RLG00000006987

HORMA domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
12467454 .. 12471564
4111 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006987

Sequence Viewer

Length: 1518 bp
ATGAATATCAATCGATCAGGGAATAAGAAACAGGGTGGAACATTCAAGTATAACTCCACAACAGAAATTACTCCCAACCAGATGAGGAGTTCTGCTTGTAAAATGGTCCGCACACTGGTTCAGCTGATGAGAACTTTGGATAGAATGCCAGAAGAGCGCACCATACTGATGAAACTCCTATACTATGATCATGTCACGCCAGCAGATTATGAGCCTCCATTCTTCAGAGGCTGCACAGAAGAAGAAACTCGAAACTCATGGACCAAGAATCCTTTGAAAATGGAAGTTGGGAATGTAAACAGCAAGCATCATGTCTTAGCTCTCAAGGTAAAGAGCGTGCTTGATCCCTGTGAGGATGAAAACGATGATACTCAAGATGATGAAGTGAGCTTGGGAGATGACTCCATGCAAATGGATGGCTCTTCTGAATCTGACAGTGAGGTGAATCAATCACAAGAGAACCAATATGTAGTTGCTCCTGCAGCTAAGCATCAACCACAGGAAGATAACAGGATACTTAAGGAAGATAATTGCATGGATGATGTAGCTACAGATTATACTCAGGATCCAGAGGAAGATGAACAGCAATATTCCAGGATAAAGAACTGGATCAGTAGTTGCCATCTTGACACTGTTGAAGTTACGGATGTTCTTTCGAATTTTCCAGACATTTCAGTGGTTCTGGCTGAAGAAATTATGGAGAAGCTTGTTGTGAAAGGCATTCTATCAAAAACTGGAGGGGACAATTACACTATTAATAGGCAGAAGAAGTCTGATTATGAGTTCACTGTGGTGAAACAAGAAATTAATAGTCAAGCAGTCCTGGTTGGTGACAAAACTCTGAAGTACAATGATCACATGTACATGAAGGCGCTGTGTCATGCTCTTCCTATGCAGTATGTATCAGTTGCAAAGCTTCAGAACAAGCTTGGAGGAGAAGCAAATCAGAGTACAGTGCGGAAGATGATTGATAAGATGGCACAAGAAGGTTTTGTTGAAGCCAAAGGCAACCGAAGGCTAGGAAAGCGTGTGATCCATTCTGATGTTACTGAGAAGAAACTTATTGAAGTCCAGAAAGCTTTGAATTTTGATGCAATGGATGTTGACAACGTTGAACTACCAAGCAAGTCAAATCATCAAGATTTTCATCCAATGGGAAGCAACTACAGAGACACATCCACATGTGGTGTGCTCCGCTCAATTGGATCAGATCTCACACGCATGAGAATTAGGCCTAATTCACAGGAATATAGTCCAAACAGGAGTGAGCAGACTACTTCAAAGACAAAGGAGCAGGGAAACACTCCCACAAGCAGGGCGCAGCCAGTAGTTTCAAGAGAGAGCTTTGCCCCTGGGAATGATGATATTAGAGCCAATGGCGACACAAATCATTGTGACGATGGGGAGAGAGTGGTATGTAGTAGTATGTCCACCCAAGGCAAGCGTTCCAGGAAAACCAGCACGGTGAAGGAGCCTATTCTCCAGTACACAAAGCGCCAGAGATCTCAAGCCGTCTGA

Protein Analysis

506

Amino Acids

57.18

Weight (kDa)

5.7

Isoelectric Point (pI)

53.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HORMA PF02301 5 - 104 2.9e-25 HORMA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 1197
AciI CCGC 3 cut(s) 109, 958, 1195
AclI AACGTT 1 cut(s) 1110
AclWI GGATC 6 cut(s) 338, 560, 573, 617, 1027, 1213
AcsI RAATTY 2 cut(s) 658, 1084
AcuI CTGAAG 4 cut(s) 208, 708, 863, 902
AfaI GTAC 4 cut(s) 848, 863, 952, 1487
AfiI CCNNNNNNNGG 2 cut(s) 115, 1314
AflII CTTAAG 1 cut(s) 518
AflIII ACRYGT 2 cut(s) 858, 1181
AgsI TTSAA 9 cut(s) 46, 277, 638, 998, 1067, 1084, 1115, 1281, 1335
AjnI CCWGG 4 cut(s) 593, 822, 1351, 1448
AleI CACNNNNGTG 1 cut(s) 791
Alw21I GWGCWC 1 cut(s) 1194
Alw26I GTCTC 1 cut(s) 1164
AlwI GGATC 6 cut(s) 338, 560, 573, 617, 1027, 1213
AlwNI CAGNNNCTG 1 cut(s) 231
AoxI GGCC 1 cut(s) 1232
ApeKI GCWGC 3 cut(s) 231, 482, 1321
ApoI RAATTY 2 cut(s) 658, 1084
AseI ATTAAT 2 cut(s) 756, 807
AspLEI GCGC 4 cut(s) 159, 874, 1321, 1497
AspS9I GGNCC 2 cut(s) 106, 261
AsuHPI GGTGA 4 cut(s) 454, 805, 842, 1477
AsuII TTCGAA 1 cut(s) 656
AvaII GGWCC 2 cut(s) 106, 261
BamHI GGATCC 1 cut(s) 565
Bbv12I GWGCWC 1 cut(s) 1194
BbvI GCAGC 3 cut(s) 218, 494, 1333
BccI CCATC 4 cut(s) 410, 630, 970, 1394
BceAI ACGGC 1 cut(s) 1496
BciT130I CCWGG 4 cut(s) 595, 824, 1353, 1450
BciVI GTATCC 1 cut(s) 507
BclI TGATCA 2 cut(s) 187, 853
BcoDI GTCTC 1 cut(s) 1164
BfaI CTAG 1 cut(s) 1019
BfmI CTRYAG 3 cut(s) 480, 549, 1165
BfoI RGCGCY 2 cut(s) 875, 1498
BfrI CTTAAG 1 cut(s) 518
BfuI GTATCC 1 cut(s) 507
BglII AGATCT 2 cut(s) 1210, 1502
BisI GCNGC 3 cut(s) 232, 483, 1322
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 3 cut(s) 233, 484, 1323
Bme1390I CCNGG 4 cut(s) 595, 824, 1353, 1450
Bme18I GGWCC 2 cut(s) 106, 261
BmgT120I GGNCC 2 cut(s) 106, 261
BmiI GGNNCC 2 cut(s) 567, 1473
BmrFI CCNGG 4 cut(s) 595, 824, 1353, 1450
BmsI GCATC 3 cut(s) 316, 499, 1081
BpmI CTGGAG 2 cut(s) 756, 1466
Bpu1102I GCTNAGC 1 cut(s) 486
Bpu14I TTCGAA 1 cut(s) 656
BpuEI CTTGAG 3 cut(s) 308, 357, 1491
Bsa29I ATCGAT 1 cut(s) 13
BsaBI GATNNNNATC 1 cut(s) 1146
BsaJI CCNNGG 3 cut(s) 1351, 1352, 1435
Bsc4I CCNNNNNNNGG 2 cut(s) 115, 1314
Bse1I ACTGG 5 cut(s) 120, 611, 739, 1325, 1483
Bse3DI GCAATG 1 cut(s) 1101
Bse8I GATNNNNATC 1 cut(s) 1146
BseBI CCWGG 4 cut(s) 595, 824, 1353, 1450
BseCI ATCGAT 1 cut(s) 13
BseDI CCNNGG 3 cut(s) 1351, 1352, 1435
BseGI GGATG 7 cut(s) 361, 421, 544, 652, 1105, 1147, 1175
BseJI GATNNNNATC 1 cut(s) 1146
BseLI CCNNNNNNNGG 2 cut(s) 115, 1314
BseMI GCAATG 1 cut(s) 1101
BseMII CTCAG 2 cut(s) 575, 1041
BseNI ACTGG 5 cut(s) 120, 611, 739, 1325, 1483
BseRI GAGGAG 2 cut(s) 100, 948
BseXI GCAGC 3 cut(s) 218, 494, 1333
BsgI GTGCAG 1 cut(s) 217
BshFI GGCC 1 cut(s) 1234
BshVI ATCGAT 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 1194
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 2 cut(s) 115, 1314
BsmAI GTCTC 1 cut(s) 1164
BsmFI GGGAC 1 cut(s) 755
BsmI GAATGC 2 cut(s) 150, 720
BsnI GGCC 1 cut(s) 1234
Bsp119I TTCGAA 1 cut(s) 656
Bsp1286I GDGCHC 1 cut(s) 1194
Bsp1407I TGTACA 1 cut(s) 861
Bsp1720I GCTNAGC 1 cut(s) 486
BspACI CCGC 3 cut(s) 109, 958, 1195
BspANI GGCC 1 cut(s) 1234
BspCNI CTCAG 2 cut(s) 574, 1042
BspDI ATCGAT 1 cut(s) 13
BspLI GGNNCC 2 cut(s) 567, 1473
BspMAI CTGCAG 1 cut(s) 484
BspPI GGATC 6 cut(s) 338, 560, 573, 617, 1027, 1213
BspQI GCTCTTC 3 cut(s) 147, 427, 891
BspT104I TTCGAA 1 cut(s) 656
BspTI CTTAAG 1 cut(s) 518
BsrBI CCGCTC 1 cut(s) 1197
BsrDI GCAATG 1 cut(s) 1101
BsrGI TGTACA 1 cut(s) 861
BsrI ACTGG 5 cut(s) 120, 611, 739, 1325, 1483
BssECI CCNNGG 3 cut(s) 1351, 1352, 1435
BssT1I CCWWGG 1 cut(s) 1435
Bst2UI CCWGG 4 cut(s) 595, 824, 1353, 1450
Bst4CI ACNGT 5 cut(s) 437, 634, 790, 955, 1465
Bst6I CTCTTC 3 cut(s) 147, 427, 891
BstAFI CTTAAG 1 cut(s) 518
BstAUI TGTACA 1 cut(s) 861
BstBI TTCGAA 1 cut(s) 656
BstC8I GCNNGC 4 cut(s) 201, 305, 338, 1442
BstDEI CTNAG 4 cut(s) 316, 486, 561, 1050
BstF5I GGATG 7 cut(s) 361, 421, 544, 652, 1105, 1147, 1175
BstH2I RGCGCY 2 cut(s) 875, 1498
BstHHI GCGC 4 cut(s) 159, 874, 1321, 1497
BstMAI GTCTC 1 cut(s) 1164
BstMWI GCNNNNNNNGC 3 cut(s) 154, 482, 1024
BstNI CCWGG 4 cut(s) 595, 824, 1353, 1450
BstNSI RCATGY 2 cut(s) 862, 1185
BstSCI CCNGG 4 cut(s) 593, 822, 1351, 1448
BstSFI CTRYAG 3 cut(s) 480, 549, 1165
BstV1I GCAGC 3 cut(s) 218, 494, 1333
BstX2I RGATCY 3 cut(s) 565, 1210, 1502
BstXI CCANNNNNNTGG 1 cut(s) 412
BstYI RGATCY 3 cut(s) 565, 1210, 1502
Bsu15I ATCGAT 1 cut(s) 13
BsuI GTATCC 1 cut(s) 507
BsuRI GGCC 1 cut(s) 1234
BsuTUI ATCGAT 1 cut(s) 13
BtsCI GGATG 7 cut(s) 361, 421, 544, 652, 1105, 1147, 1175
BtsIMutI CAGTG 6 cut(s) 113, 442, 630, 681, 786, 960
Cac8I GCNNGC 4 cut(s) 201, 305, 338, 1442
CaiI CAGNNNCTG 1 cut(s) 231
CfoI GCGC 4 cut(s) 159, 874, 1321, 1497
Cfr13I GGNCC 2 cut(s) 106, 261
ClaI ATCGAT 1 cut(s) 13
Csp6I GTAC 4 cut(s) 847, 862, 951, 1486
CviQI GTAC 4 cut(s) 847, 862, 951, 1486
DdeI CTNAG 4 cut(s) 316, 486, 561, 1050
Eam1104I CTCTTC 3 cut(s) 147, 427, 891
EarI CTCTTC 3 cut(s) 147, 427, 891
Eco130I CCWWGG 1 cut(s) 1435
Eco147I AGGCCT 1 cut(s) 1234
Eco47I GGWCC 2 cut(s) 106, 261
Eco57I CTGAAG 4 cut(s) 208, 708, 863, 902
EcoRII CCWGG 4 cut(s) 593, 822, 1351, 1448
EcoT14I CCWWGG 1 cut(s) 1435
ErhI CCWWGG 1 cut(s) 1435
FaqI GGGAC 1 cut(s) 755
FbaI TGATCA 2 cut(s) 187, 853
Fnu4HI GCNGC 3 cut(s) 232, 483, 1322
FokI GGATG 7 cut(s) 368, 428, 551, 659, 1112, 1134, 1162
Fsp4HI GCNGC 3 cut(s) 232, 483, 1322
FspBI CTAG 1 cut(s) 1019
GlaI GCGC 4 cut(s) 158, 873, 1320, 1496
GluI GCNGC 3 cut(s) 232, 483, 1322
GsuI CTGGAG 2 cut(s) 756, 1466
HaeII RGCGCY 2 cut(s) 875, 1498
HaeIII GGCC 1 cut(s) 1234
HhaI GCGC 4 cut(s) 159, 874, 1321, 1497
Hin6I GCGC 4 cut(s) 157, 872, 1319, 1495
HinP1I GCGC 4 cut(s) 157, 872, 1319, 1495
HincII GTYRAC 1 cut(s) 1105
HindII GTYRAC 1 cut(s) 1105
HindIII AAGCTT 4 cut(s) 704, 914, 926, 1077
HinfI GANTC 4 cut(s) 268, 401, 428, 445
HphI GGTGA 4 cut(s) 454, 805, 842, 1477
Hpy166II GTNNAC 5 cut(s) 298, 786, 1105, 1431, 1488
Hpy188III TCNNGA 8 cut(s) 374, 563, 569, 626, 665, 1072, 1139, 1335
Hpy8I GTNNAC 5 cut(s) 298, 786, 1105, 1431, 1488
HpyAV CCTTC 4 cut(s) 862, 980, 1008, 1462
HpyCH4III ACNGT 5 cut(s) 437, 634, 790, 955, 1465
HpyCH4IV ACGT 1 cut(s) 1110
HpyCH4V TGCA 7 cut(s) 234, 409, 482, 534, 895, 911, 1094
HpyF10VI GCNNNNNNNGC 3 cut(s) 154, 482, 1024
HpyF3I CTNAG 4 cut(s) 316, 486, 561, 1050
HpySE526I ACGT 1 cut(s) 1110
HspAI GCGC 4 cut(s) 157, 872, 1319, 1495
Ksp22I TGATCA 2 cut(s) 187, 853
LguI GCTCTTC 3 cut(s) 147, 427, 891
LmnI GCTCC 4 cut(s) 481, 1197, 1291, 1471
Lsp1109I GCAGC 3 cut(s) 218, 494, 1333
LweI GCATC 3 cut(s) 316, 499, 1081
MaeI CTAG 1 cut(s) 1019
MaeII ACGT 1 cut(s) 1110
MaeIII GTNAC 5 cut(s) 193, 640, 830, 1045, 1394
MbiI CCGCTC 1 cut(s) 1197
MfeI CAATTG 1 cut(s) 1200
MflI RGATCY 3 cut(s) 565, 1210, 1502
MhlI GDGCHC 1 cut(s) 1194
MlyI GAGTC 1 cut(s) 395
MnlI CCTC 8 cut(s) 78, 221, 225, 346, 433, 565, 731, 926
MseI TTAA 3 cut(s) 519, 756, 807
MslI CAYNNNNRTG 8 cut(s) 167, 410, 674, 791, 863, 1041, 1180, 1220
MspA1I CMGCKG 1 cut(s) 124
MspCI CTTAAG 1 cut(s) 518
MspR9I CCNGG 4 cut(s) 595, 824, 1353, 1450
MunI CAATTG 1 cut(s) 1200
Mva1269I GAATGC 2 cut(s) 150, 720
MvaI CCWGG 4 cut(s) 595, 824, 1353, 1450
MwoI GCNNNNNNNGC 3 cut(s) 154, 482, 1024
NlaIV GGNNCC 2 cut(s) 567, 1473
NmuCI GTSAC 3 cut(s) 193, 830, 1394
NspI RCATGY 2 cut(s) 862, 1185
NspV TTCGAA 1 cut(s) 656
OliI CACNNNNGTG 1 cut(s) 791
PasI CCCWGGG 1 cut(s) 1352
PceI AGGCCT 1 cut(s) 1234
PciI ACATGT 2 cut(s) 858, 1181
PciSI GCTCTTC 3 cut(s) 147, 427, 891
PctI GAATGC 2 cut(s) 150, 720
PfeI GAWTC 3 cut(s) 268, 428, 445
PfoI TCCNGGA 2 cut(s) 593, 1448
PkrI GCNGC 3 cut(s) 233, 484, 1323
PleI GAGTC 1 cut(s) 395
PpsI GAGTC 1 cut(s) 395
PscI ACATGT 2 cut(s) 858, 1181
PshBI ATTAAT 2 cut(s) 756, 807
Psp1406I AACGTT 1 cut(s) 1110
Psp6I CCWGG 4 cut(s) 593, 822, 1351, 1448
PspGI CCWGG 4 cut(s) 593, 822, 1351, 1448
PspN4I GGNNCC 2 cut(s) 567, 1473
PspPI GGNCC 2 cut(s) 106, 261
PstI CTGCAG 1 cut(s) 484
PstNI CAGNNNCTG 1 cut(s) 231
PsuI RGATCY 3 cut(s) 565, 1210, 1502
PvuII CAGCTG 1 cut(s) 124
RsaI GTAC 4 cut(s) 848, 863, 952, 1487
RsaNI GTAC 4 cut(s) 847, 862, 951, 1486
RseI CAYNNNNRTG 8 cut(s) 167, 410, 674, 791, 863, 1041, 1180, 1220
SapI GCTCTTC 3 cut(s) 147, 427, 891
SaqAI TTAA 3 cut(s) 519, 756, 807
SatI GCNGC 3 cut(s) 232, 483, 1322
Sau96I GGNCC 2 cut(s) 106, 261
SchI GAGTC 1 cut(s) 395
ScrFI CCNGG 4 cut(s) 595, 824, 1353, 1450
SduI GDGCHC 1 cut(s) 1194
SfaNI GCATC 3 cut(s) 316, 499, 1081
SfcI CTRYAG 3 cut(s) 480, 549, 1165
SfuI TTCGAA 1 cut(s) 656
SinI GGWCC 2 cut(s) 106, 261
SmiMI CAYNNNNRTG 8 cut(s) 167, 410, 674, 791, 863, 1041, 1180, 1220
SmlI CTYRAG 4 cut(s) 323, 372, 518, 1506
SmoI CTYRAG 4 cut(s) 323, 372, 518, 1506
SseBI AGGCCT 1 cut(s) 1234
SsiI CCGC 3 cut(s) 109, 958, 1195
SspI AATATT 1 cut(s) 590
SspMI CTAG 1 cut(s) 1019
StuI AGGCCT 1 cut(s) 1234
StyD4I CCNGG 4 cut(s) 593, 822, 1351, 1448
StyI CCWWGG 1 cut(s) 1435
TaaI ACNGT 5 cut(s) 437, 634, 790, 955, 1465
TaiI ACGT 1 cut(s) 1113
TaqI TCGA 3 cut(s) 13, 250, 656
TatI WGTACW 4 cut(s) 846, 861, 950, 1485
TfiI GAWTC 3 cut(s) 268, 428, 445
Tru1I TTAA 3 cut(s) 519, 756, 807
Tru9I TTAA 3 cut(s) 519, 756, 807
TscAI CASTG 6 cut(s) 120, 442, 637, 681, 793, 960
TseFI GTSAC 3 cut(s) 193, 830, 1394
TseI GCWGC 3 cut(s) 231, 482, 1321
Tsp45I GTSAC 3 cut(s) 193, 830, 1394
TspDTI ATGAA 7 cut(s) 17, 185, 372, 396, 594, 881, 1136
TspGWI ACGGA 1 cut(s) 659
TspRI CASTG 6 cut(s) 120, 442, 637, 681, 793, 960
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 106, 261
VspI ATTAAT 2 cut(s) 756, 807
XapI RAATTY 2 cut(s) 658, 1084
XceI RCATGY 2 cut(s) 862, 1185
XspI CTAG 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.