Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0003652

Physical Location & Seq

Genomic Coordinates Forward (+)

6926043 .. 6926894

Gene Structure 852 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g10360.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGATGCAATGGGGTAGAAGACTTAAGTGCTTTCAGTACATAATAATTTACTCAAGAAGCAGCATCAGGGACACATCCACATGCGGTGCCCTCCACTCCATCGGATCAGATCTCACACGCATGAAACTAAGATCGAACGGGCCTCAATACAGTCCAATGAGGAGTGAGCAGACTGCTTCAAAGACAAAGGAGCATCCAAACACTCCCACAAGCAGGGCCGAGCCGGTGACTTCAAGGGAGAGCTTCGTGCCGGGAAATGATAACGGCAGGGTAAATGGCAACACTGTTTACTGTGATGATGGGGACAGAGTGATCTGCAGTGGGAGGTCTAGCCAAGACAAGCGGTCGAGGAAAACAAGCACGGTGAAGGAGCCAATTCTTCAGTACTTGAAGCGCCAGAAGTCTCAAGCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000785 GO:0000793 GO:0000794 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006139 GO:0006259 GO:0006310 GO:0006725 GO:0006807 GO:0006996 GO:0007049 GO:0007059 GO:0007127 GO:0007129 GO:0007131 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009554 GO:0009555 GO:0009556 GO:0009987 GO:0016043 GO:0019953 GO:0022402 GO:0022414 GO:0022607 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0034293 GO:0034641 GO:0035825 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043934 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0044703 GO:0045132 GO:0045143 GO:0046483 GO:0048229 GO:0048236 GO:0048285 GO:0048856 GO:0048869 GO:0051026 GO:0051276 GO:0051321 GO:0051704 GO:0061982 GO:0070013 GO:0070192 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:0140013 GO:1901360 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HORMA

Protein Analysis

139

Amino Acids

15.59

Weight (kDa)

10.02

Isoelectric Point (pI)

52.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003652)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67370
fragaria_vesca	FvH4_2g22740 FvH4_4g23791 FvH4_4g23791 FvH4_4g23800
malus_domestica	MD13G1118700.v1.1 MD16G1118900.v1.1
prunus_persica	Prupe.1G226200_v2.0.a1 Prupe.1G226200_v2.0.a1
pyrus_communis	pycom13g10360 pycom16g10180
rosa_chinensis	RchiOBHm_Chr4g0430291 RchiOBHm_Chr4g0430321 RchiOBHm_Chr4g0430341
rosa_laevigata	RLG00000006983 RLG00000006985 RLG00000006987
rosa_multiflora	Rmu_co8441339.1_g000001 Rmu_sc0000131.1_g000059 Rmu_sc0001089.1_g000027 Rmu_sc0002248.1_g000047 Rmu_sc0020995.1_g000013
rosa_roxburghii	Rroxscaffold_5G00372090 Rroxscaffold_5G00372110
rosa_rugosa	Rorug04G0242500 Rorug04G0242600
rosa_samantha	Rh4AG226000 Rh4AG298900 Rh4BG305500 Rh4CG240300 Rh4CG321000 Rh4CG321400
rosa_wichuraiana	Rw4G025920 Rw4G025930 Rw4G025940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	86
AciI	CCGC	2 cut(s)	84, 343
AclWI	GGATC	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	365
AfaI	GTAC	2 cut(s)	38, 386
AfiI	CCNNNNNNNGG	1 cut(s)	213
AflII	CTTAAG	1 cut(s)	23
AgsI	TTSAA	3 cut(s)	180, 234, 391
AhdI	GACNNNNNGTC	1 cut(s)	343
AluBI	AGCT	1 cut(s)	243
AluI	AGCT	1 cut(s)	243
Alw26I	GTCTC	1 cut(s)	408
AlwI	GGATC	1 cut(s)	112
AoxI	GGCC	2 cut(s)	140, 216
ApeKI	GCWGC	1 cut(s)	60
AspLEI	GCGC	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	140, 216
AsuC2I	CCSGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	238, 376
BaeGI	GKGCMC	1 cut(s)	91
BanI	GGYRCC	1 cut(s)	86
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	107, 293
BceAI	ACGGC	2 cut(s)	280, 395
BcnI	CCSGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	408
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	316
BfoI	RGCGCY	1 cut(s)	397
BfrI	CTTAAG	1 cut(s)	23
BglII	AGATCT	1 cut(s)	109
BisI	GCNGC	1 cut(s)	61
BlsI	GCNGC	1 cut(s)	62
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	1 cut(s)	252
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	2 cut(s)	140, 216
BmiI	GGNNCC	2 cut(s)	88, 372
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	72, 202
BpiI	GAAGAC	1 cut(s)	25
BpuEI	CTTGAG	2 cut(s)	37, 390
BpuMI	CCSGG	1 cut(s)	252
Bsc4I	CCNNNNNNNGG	1 cut(s)	213
Bse118I	RCCGGY	1 cut(s)	223
Bse3DI	GCAATG	1 cut(s)	14
BseGI	GGATG	2 cut(s)	74, 193
BseLI	CCNNNNNNNGG	1 cut(s)	213
BseMI	GCAATG	1 cut(s)	14
BseRI	GAGGAG	1 cut(s)	175
BseSI	GKGCMC	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	72
Bsh1285I	CGRYCG	1 cut(s)	347
BshFI	GGCC	2 cut(s)	142, 218
BshNI	GGYRCC	1 cut(s)	86
BsiEI	CGRYCG	1 cut(s)	347
BsiSI	CCGG	2 cut(s)	224, 251
BslFI	GGGAC	2 cut(s)	83, 317
BslI	CCNNNNNNNGG	1 cut(s)	213
BsmAI	GTCTC	1 cut(s)	408
BsmFI	GGGAC	2 cut(s)	83, 317
BsnI	GGCC	2 cut(s)	142, 218
Bsp1286I	GDGCHC	1 cut(s)	91
Bsp143I	GATC	4 cut(s)	104, 109, 131, 312
BspACI	CCGC	2 cut(s)	84, 343
BspANI	GGCC	2 cut(s)	142, 218
BspLI	GGNNCC	2 cut(s)	88, 372
BspMAI	CTGCAG	1 cut(s)	320
BspPI	GGATC	1 cut(s)	112
BspT107I	GGYRCC	1 cut(s)	86
BspTI	CTTAAG	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	14
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssMI	GATC	4 cut(s)	104, 109, 131, 312
Bst4CI	ACNGT	4 cut(s)	152, 286, 293, 364
BstAFI	CTTAAG	1 cut(s)	23
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	74, 193
BstH2I	RGCGCY	1 cut(s)	397
BstHHI	GCGC	1 cut(s)	396
BstKTI	GATC	4 cut(s)	107, 112, 134, 315
BstMAI	GTCTC	1 cut(s)	408
BstMBI	GATC	4 cut(s)	104, 109, 131, 312
BstMCI	CGRYCG	1 cut(s)	347
BstNSI	RCATGY	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	250
BstSFI	CTRYAG	1 cut(s)	316
BstSLI	GKGCMC	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	72
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	142, 218
BtsCI	GGATG	2 cut(s)	74, 193
BtsI	GCAGTG	1 cut(s)	325
BtsIMutI	CAGTG	2 cut(s)	282, 325
CfoI	GCGC	1 cut(s)	396
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	140, 216
Csp6I	GTAC	2 cut(s)	37, 385
CviAII	CATG	2 cut(s)	81, 121
CviJI	RGCY	7 cut(s)	142, 218, 223, 243, 333, 373, 410
CviKI_1	RGCY	7 cut(s)	142, 218, 223, 243, 333, 373, 410
CviQI	GTAC	2 cut(s)	37, 385
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	4 cut(s)	106, 111, 133, 314
DpnII	GATC	4 cut(s)	104, 109, 131, 312
DriI	GACNNNNNGTC	1 cut(s)	343
Eam1105I	GACNNNNNGTC	1 cut(s)	343
Eco57I	CTGAAG	1 cut(s)	365
FaeI	CATG	2 cut(s)	84, 124
FaiI	YATR	3 cut(s)	41, 82, 122
FaqI	GGGAC	2 cut(s)	83, 317
FatI	CATG	2 cut(s)	80, 120
Fnu4HI	GCNGC	1 cut(s)	61
FokI	GGATG	2 cut(s)	61, 180
Fsp4HI	GCNGC	1 cut(s)	61
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	1 cut(s)	395
GluI	GCNGC	1 cut(s)	61
HaeII	RGCGCY	1 cut(s)	397
HaeIII	GGCC	2 cut(s)	142, 218
HapII	CCGG	2 cut(s)	224, 251
HhaI	GCGC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	84, 124
Hin6I	GCGC	1 cut(s)	394
HinP1I	GCGC	1 cut(s)	394
HpaII	CCGG	2 cut(s)	224, 251
HphI	GGTGA	2 cut(s)	238, 376
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	3 cut(s)	104, 109, 416
Hpy188III	TCNNGA	1 cut(s)	54
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	4 cut(s)	152, 286, 293, 364
HpyCH4V	TGCA	2 cut(s)	7, 318
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	2 cut(s)	84, 124
HspAI	GCGC	1 cut(s)	394
Kzo9I	GATC	4 cut(s)	104, 109, 131, 312
LmnI	GCTCC	2 cut(s)	190, 370
LpnPI	CCDG	6 cut(s)	52, 199, 237, 253, 264, 410
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	2 cut(s)	72, 202
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	4 cut(s)	106, 111, 133, 314
MboI	GATC	4 cut(s)	104, 109, 131, 312
MboII	GAAGA	2 cut(s)	30, 371
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	91
MluCI	AATT	2 cut(s)	45, 375
MnlI	CCTC	5 cut(s)	101, 153, 153, 318, 342
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	2 cut(s)	79, 119
MspCI	CTTAAG	1 cut(s)	23
MspI	CCGG	2 cut(s)	224, 251
MspR9I	CCNGG	1 cut(s)	252
NciI	CCSGG	1 cut(s)	252
NdeII	GATC	4 cut(s)	104, 109, 131, 312
NlaIII	CATG	2 cut(s)	84, 124
NlaIV	GGNNCC	2 cut(s)	88, 372
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	62
PspN4I	GGNNCC	2 cut(s)	88, 372
PspPI	GGNCC	2 cut(s)	140, 216
PstI	CTGCAG	1 cut(s)	320
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	2 cut(s)	38, 386
RsaNI	GTAC	2 cut(s)	37, 385
RseI	CAYNNNNRTG	2 cut(s)	79, 119
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	61
Sau3AI	GATC	4 cut(s)	104, 109, 131, 312
Sau96I	GGNCC	2 cut(s)	140, 216
ScaI	AGTACT	1 cut(s)	386
ScrFI	CCNGG	1 cut(s)	252
SduI	GDGCHC	1 cut(s)	91
SetI	ASST	2 cut(s)	245, 329
SfaNI	GCATC	2 cut(s)	72, 202
SfcI	CTRYAG	1 cut(s)	316
SmiMI	CAYNNNNRTG	2 cut(s)	79, 119
SmlI	CTYRAG	3 cut(s)	23, 52, 405
SmoI	CTYRAG	3 cut(s)	23, 52, 405
Sse9I	AATT	2 cut(s)	45, 375
SsiI	CCGC	2 cut(s)	84, 343
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	4 cut(s)	152, 286, 293, 364
TaqI	TCGA	2 cut(s)	134, 347
TasI	AATT	2 cut(s)	45, 375
TatI	WGTACW	2 cut(s)	36, 384
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	289, 325
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	1 cut(s)	137
TspRI	CASTG	2 cut(s)	289, 325
Vha464I	CTTAAG	1 cut(s)	23
XceI	RCATGY	1 cut(s)	84
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.