI	CCWGG	2 cut(s)	462, 559
BseDI	CCNNGG	1 cut(s)	544
BseGI	GGATG	3 cut(s)	214, 256, 284
BseLI	CCNNNNNNNGG	1 cut(s)	423
BseMI	GCAATG	2 cut(s)	210, 472
BseMII	CTCAG	2 cut(s)	150, 443
BseNI	ACTGG	1 cut(s)	434
BseRI	GAGGAG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	303
BslI	CCNNNNNNNGG	1 cut(s)	423
BsmAI	GTCTC	1 cut(s)	273
BsnI	GGCC	1 cut(s)	343
Bsp1286I	GDGCHC	2 cut(s)	303, 430
Bsp143I	GATC	4 cut(s)	141, 314, 319, 611
Bsp1720I	GCTNAGC	1 cut(s)	429
BspACI	CCGC	2 cut(s)	67, 304
BspANI	GGCC	1 cut(s)	343
BspCNI	CTCAG	2 cut(s)	151, 442
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	2 cut(s)	136, 322
BsrBI	CCGCTC	1 cut(s)	306
BsrDI	GCAATG	2 cut(s)	210, 472
BsrI	ACTGG	1 cut(s)	434
BssECI	CCNNGG	1 cut(s)	544
BssMI	GATC	4 cut(s)	141, 314, 319, 611
BssT1I	CCWWGG	1 cut(s)	544
Bst2UI	CCWGG	2 cut(s)	462, 559
Bst4CI	ACNGT	3 cut(s)	64, 503, 574
BstDEI	CTNAG	2 cut(s)	159, 429
BstF5I	GGATG	3 cut(s)	214, 256, 284
BstH2I	RGCGCY	1 cut(s)	607
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	4 cut(s)	144, 317, 322, 614
BstMAI	GTCTC	1 cut(s)	273
BstMBI	GATC	4 cut(s)	141, 314, 319, 611
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	2 cut(s)	462, 559
BstNSI	RCATGY	1 cut(s)	294
BstSCI	CCNGG	2 cut(s)	460, 557
BstSFI	CTRYAG	2 cut(s)	274, 526
BstX2I	RGATCY	2 cut(s)	319, 611
BstYI	RGATCY	2 cut(s)	319, 611
BsuRI	GGCC	1 cut(s)	343
BtsCI	GGATG	3 cut(s)	214, 256, 284
BtsIMutI	CAGTG	3 cut(s)	69, 508, 579
CfoI	GCGC	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	60, 595
CviAII	CATG	2 cut(s)	291, 331
CviQI	GTAC	2 cut(s)	60, 595
DdeI	CTNAG	2 cut(s)	159, 429
DpnI	GATC	4 cut(s)	143, 316, 321, 613
DpnII	GATC	4 cut(s)	141, 314, 319, 611
Eco130I	CCWWGG	1 cut(s)	544
Eco147I	AGGCCT	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	430
Eco57I	CTGAAG	2 cut(s)	11, 575
EcoRII	CCWGG	2 cut(s)	460, 557
EcoT14I	CCWWGG	1 cut(s)	544
EcoT38I	GRGCYC	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	544
FaeI	CATG	2 cut(s)	294, 334
FaiI	YATR	4 cut(s)	9, 183, 292, 332
FatI	CATG	2 cut(s)	290, 330
FokI	GGATG	3 cut(s)	221, 243, 271
FriOI	GRGCYC	1 cut(s)	430
FspBI	CTAG	1 cut(s)	128
GlaI	GCGC	1 cut(s)	605
HaeII	RGCGCY	1 cut(s)	607
HaeIII	GGCC	1 cut(s)	343
HhaI	GCGC	1 cut(s)	606
Hin1II	CATG	2 cut(s)	294, 334
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HindIII	AAGCTT	3 cut(s)	23, 35, 186
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	5 cut(s)	30, 57, 151, 319, 626
Hpy188III	TCNNGA	2 cut(s)	248, 444
Hpy8I	GTNNAC	1 cut(s)	214
HpyAV	CCTTC	3 cut(s)	89, 117, 571
HpyCH4III	ACNGT	3 cut(s)	64, 503, 574
HpyCH4IV	ACGT	2 cut(s)	219, 553
HpyCH4V	TGCA	3 cut(s)	4, 203, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	2 cut(s)	159, 429
HpySE526I	ACGT	2 cut(s)	219, 553
Hsp92II	CATG	2 cut(s)	294, 334
HspAI	GCGC	1 cut(s)	604
Kzo9I	GATC	4 cut(s)	141, 314, 319, 611
LmnI	GCTCC	3 cut(s)	306, 400, 580
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	128
MaeII	ACGT	2 cut(s)	219, 553
MaeIII	GTNAC	2 cut(s)	154, 503
MalI	GATC	4 cut(s)	143, 316, 321, 613
MbiI	CCGCTC	1 cut(s)	306
MboI	GATC	4 cut(s)	141, 314, 319, 611
MboII	GAAGA	3 cut(s)	82, 175, 581
MfeI	CAATTG	1 cut(s)	309
MflI	RGATCY	2 cut(s)	319, 611
MhlI	GDGCHC	2 cut(s)	303, 430
MluCI	AATT	4 cut(s)	193, 309, 346, 438
MnlI	CCTC	1 cut(s)	35
MslI	CAYNNNNRTG	4 cut(s)	150, 289, 329, 355
MspR9I	CCNGG	2 cut(s)	462, 559
MunI	CAATTG	1 cut(s)	309
MvaI	CCWGG	2 cut(s)	462, 559
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeII	GATC	4 cut(s)	141, 314, 319, 611
NlaIII	CATG	2 cut(s)	294, 334
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	1 cut(s)	503
NspI	RCATGY	1 cut(s)	294
PceI	AGGCCT	1 cut(s)	343
PciI	ACATGT	1 cut(s)	290
PfoI	TCCNGGA	1 cut(s)	557
PscI	ACATGT	1 cut(s)	290
Psp1406I	AACGTT	2 cut(s)	219, 553
Psp6I	CCWGG	2 cut(s)	460, 557
PspGI	CCWGG	2 cut(s)	460, 557
PspN4I	GGNNCC	1 cut(s)	582
PsuI	RGATCY	2 cut(s)	319, 611
RsaI	GTAC	2 cut(s)	61, 596
RsaNI	GTAC	2 cut(s)	60, 595
RseI	CAYNNNNRTG	4 cut(s)	150, 289, 329, 355
Sau3AI	GATC	4 cut(s)	141, 314, 319, 611
ScrFI	CCNGG	2 cut(s)	462, 559
SduI	GDGCHC	2 cut(s)	303, 430
SetI	ASST	9 cut(s)	27, 39, 100, 190, 222, 455, 463, 556, 622
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	2 cut(s)	274, 526
SmiMI	CAYNNNNRTG	4 cut(s)	150, 289, 329, 355
SmlI	CTYRAG	1 cut(s)	615
SmoI	CTYRAG	1 cut(s)	615
Sse9I	AATT	4 cut(s)	193, 309, 346, 438
SseBI	AGGCCT	1 cut(s)	343
SsiI	CCGC	2 cut(s)	67, 304
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	460, 557
StyI	CCWWGG	1 cut(s)	544
TaaI	ACNGT	3 cut(s)	64, 503, 574
TaiI	ACGT	2 cut(s)	222, 556
TasI	AATT	4 cut(s)	193, 309, 346, 438
TatI	WGTACW	1 cut(s)	59
TscAI	CASTG	3 cut(s)	69, 508, 579
TseFI	GTSAC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	503
TspDTI	ATGAA	1 cut(s)	245
TspRI	CASTG	3 cut(s)	69, 508, 579
XapI	RAATTY	1 cut(s)	193
XceI	RCATGY	1 cut(s)	294
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.