Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Reverse (-)

53547105 .. 53548756

Gene Structure 1652 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00372090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGACAAGCTGGTTGTGGAAGGCATTCTATCAAAAGCTGGAGGGGACACGTACACTTTTAACAGGCAGAAGAAGTCTGATTATGAGTTCACTGTAGTGAAACAAGAAATTAATAGTCAAGCAGTCCTGGTTGGTGACAAAACTCCAAAGTCTAATGATCACATGTACATGAAGCGTGTGATCCATTCTGATGTTACTGAGAAGAAACTTATTGAAGTCCATAAAGCTTTGAATTTTGATGCAATGGATGTTGACAACGTTGAACCACCAAGCAAGTCAAATCATCAAGACATTCATCCAATGGGAAGCAACTACAGAGACACATCCACATGTGGTGTGCTCCGCTCGATTGGATCAGTTCTCACACGCATGAGAATAAGGCCTAATGCACAGGAATATAGTCCAAACAGGAGTGAGCAGACTACTTCAAAGACAAAGGAGCAGGGAAACACTCCCACAAGCAGAGAGAGCTTTGCACCTGGCAATGATGATATTAGAGCCAATGGCAACACAAATCACTGTGACGATGGGGAGAGAGTGGTGAAGGAGCCTATTCTTCAGTACGCAAAGCGCCAGAGATCTCAAGCTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

197

Amino Acids

22.18

Weight (kDa)

8.45

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	345
AciI	CCGC	1 cut(s)	343
AclI	AACGTT	1 cut(s)	258
AclWI	GGATC	2 cut(s)	175, 361
AcsI	RAATTY	1 cut(s)	232
AcuI	CTGAAG	1 cut(s)	542
AfaI	GTAC	3 cut(s)	53, 167, 563
AflIII	ACRYGT	3 cut(s)	48, 162, 329
AgsI	TTSAA	4 cut(s)	215, 232, 263, 429
AjnI	CCWGG	2 cut(s)	126, 478
AleI	CACNNNNGTG	1 cut(s)	95
AluBI	AGCT	5 cut(s)	10, 38, 227, 471, 587
AluI	AGCT	5 cut(s)	10, 38, 227, 471, 587
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	312
AlwI	GGATC	2 cut(s)	175, 361
AoxI	GGCC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	232
AseI	ATTAAT	1 cut(s)	111
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	1 cut(s)	573
AsuHPI	GGTGA	2 cut(s)	146, 553
Bbv12I	GWGCWC	1 cut(s)	342
BccI	CCATC	1 cut(s)	521
BciT130I	CCWGG	2 cut(s)	128, 480
BclI	TGATCA	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	312
BfmI	CTRYAG	2 cut(s)	93, 313
BfoI	RGCGCY	1 cut(s)	574
BglII	AGATCT	1 cut(s)	578
Bme1390I	CCNGG	2 cut(s)	128, 480
BmiI	GGNNCC	1 cut(s)	549
BmrFI	CCNGG	2 cut(s)	128, 480
BmsI	GCATC	1 cut(s)	229
BpmI	CTGGAG	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	567
BsaAI	YACGTR	1 cut(s)	51
Bse3DI	GCAATG	2 cut(s)	249, 490
BseBI	CCWGG	2 cut(s)	128, 480
BseGI	GGATG	3 cut(s)	253, 295, 323
BseMI	GCAATG	2 cut(s)	249, 490
BseMII	CTCAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	382
BsiHKAI	GWGCWC	1 cut(s)	342
BslFI	GGGAC	1 cut(s)	59
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	1 cut(s)	59
BsmI	GAATGC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	382
Bsp1286I	GDGCHC	1 cut(s)	342
Bsp1407I	TGTACA	1 cut(s)	165
Bsp143I	GATC	4 cut(s)	157, 180, 353, 578
BspACI	CCGC	1 cut(s)	343
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	549
BspPI	GGATC	2 cut(s)	175, 361
BsrBI	CCGCTC	1 cut(s)	345
BsrDI	GCAATG	2 cut(s)	249, 490
BsrGI	TGTACA	1 cut(s)	165
BssMI	GATC	4 cut(s)	157, 180, 353, 578
Bst2UI	CCWGG	2 cut(s)	128, 480
Bst4CI	ACNGT	2 cut(s)	94, 521
BstAUI	TGTACA	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	3 cut(s)	253, 295, 323
BstH2I	RGCGCY	1 cut(s)	574
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	4 cut(s)	160, 183, 356, 581
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	4 cut(s)	157, 180, 353, 578
BstMWI	GCNNNNNNNGC	1 cut(s)	468
BstNI	CCWGG	2 cut(s)	128, 480
BstNSI	RCATGY	2 cut(s)	166, 333
BstSCI	CCNGG	2 cut(s)	126, 478
BstSFI	CTRYAG	2 cut(s)	93, 313
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BsuRI	GGCC	1 cut(s)	382
BtsCI	GGATG	3 cut(s)	253, 295, 323
BtsIMutI	CAGTG	2 cut(s)	90, 517
CfoI	GCGC	1 cut(s)	573
Csp6I	GTAC	3 cut(s)	52, 166, 562
CviAII	CATG	4 cut(s)	163, 169, 330, 370
CviJI	RGCY	8 cut(s)	10, 38, 227, 382, 471, 500, 550, 587
CviKI_1	RGCY	8 cut(s)	10, 38, 227, 382, 471, 500, 550, 587
CviQI	GTAC	3 cut(s)	52, 166, 562
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	4 cut(s)	159, 182, 355, 580
DpnII	GATC	4 cut(s)	157, 180, 353, 578
Eco147I	AGGCCT	1 cut(s)	382
Eco57I	CTGAAG	1 cut(s)	542
EcoRII	CCWGG	2 cut(s)	126, 478
FaeI	CATG	4 cut(s)	166, 172, 333, 373
FaiI	YATR	7 cut(s)	84, 164, 170, 222, 331, 371, 399
FaqI	GGGAC	1 cut(s)	59
FatI	CATG	4 cut(s)	162, 168, 329, 369
FbaI	TGATCA	1 cut(s)	157
FokI	GGATG	3 cut(s)	260, 282, 310
GlaI	GCGC	1 cut(s)	572
GsuI	CTGGAG	1 cut(s)	60
HaeII	RGCGCY	1 cut(s)	574
HaeIII	GGCC	1 cut(s)	382
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	4 cut(s)	166, 172, 333, 373
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	225
HphI	GGTGA	2 cut(s)	146, 553
Hpy166II	GTNNAC	3 cut(s)	54, 90, 253
Hpy188I	TCNGA	3 cut(s)	79, 190, 593
Hpy188III	TCNNGA	1 cut(s)	287
Hpy8I	GTNNAC	3 cut(s)	54, 90, 253
HpyAV	CCTTC	2 cut(s)	14, 538
HpyCH4III	ACNGT	2 cut(s)	94, 521
HpyCH4IV	ACGT	2 cut(s)	50, 258
HpyCH4V	TGCA	3 cut(s)	242, 389, 476
HpyF10VI	GCNNNNNNNGC	1 cut(s)	468
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	2 cut(s)	50, 258
Hsp92II	CATG	4 cut(s)	166, 172, 333, 373
HspAI	GCGC	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	157
Kzo9I	GATC	4 cut(s)	157, 180, 353, 578
LmnI	GCTCC	3 cut(s)	345, 439, 547
LweI	GCATC	1 cut(s)	229
MaeII	ACGT	2 cut(s)	50, 258
MaeIII	GTNAC	3 cut(s)	134, 193, 521
MalI	GATC	4 cut(s)	159, 182, 355, 580
MbiI	CCGCTC	1 cut(s)	345
MboI	GATC	4 cut(s)	157, 180, 353, 578
MboII	GAAGA	3 cut(s)	82, 214, 548
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	342
MluCI	AATT	2 cut(s)	108, 232
MnlI	CCTC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	2 cut(s)	60, 111
MslI	CAYNNNNRTG	5 cut(s)	95, 167, 189, 328, 368
MspR9I	CCNGG	2 cut(s)	128, 480
Mva1269I	GAATGC	1 cut(s)	24
MvaI	CCWGG	2 cut(s)	128, 480
MwoI	GCNNNNNNNGC	1 cut(s)	468
NdeII	GATC	4 cut(s)	157, 180, 353, 578
NlaIII	CATG	4 cut(s)	166, 172, 333, 373
NlaIV	GGNNCC	1 cut(s)	549
NmuCI	GTSAC	2 cut(s)	134, 521
NspI	RCATGY	2 cut(s)	166, 333
OliI	CACNNNNGTG	1 cut(s)	95
PceI	AGGCCT	1 cut(s)	382
PciI	ACATGT	2 cut(s)	162, 329
PctI	GAATGC	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	24
Ppu21I	YACGTR	1 cut(s)	51
PscI	ACATGT	2 cut(s)	162, 329
PshBI	ATTAAT	1 cut(s)	111
Psp1406I	AACGTT	1 cut(s)	258
Psp6I	CCWGG	2 cut(s)	126, 478
PspGI	CCWGG	2 cut(s)	126, 478
PspN4I	GGNNCC	1 cut(s)	549
PsuI	RGATCY	1 cut(s)	578
RsaI	GTAC	3 cut(s)	53, 167, 563
RsaNI	GTAC	3 cut(s)	52, 166, 562
RseI	CAYNNNNRTG	5 cut(s)	95, 167, 189, 328, 368
SaqAI	TTAA	2 cut(s)	60, 111
Sau3AI	GATC	4 cut(s)	157, 180, 353, 578
ScrFI	CCNGG	2 cut(s)	128, 480
SduI	GDGCHC	1 cut(s)	342
SetI	ASST	8 cut(s)	12, 40, 53, 229, 261, 473, 481, 589
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	2 cut(s)	93, 313
SmiMI	CAYNNNNRTG	5 cut(s)	95, 167, 189, 328, 368
SmlI	CTYRAG	1 cut(s)	582
SmoI	CTYRAG	1 cut(s)	582
Sse9I	AATT	2 cut(s)	108, 232
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	1 cut(s)	343
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	2 cut(s)	126, 478
TaaI	ACNGT	2 cut(s)	94, 521
TaiI	ACGT	2 cut(s)	53, 261
TaqI	TCGA	1 cut(s)	347
TasI	AATT	2 cut(s)	108, 232
TatI	WGTACW	1 cut(s)	165
Tru1I	TTAA	2 cut(s)	60, 111
Tru9I	TTAA	2 cut(s)	60, 111
TscAI	CASTG	2 cut(s)	97, 524
TseFI	GTSAC	2 cut(s)	134, 521
Tsp45I	GTSAC	2 cut(s)	134, 521
TspDTI	ATGAA	2 cut(s)	185, 284
TspRI	CASTG	2 cut(s)	97, 524
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	1 cut(s)	232
XceI	RCATGY	2 cut(s)	166, 333
XmnI	GAANNNNTTC	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.