RchiOBHm_Chr4g0430341

HORMA domain

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
Physical Location & Seq
Reverse (-)
54899986 .. 54905150
5165 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39906

Sequence Viewer

Length: 1878 bp
ATGGTTGTGGCACAAAAACTGAAGGAGGCGGAGATCACCGAGCAGGATTCGCTTCTTCTGACGAGGAACCTGCTTCGCATCGCTATATTCAATATCAGTTACATCAGAGGCCTTTTTCCGGAGAAGTATTTCAATGATAAATCTGTTCCTGCTTTAGAGATGAAGATTAAAAAGCTAATGCCAATGGATGCAGAGTCTCGCAGACTTATTGATTGGATGGAGAAAGGTGTATATGACGCCTTGCAGAAGAAGTACCTGAAAACGCTTTTGTTCTGTGTGTGTGAAGAGGTTGAAGGGCCGATGATAGAGGAATACACATTTTCATTCAGTTACTCAAATTCCGAGAGGCAGGAGGTTTCAATGAATATCAGTCGCTCTGGAAACAAGAAGCATGGTGGAACATTCAAGTGTGACTCCACAGCAGAAATTACCCCCAACCAGATGAGAAGTTCTGCTTGTAAAATGGTCCGCACACTGGTTCAACTGATGAGAACTCTGGACAGGATGCCTGAAGAGCGCACCATACTGATGAAACTCCTATATTATGATGATGTGACGCCAGTAGATTATGAGCCTCCATTCTTCAGATGTTGCACAGAAGAAGAAACTCATAACCCATGGACAAAGAATCCTTTGAAACTGGAGGTCGGGAATGTGAACAGCAAGCATCTTGTCTTAGCTCTCAAGGTAAAGAGCGTGCTTGATCCCTGTGAGGATGAAAATGATGATAATCAAGATGATGAAGTGAGCTTAGGAGCTGACTCCATGCAAAGGGATGACTCTTCTGAAACTGACAGTGAGGTTAACCAATCACAAGAGGATCGATATATAGTTGCCCCCATAGCTAAGCGACAACCACAGGAGGACAACAGCATACCTCAGGAAGTTAACAGCATGGATGATGAAGCTACAGATGATACTCAGGATCCAGAGGAAGATGAACAGCAATTTTCTAGGATAAAGGACTGGATCAGTAGCCGCCATCTTGACAATGTTGAAGTTACTGATGTTCTCTCGAATTTCCCAGACATCTCAGTGGTTCTGACTGAAGAAATTATGGATAGGCTTGTTGCTGAAGGTGTTCTATCAAAAACTGGAGGGGACAGTTACACAATTAACAGGAAGAAGAAGTCTGACCTTGAATTTATCAAGGTAAAAAAAGAAATGGACTGTCAAGTGGTCCCTGATAGTGAAAAAACTCCAAACGCCAATGATCACTTGTACATGAAGGCACTCTATCATGTTCTTCCAATGCAGTATGTGTCAATTGCGAAGCTTCAGAACAAGCTTGGAGGAGAAGCAAATCAGAATACTGTGCGCAAGATGATTGATAAGATGGTGCAAGAAGGTTTGGTTGAAGCCAAGGGAAATCGAAGGCTAGGAAAGCGTGTGCTCCATTCTGATATTACCAAGAAAAAGCTTATTGAAGTCCAGAAAGCTTTGAATTATGATGCAATGGATGTGGACAATATTGAGCCCCAAAGCAAGTCAAATCATCAAGATTTTTATCCCATTGCTAGTAACTACAGAGACACATCCACATGCGGTGCGCTCCACTCCATTGGATCAGATCTGACACGCATGAGAATAAGGGCTAATTCAAATGAACAGAGTCCAATGAGGAGTGAGCACACTACTTCAATAAGAAAGGAGCATGGAAACACCCCCACAAGCCGGGCTCAGCCAGAAATTTCAAGAGAGAGTTTTGCACCTGGTAATGATGAAAACAGAGCAAATTGCAACACAAACCACTGTGATGAAGATGAGAGAGTGATGTGCAGTAGTAGGTCGACGCAAGACAAGCGTTCCAGGAAAACAAGCATGGTCAAGGAGCCTATTCTTCAGTACACAAAGCGCCAGAAATCTCAAGCCCTCTGA

Protein Analysis

625

Amino Acids

71.66

Weight (kDa)

5.36

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HORMA PF02301 17 - 223 2.9e-63 HORMA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1319
Acc36I ACCTGC 1 cut(s) 78
AccI GTMKAC 1 cut(s) 1790
AccIII TCCGGA 1 cut(s) 118
AciI CCGC 4 cut(s) 29, 469, 979, 1545
AclWI GGATC 6 cut(s) 698, 828, 920, 933, 977, 1573
AcsI RAATTY 4 cut(s) 337, 1018, 1142, 1689
AcuI CTGAAG 7 cut(s) 41, 531, 568, 1068, 1095, 1262, 1826
AcyI GRCGYC 2 cut(s) 237, 557
AfaI GTAC 3 cut(s) 254, 1223, 1847
AfiI CCNNNNNNNGG 4 cut(s) 118, 475, 771, 1674
AjnI CCWGG 2 cut(s) 1711, 1808
Alw21I GWGCWC 2 cut(s) 1395, 1632
Alw26I GTCTC 2 cut(s) 201, 1524
AlwI GGATC 6 cut(s) 698, 828, 920, 933, 977, 1573
Aor13HI TCCGGA 1 cut(s) 118
AoxI GGCC 2 cut(s) 109, 296
ApoI RAATTY 4 cut(s) 337, 1018, 1142, 1689
Asp700I GAANNNNTTC 2 cut(s) 128, 1080
AspLEI GCGC 4 cut(s) 519, 1320, 1552, 1857
AspS9I GGNCC 3 cut(s) 296, 466, 1180
AsuC2I CCSGG 1 cut(s) 1676
AsuHPI GGTGA 1 cut(s) 28
AvaII GGWCC 2 cut(s) 466, 1180
AxyI CCTNAGG 1 cut(s) 879
BamHI GGATCC 1 cut(s) 925
BanII GRGCYC 2 cut(s) 1479, 1681
Bbv12I GWGCWC 2 cut(s) 1395, 1632
BccI CCATC 3 cut(s) 211, 990, 1330
BcgI CGANNNNNNTGC 2 cut(s) 52, 86
BciT130I CCWGG 2 cut(s) 1713, 1810
BclI TGATCA 1 cut(s) 1213
BcnI CCSGG 1 cut(s) 1676
BcoDI GTCTC 2 cut(s) 201, 1524
BfaI CTAG 3 cut(s) 954, 1379, 1518
BfmI CTRYAG 2 cut(s) 909, 1525
BfoI RGCGCY 1 cut(s) 1858
BfuAI ACCTGC 1 cut(s) 78
BglII AGATCT 1 cut(s) 1570
BisI GCNGC 1 cut(s) 979
BlpI GCTNAGC 2 cut(s) 846, 1680
BlsI GCNGC 1 cut(s) 980
Bme1390I CCNGG 3 cut(s) 1676, 1713, 1810
Bme18I GGWCC 2 cut(s) 466, 1180
BmgT120I GGNCC 3 cut(s) 296, 466, 1180
BmiI GGNNCC 4 cut(s) 68, 927, 1182, 1833
BmrFI CCNGG 3 cut(s) 1676, 1713, 1810
BmsI GCATC 5 cut(s) 87, 178, 495, 676, 1441
BpmI CTGGAG 2 cut(s) 662, 1116
Bpu10I CCTNAGC 1 cut(s) 751
Bpu1102I GCTNAGC 2 cut(s) 846, 1680
BpuEI CTTGAG 2 cut(s) 668, 1851
BpuMI CCSGG 1 cut(s) 1676
Bsa29I ATCGAT 1 cut(s) 823
BsaBI GATNNNNATC 2 cut(s) 729, 1506
BsaHI GRCGYC 2 cut(s) 237, 557
BsaJI CCNNGG 2 cut(s) 617, 1362
BsaWI WCCGGW 1 cut(s) 118
Bsc4I CCNNNNNNNGG 4 cut(s) 118, 475, 771, 1674
Bse1I ACTGG 5 cut(s) 480, 560, 645, 971, 1099
Bse21I CCTNAGG 1 cut(s) 879
Bse3DI GCAATG 2 cut(s) 1461, 1512
Bse8I GATNNNNATC 2 cut(s) 729, 1506
BseAI TCCGGA 1 cut(s) 118
BseBI CCWGG 2 cut(s) 1713, 1810
BseCI ATCGAT 1 cut(s) 823
BseDI CCNNGG 2 cut(s) 617, 1362
BseGI GGATG 8 cut(s) 193, 222, 510, 721, 781, 904, 1465, 1535
BseJI GATNNNNATC 2 cut(s) 729, 1506
BseLI CCNNNNNNNGG 4 cut(s) 118, 475, 771, 1674
BseMI GCAATG 2 cut(s) 1461, 1512
BseMII CTCAG 4 cut(s) 893, 935, 1047, 1694
BseNI ACTGG 5 cut(s) 480, 560, 645, 971, 1099
BseRI GAGGAG 2 cut(s) 1308, 1636
BsgI GTGCAG 1 cut(s) 1798
BshFI GGCC 2 cut(s) 111, 298
BshVI ATCGAT 1 cut(s) 823
BsiHKAI GWGCWC 2 cut(s) 1395, 1632
BsiSI CCGG 2 cut(s) 119, 1675
BslFI GGGAC 2 cut(s) 1115, 1166
BslI CCNNNNNNNGG 4 cut(s) 118, 475, 771, 1674
BsmAI GTCTC 2 cut(s) 201, 1524
BsmFI GGGAC 2 cut(s) 1115, 1166
BsnI GGCC 2 cut(s) 111, 298
Bsp1286I GDGCHC 4 cut(s) 1395, 1479, 1632, 1681
Bsp13I TCCGGA 1 cut(s) 118
Bsp1407I TGTACA 1 cut(s) 1221
Bsp143I GATC 8 cut(s) 33, 703, 820, 925, 969, 1213, 1565, 1570
Bsp1720I GCTNAGC 2 cut(s) 846, 1680
Bsp19I CCATGG 1 cut(s) 617
BspACI CCGC 4 cut(s) 29, 469, 979, 1545
BspANI GGCC 2 cut(s) 111, 298
BspCNI CTCAG 4 cut(s) 892, 934, 1046, 1693
BspDI ATCGAT 1 cut(s) 823
BspEI TCCGGA 1 cut(s) 118
BspLI GGNNCC 4 cut(s) 68, 927, 1182, 1833
BspMI ACCTGC 1 cut(s) 78
BspPI GGATC 6 cut(s) 698, 828, 920, 933, 977, 1573
BspQI GCTCTTC 1 cut(s) 507
BsrDI GCAATG 2 cut(s) 1461, 1512
BsrGI TGTACA 1 cut(s) 1221
BsrI ACTGG 5 cut(s) 480, 560, 645, 971, 1099
BssECI CCNNGG 2 cut(s) 617, 1362
BssMI GATC 8 cut(s) 33, 703, 820, 925, 969, 1213, 1565, 1570
BssNI GRCGYC 2 cut(s) 237, 557
BssT1I CCWWGG 2 cut(s) 617, 1362
Bst2UI CCWGG 2 cut(s) 1713, 1810
Bst4CI ACNGT 5 cut(s) 797, 1106, 1172, 1315, 1754
Bst6I CTCTTC 3 cut(s) 279, 507, 787
BstACI GRCGYC 2 cut(s) 237, 557
BstAUI TGTACA 1 cut(s) 1221
BstC8I GCNNGC 2 cut(s) 665, 698
BstDEI CTNAG 7 cut(s) 676, 751, 846, 879, 921, 1033, 1680
BstDSI CCRYGG 1 cut(s) 617
BstF5I GGATG 8 cut(s) 193, 222, 510, 721, 781, 904, 1465, 1535
BstH2I RGCGCY 1 cut(s) 1858
BstHHI GCGC 4 cut(s) 519, 1320, 1552, 1857
BstKTI GATC 8 cut(s) 36, 706, 823, 928, 972, 1216, 1568, 1573
BstMAI GTCTC 2 cut(s) 201, 1524
BstMBI GATC 8 cut(s) 33, 703, 820, 925, 969, 1213, 1565, 1570
BstMWI GCNNNNNNNGC 5 cut(s) 49, 514, 842, 1384, 1801
BstNI CCWGG 2 cut(s) 1713, 1810
BstNSI RCATGY 1 cut(s) 1545
BstSCI CCNGG 3 cut(s) 1674, 1711, 1808
BstSFI CTRYAG 2 cut(s) 909, 1525
BstX2I RGATCY 2 cut(s) 925, 1570
BstXI CCANNNNNNTGG 1 cut(s) 1562
BstYI RGATCY 2 cut(s) 925, 1570
Bsu15I ATCGAT 1 cut(s) 823
Bsu36I CCTNAGG 1 cut(s) 879
BsuRI GGCC 2 cut(s) 111, 298
BsuTUI ATCGAT 1 cut(s) 823
BtgI CCRYGG 1 cut(s) 617
BtgZI GCGATG 1 cut(s) 64
BtsCI GGATG 8 cut(s) 193, 222, 510, 721, 781, 904, 1465, 1535
BtsIMutI CAGTG 4 cut(s) 473, 802, 1041, 1750
BveI ACCTGC 1 cut(s) 78
Cac8I GCNNGC 2 cut(s) 665, 698
CfoI GCGC 4 cut(s) 519, 1320, 1552, 1857
Cfr13I GGNCC 3 cut(s) 296, 466, 1180
ClaI ATCGAT 1 cut(s) 823
CseI GACGC 3 cut(s) 245, 565, 1801
CsiI ACCWGGT 1 cut(s) 1711
Csp6I GTAC 3 cut(s) 253, 1222, 1846
CspCI CAANNNNNGTGG 2 cut(s) 1443, 1478
CviQI GTAC 3 cut(s) 253, 1222, 1846
DdeI CTNAG 7 cut(s) 676, 751, 846, 879, 921, 1033, 1680
DpnI GATC 8 cut(s) 35, 705, 822, 927, 971, 1215, 1567, 1572
DpnII GATC 8 cut(s) 33, 703, 820, 925, 969, 1213, 1565, 1570
Eam1104I CTCTTC 3 cut(s) 279, 507, 787
EarI CTCTTC 3 cut(s) 279, 507, 787
EciI GGCGGA 1 cut(s) 44
Eco130I CCWWGG 2 cut(s) 617, 1362
Eco147I AGGCCT 1 cut(s) 111
Eco24I GRGCYC 2 cut(s) 1479, 1681
Eco47I GGWCC 2 cut(s) 466, 1180
Eco57I CTGAAG 7 cut(s) 41, 531, 568, 1068, 1095, 1262, 1826
Eco81I CCTNAGG 1 cut(s) 879
EcoRII CCWGG 2 cut(s) 1711, 1808
EcoT14I CCWWGG 2 cut(s) 617, 1362
EcoT38I GRGCYC 2 cut(s) 1479, 1681
ErhI CCWWGG 2 cut(s) 617, 1362
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 2 cut(s) 1115, 1166
FbaI TGATCA 1 cut(s) 1213
FblI GTMKAC 1 cut(s) 1790
Fnu4HI GCNGC 1 cut(s) 979
FokI GGATG 8 cut(s) 200, 229, 517, 728, 788, 911, 1472, 1522
FriOI GRGCYC 2 cut(s) 1479, 1681
Fsp4HI GCNGC 1 cut(s) 979
FspBI CTAG 3 cut(s) 954, 1379, 1518
FspI TGCGCA 1 cut(s) 1319
GlaI GCGC 4 cut(s) 518, 1319, 1551, 1856
GluI GCNGC 1 cut(s) 979
GsuI CTGGAG 2 cut(s) 662, 1116
HaeII RGCGCY 1 cut(s) 1858
HaeIII GGCC 2 cut(s) 111, 298
HapII CCGG 2 cut(s) 119, 1675
HgaI GACGC 3 cut(s) 245, 565, 1801
HhaI GCGC 4 cut(s) 519, 1320, 1552, 1857
Hin1I GRCGYC 2 cut(s) 237, 557
Hin6I GCGC 4 cut(s) 517, 1318, 1550, 1855
HinP1I GCGC 4 cut(s) 517, 1318, 1550, 1855
HincII GTYRAC 3 cut(s) 805, 889, 1791
HindII GTYRAC 3 cut(s) 805, 889, 1791
HindIII AAGCTT 4 cut(s) 1274, 1286, 1418, 1437
HinfI GANTC 7 cut(s) 47, 194, 413, 628, 761, 779, 1612
HpaI GTTAAC 2 cut(s) 805, 889
HpaII CCGG 2 cut(s) 119, 1675
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 6 cut(s) 658, 805, 889, 1465, 1791, 1848
Hpy8I GTNNAC 6 cut(s) 658, 805, 889, 1465, 1791, 1848
Hpy99I CGWCG 1 cut(s) 1795
HpyAV CCTTC 6 cut(s) 16, 287, 1070, 1222, 1340, 1368
HpyCH4III ACNGT 5 cut(s) 797, 1106, 1172, 1315, 1754
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 514, 842, 1384, 1801
HpyF3I CTNAG 7 cut(s) 676, 751, 846, 879, 921, 1033, 1680
Hsp92I GRCGYC 2 cut(s) 237, 557
HspAI GCGC 4 cut(s) 517, 1318, 1550, 1855
Kpn2I TCCGGA 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 1213
KspAI GTTAAC 2 cut(s) 805, 889
Kzo9I GATC 8 cut(s) 33, 703, 820, 925, 969, 1213, 1565, 1570
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 5 cut(s) 755, 1398, 1557, 1651, 1831
LweI GCATC 5 cut(s) 87, 178, 495, 676, 1441
MabI ACCWGGT 1 cut(s) 1711
MaeI CTAG 3 cut(s) 954, 1379, 1518
MaeIII GTNAC 7 cut(s) 98, 329, 410, 553, 1000, 1106, 1520
MalI GATC 8 cut(s) 35, 705, 822, 927, 971, 1215, 1567, 1572
MboI GATC 8 cut(s) 33, 703, 820, 925, 969, 1213, 1565, 1570
MfeI CAATTG 1 cut(s) 1266
MflI RGATCY 2 cut(s) 925, 1570
MhlI GDGCHC 4 cut(s) 1395, 1479, 1632, 1681
MlyI GAGTC 5 cut(s) 203, 407, 755, 773, 1621
MroI TCCGGA 1 cut(s) 118
MroXI GAANNNNTTC 2 cut(s) 128, 1080
MseI TTAA 4 cut(s) 168, 804, 888, 1116
MslI CAYNNNNRTG 5 cut(s) 406, 527, 1034, 1540, 1755
MspI CCGG 2 cut(s) 119, 1675
MspR9I CCNGG 3 cut(s) 1676, 1713, 1810
MunI CAATTG 1 cut(s) 1266
MvaI CCWGG 2 cut(s) 1713, 1810
MwoI GCNNNNNNNGC 5 cut(s) 49, 514, 842, 1384, 1801
NciI CCSGG 1 cut(s) 1676
NcoI CCATGG 1 cut(s) 617
NdeII GATC 8 cut(s) 33, 703, 820, 925, 969, 1213, 1565, 1570
NlaIV GGNNCC 4 cut(s) 68, 927, 1182, 1833
NmuCI GTSAC 2 cut(s) 410, 553
NsbI TGCGCA 1 cut(s) 1319
NspI RCATGY 1 cut(s) 1545
PceI AGGCCT 1 cut(s) 111
PciSI GCTCTTC 1 cut(s) 507
PdmI GAANNNNTTC 2 cut(s) 128, 1080
PfeI GAWTC 2 cut(s) 47, 628
PfoI TCCNGGA 1 cut(s) 1808
PkrI GCNGC 1 cut(s) 980
PleI GAGTC 5 cut(s) 202, 407, 755, 773, 1620
PpsI GAGTC 5 cut(s) 202, 407, 755, 773, 1620
Psp6I CCWGG 2 cut(s) 1711, 1808
PspGI CCWGG 2 cut(s) 1711, 1808
PspN4I GGNNCC 4 cut(s) 68, 927, 1182, 1833
PspPI GGNCC 3 cut(s) 296, 466, 1180
PsuI RGATCY 2 cut(s) 925, 1570
RsaI GTAC 3 cut(s) 254, 1223, 1847
RsaNI GTAC 3 cut(s) 253, 1222, 1846
RseI CAYNNNNRTG 5 cut(s) 406, 527, 1034, 1540, 1755
SalI GTCGAC 1 cut(s) 1789
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 4 cut(s) 168, 804, 888, 1116
SatI GCNGC 1 cut(s) 979
Sau3AI GATC 8 cut(s) 33, 703, 820, 925, 969, 1213, 1565, 1570
Sau96I GGNCC 3 cut(s) 296, 466, 1180
SchI GAGTC 5 cut(s) 203, 407, 755, 773, 1621
ScrFI CCNGG 3 cut(s) 1676, 1713, 1810
SduI GDGCHC 4 cut(s) 1395, 1479, 1632, 1681
SexAI ACCWGGT 1 cut(s) 1711
SfaNI GCATC 5 cut(s) 87, 178, 495, 676, 1441
SfcI CTRYAG 2 cut(s) 909, 1525
SinI GGWCC 2 cut(s) 466, 1180
SmiMI CAYNNNNRTG 5 cut(s) 406, 527, 1034, 1540, 1755
SmlI CTYRAG 2 cut(s) 683, 1866
SmoI CTYRAG 2 cut(s) 683, 1866
SseBI AGGCCT 1 cut(s) 111
SsiI CCGC 4 cut(s) 29, 469, 979, 1545
SspI AATATT 1 cut(s) 1471
SspMI CTAG 3 cut(s) 954, 1379, 1518
StuI AGGCCT 1 cut(s) 111
StyD4I CCNGG 3 cut(s) 1674, 1711, 1808
StyI CCWWGG 2 cut(s) 617, 1362
TaaI ACNGT 5 cut(s) 797, 1106, 1172, 1315, 1754
TaqI TCGA 4 cut(s) 823, 1016, 1372, 1790
TatI WGTACW 2 cut(s) 1221, 1845
TauI GCSGC 1 cut(s) 981
TfiI GAWTC 2 cut(s) 47, 628
Tru1I TTAA 4 cut(s) 168, 804, 888, 1116
Tru9I TTAA 4 cut(s) 168, 804, 888, 1116
TscAI CASTG 4 cut(s) 480, 802, 1041, 1757
TseFI GTSAC 2 cut(s) 410, 553
Tsp45I GTSAC 2 cut(s) 410, 553
TspRI CASTG 4 cut(s) 480, 802, 1041, 1757
VpaK11BI GGWCC 2 cut(s) 466, 1180
XapI RAATTY 4 cut(s) 337, 1018, 1142, 1689
XceI RCATGY 1 cut(s) 1545
XmiI GTMKAC 1 cut(s) 1790
XmnI GAANNNNTTC 2 cut(s) 128, 1080
XspI CTAG 3 cut(s) 954, 1379, 1518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.