Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020995.1

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Forward (+)

54625 .. 55212

Gene Structure 588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020995.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

atgcttgtgttatcagctagtaactacagagatacatccacatgtggcgcactctactccattggatcagatatgacacgcatgagaataagagctaattcaactgaacacagtccaatgaagagtgagcagactacttcaatgagaaaggagcatggaaacacccccaccatccaggctcagcctaaaatttcaagagagagttatgcacctggtaatgatgaaaacagagcaaatggcaacataaactattgtgatgaagatgagaggatgatgtgcagtagtaggtcgacgcaagacaagcgttccaggaaaacaagcatggtcaaggagcctattcttcagtacacaaagcgccataaatctcaagctctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

125

Amino Acids

14.21

Weight (kDa)

9.43

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	290
AclWI	GGATC	1 cut(s)	73
AcsI	RAATTY	1 cut(s)	189
AcuI	CTGAAG	1 cut(s)	326
AfaI	GTAC	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	41
AgsI	TTSAA	3 cut(s)	102, 141, 195
AjnI	CCWGG	3 cut(s)	174, 211, 308
AluBI	AGCT	3 cut(s)	17, 95, 371
AluI	AGCT	3 cut(s)	17, 95, 371
AlwI	GGATC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	189
AspLEI	GCGC	2 cut(s)	50, 357
BccI	CCATC	1 cut(s)	179
BciT130I	CCWGG	3 cut(s)	176, 213, 310
BfaI	CTAG	1 cut(s)	18
BfmI	CTRYAG	1 cut(s)	25
BfoI	RGCGCY	1 cut(s)	358
BlpI	GCTNAGC	1 cut(s)	180
Bme1390I	CCNGG	3 cut(s)	176, 213, 310
BmiI	GGNNCC	1 cut(s)	333
BmrFI	CCNGG	3 cut(s)	176, 213, 310
Bpu1102I	GCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	351
BseBI	CCWGG	3 cut(s)	176, 213, 310
BseGI	GGATG	3 cut(s)	35, 171, 276
BseMII	CTCAG	1 cut(s)	194
BsgI	GTGCAG	1 cut(s)	298
Bsp143I	GATC	1 cut(s)	65
Bsp1720I	GCTNAGC	1 cut(s)	180
BspCNI	CTCAG	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	333
BspPI	GGATC	1 cut(s)	73
BssMI	GATC	1 cut(s)	65
Bst2UI	CCWGG	3 cut(s)	176, 213, 310
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	1 cut(s)	116
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	35, 171, 276
BstH2I	RGCGCY	1 cut(s)	358
BstHHI	GCGC	2 cut(s)	50, 357
BstKTI	GATC	1 cut(s)	68
BstMBI	GATC	1 cut(s)	65
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstNI	CCWGG	3 cut(s)	176, 213, 310
BstNSI	RCATGY	1 cut(s)	45
BstSCI	CCNGG	3 cut(s)	174, 211, 308
BstSFI	CTRYAG	1 cut(s)	25
BtsCI	GGATG	3 cut(s)	35, 171, 276
CfoI	GCGC	2 cut(s)	50, 357
CseI	GACGC	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	211
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	4 cut(s)	42, 82, 155, 322
CviJI	RGCY	6 cut(s)	17, 95, 179, 184, 334, 371
CviKI_1	RGCY	6 cut(s)	17, 95, 179, 184, 334, 371
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	1 cut(s)	67
DpnII	GATC	1 cut(s)	65
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco57I	CTGAAG	1 cut(s)	326
EcoRII	CCWGG	3 cut(s)	174, 211, 308
FaeI	CATG	4 cut(s)	45, 85, 158, 325
FaiI	YATR	8 cut(s)	43, 74, 83, 156, 207, 245, 323, 360
FatI	CATG	4 cut(s)	41, 81, 154, 321
FblI	GTMKAC	1 cut(s)	290
FokI	GGATG	3 cut(s)	22, 158, 283
FspBI	CTAG	1 cut(s)	18
GlaI	GCGC	2 cut(s)	49, 356
HaeII	RGCGCY	1 cut(s)	358
HgaI	GACGC	1 cut(s)	301
HhaI	GCGC	2 cut(s)	50, 357
Hin1II	CATG	4 cut(s)	45, 85, 158, 325
Hin6I	GCGC	2 cut(s)	48, 355
HinP1I	GCGC	2 cut(s)	48, 355
HincII	GTYRAC	1 cut(s)	291
HindII	GTYRAC	1 cut(s)	291
Hpy166II	GTNNAC	2 cut(s)	291, 348
Hpy188I	TCNGA	2 cut(s)	70, 377
Hpy188III	TCNNGA	1 cut(s)	195
Hpy8I	GTNNAC	2 cut(s)	291, 348
Hpy99I	CGWCG	1 cut(s)	295
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4V	TGCA	2 cut(s)	209, 279
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	180
Hsp92II	CATG	4 cut(s)	45, 85, 158, 325
HspAI	GCGC	2 cut(s)	48, 355
Kzo9I	GATC	1 cut(s)	65
LmnI	GCTCC	2 cut(s)	151, 331
LpnPI	CCDG	6 cut(s)	161, 188, 198, 225, 295, 322
MabI	ACCWGGT	1 cut(s)	211
MaeI	CTAG	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	20
MalI	GATC	1 cut(s)	67
MboI	GATC	1 cut(s)	65
MboII	GAAGA	3 cut(s)	133, 272, 332
MluCI	AATT	2 cut(s)	97, 189
MnlI	CCTC	1 cut(s)	261
MslI	CAYNNNNRTG	1 cut(s)	40
MspR9I	CCNGG	3 cut(s)	176, 213, 310
MvaI	CCWGG	3 cut(s)	176, 213, 310
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	1 cut(s)	65
NlaIII	CATG	4 cut(s)	45, 85, 158, 325
NlaIV	GGNNCC	1 cut(s)	333
NspI	RCATGY	1 cut(s)	45
PciI	ACATGT	1 cut(s)	41
PfoI	TCCNGGA	1 cut(s)	308
PscI	ACATGT	1 cut(s)	41
Psp6I	CCWGG	3 cut(s)	174, 211, 308
PspGI	CCWGG	3 cut(s)	174, 211, 308
PspN4I	GGNNCC	1 cut(s)	333
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
RseI	CAYNNNNRTG	1 cut(s)	40
SalI	GTCGAC	1 cut(s)	289
Sau3AI	GATC	1 cut(s)	65
ScrFI	CCNGG	3 cut(s)	176, 213, 310
SetI	ASST	5 cut(s)	19, 97, 214, 290, 373
SexAI	ACCWGGT	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	25
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	2 cut(s)	97, 189
SspMI	CTAG	1 cut(s)	18
StyD4I	CCNGG	3 cut(s)	174, 211, 308
TaaI	ACNGT	1 cut(s)	113
TaqI	TCGA	1 cut(s)	290
TasI	AATT	2 cut(s)	97, 189
TatI	WGTACW	1 cut(s)	345
TspDTI	ATGAA	3 cut(s)	134, 237, 273
XapI	RAATTY	1 cut(s)	189
XceI	RCATGY	1 cut(s)	45
XmiI	GTMKAC	1 cut(s)	290
XspI	CTAG	1 cut(s)	18

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.