FvH4_2g35690

WD domain, G-beta repeat

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
26319170 .. 26320953
1784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g35690.t1

Sequence Viewer

Length: 1335 bp
ATGGAGTTAGAATTCTACCGCAGGAATTCTCTGTTTCGCTTAATAGACACCGAAAGAAATATTGTACTAGAGTCGCCCAATGACCTCCATAACATCAACACCAATGACGAAGTGTATGATGATGAAGATCTCCAATTCAGCCCTTCAATGTCTTCAAGCCCCTACATAACTACAATGCTTACACTAATGCCACCCCCAAGCCCGGAGTCCCCATGGACCCTCTCCCCTCACCAAACCCCATCTCCTTCACTCCTTTACCAATGCATTGCATCCCTCTATCGCCCCGAAGGCTCCATCTCCTCCATTGCAGTCTCAAAGCAGCAAGGAGTGGTCTTTGCTGGCTCAGAGAGTACCCGAATCCATGTGTGGAGACAACCAGACCACAATGAATACGGATGTCTCAAGGCTACTTCAGGTGAGGTACGAGCCATTGCAGTTCATGGCAACATGCTCTTCACTGCACACAAAGACCACAAAATCCGAATGTGGAACTTCACGGTCACAGATCACATTTTCAAGTCCAAAAAGGTCTCTTCTTTCCCTAAAACAAGCTCGTTCACTTTATTTTCAAGATTTACAAACACCAAACAGCAACACAAAGAATGCATTTCCTGCTTGGCATATTATCAAACCGATGGTCTTGTCTATACTGGCTCCCATGACAGAACTGTCAAAGCGTGGCGACTTATAACCAATCACTGTGTGGACTCATTTGTGGCGCATGAAGACAATGTGAATGCAATAGTGGTGAACCAAGATGATGGGTGCGTTTTCACTTGCTCCTCAGATGGTTCTGTCAAAATCTGGAGAAGGGTATTCAGAGAAAACTCTCACACTCTCACCATGACTCTCAAATCCCAATTCCCAAATTCCCACCACCCTATAAACGCCATAGCCTTAAACGTATCATCCAACTCTTGCTTCCTCTACTCTGGTTCTTCAGATGGAACCATTAACTTTTGGGAGAAGGAGAAACTGACACACAGGTTTAACCATGGTGGGTTTTTACAAGGCCACCATTTTTCTGTTATGTGCTTAGTGGCCATTGAGAAGTTGATATTCAGTGGATCAGAGGATACTACAATTAGGGTTTGGAGGAGGGAAGAAGAGGGTTGTTTTCATGAGTGTTTGGCTGTGTTAGAGGGGCATAGAGGCCCTGTGAGGTGTTTGGCTGCTTGTTTAGAGATTGACACAGTTGTGAAAGGGTTTCTGGTTTATAGTGCGAGTTTGGATCAGACTTTTAAGGTGTGGAGGGTTAAGGTCTCGCCGGAAGAGGGAATGTGGTTGAACTCTCATATGGATCGGAGGAACAATGGGATCGAGGATGGAATGTGA

Protein Analysis

445

Amino Acids

50.49

Weight (kDa)

6.42

Isoelectric Point (pI)

52.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_CDC20-Fz PF24807 90 - 172 9.7e-06 CDC20/Fizzy WD40 domain
WD40_WDHD1_1st PF24817 92 - 190 2e-07 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 96 - 282 1.6e-21 WDR5 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 108 - 271 9.5e-11 TEP-1 second beta-propeller
Beta-prop_ACSF4 PF13570 193 - 365 2.2e-06 Beta-alanine-activating enzyme, beta-propeller
WDR55 PF24796 193 - 420 5.3e-17 WDR55
WD40_CDC20-Fz PF24807 196 - 330 3.5e-09 CDC20/Fizzy WD40 domain
WD40_Gbeta PF25391 197 - 417 1.7e-07 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 197 - 283 6.6e-09 THOC3 beta-propeller domain
Beta-prop_EML PF23409 197 - 391 9.8e-11 Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_WDR3_1st PF25173 197 - 270 2e-13 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 199 - 323 6.7e-14 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 199 - 324 8.9e-13 WDR3 second beta-propeller domain
WD40_WDHD1_1st PF24817 200 - 286 6.7e-07 WDHD1 first WD40 domain
Beta-prop_EML_2 PF23414 205 - 345 1.5e-09 Echinoderm microtubule-associated protein second beta-propeller
WD40 PF00400 233 - 269 1e-06 WD domain, G-beta repeat
WD40_WDHD1_1st PF24817 240 - 421 3.8e-12 WDHD1 first WD40 domain
Beta-prop_WDR5 PF25175 282 - 420 3.3e-14 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 290 - 420 1.8e-13 WDR3 first beta-propeller domain
WD40_Prp19 PF24814 294 - 391 8.4e-08 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 298 - 370 3.2e-06 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 299 - 374 6.6e-07 THOC3 beta-propeller domain
Beta-prop_TEP1_2nd PF25047 306 - 422 2.3e-10 TEP-1 second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 689
AasI GACNNNNNNGTC 1 cut(s) 668
AciI CCGC 1 cut(s) 19
AclWI GGATC 4 cut(s) 1075, 1239, 1308, 1325
AcoI YGGCCR 1 cut(s) 1041
AcsI RAATTY 3 cut(s) 11, 25, 868
AcuI CTGAAG 2 cut(s) 396, 924
AdeI CACNNNGTG 1 cut(s) 703
AfaI GTAC 3 cut(s) 66, 352, 423
AfiI CCNNNNNNNGG 2 cut(s) 202, 1274
AgsI TTSAA 5 cut(s) 147, 156, 517, 570, 1288
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AleI CACNNNNGTG 1 cut(s) 1196
AluBI AGCT 1 cut(s) 552
AluI AGCT 1 cut(s) 552
Alw26I GTCTC 5 cut(s) 316, 364, 404, 535, 1267
AlwI GGATC 4 cut(s) 1075, 1239, 1308, 1325
AoxI GGCC 3 cut(s) 1012, 1041, 1153
ApeKI GCWGC 2 cut(s) 319, 1172
ApoI RAATTY 3 cut(s) 11, 25, 868
ArsI GACNNNNNNTTYG 2 cut(s) 622, 654
AspLEI GCGC 1 cut(s) 721
AspS9I GGNCC 2 cut(s) 216, 1154
AsuC2I CCSGG 1 cut(s) 203
AsuHPI GGTGA 4 cut(s) 221, 428, 760, 832
AvaII GGWCC 1 cut(s) 216
BalI TGGCCA 1 cut(s) 1043
BbsI GAAGAC 2 cut(s) 144, 732
BbvI GCAGC 2 cut(s) 331, 1159
BccI CCATC 7 cut(s) 247, 302, 629, 755, 782, 938, 1319
BciVI GTATCC 1 cut(s) 1069
BcnI CCSGG 1 cut(s) 203
BcoDI GTCTC 5 cut(s) 316, 364, 404, 535, 1267
BfaI CTAG 1 cut(s) 68
BfuI GTATCC 1 cut(s) 1069
BglI GCCNNNNNGGC 1 cut(s) 288
BglII AGATCT 1 cut(s) 127
BisI GCNGC 2 cut(s) 320, 1173
BlsI GCNGC 2 cut(s) 321, 1174
Bme1390I CCNGG 1 cut(s) 203
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 2 cut(s) 216, 1154
BmiI GGNNCC 4 cut(s) 218, 292, 655, 949
BmrFI CCNGG 1 cut(s) 203
BmsI GCATC 1 cut(s) 278
BpiI GAAGAC 2 cut(s) 144, 732
BpmI CTGGAG 1 cut(s) 826
BpuEI CTTGAG 1 cut(s) 386
BpuMI CCSGG 1 cut(s) 203
BsaBI GATNNNNATC 1 cut(s) 126
BsaI GGTCTC 2 cut(s) 535, 1267
BsaJI CCNNGG 2 cut(s) 212, 994
BsaXI ACNNNNNCTCC 2 cut(s) 226, 256
Bsc4I CCNNNNNNNGG 2 cut(s) 202, 1274
Bse1I ACTGG 1 cut(s) 655
Bse3DI GCAATG 3 cut(s) 264, 303, 429
Bse8I GATNNNNATC 1 cut(s) 126
BseDI CCNNGG 2 cut(s) 212, 994
BseGI GGATG 4 cut(s) 269, 401, 908, 1330
BseJI GATNNNNATC 1 cut(s) 126
BseLI CCNNNNNNNGG 2 cut(s) 202, 1274
BseMI GCAATG 3 cut(s) 264, 303, 429
BseMII CTCAG 2 cut(s) 357, 798
BseNI ACTGG 1 cut(s) 655
BseRI GAGGAG 3 cut(s) 289, 772, 1111
BseXI GCAGC 2 cut(s) 331, 1159
BsgI GTGCAG 1 cut(s) 444
BshFI GGCC 3 cut(s) 1014, 1043, 1155
BsiSI CCGG 2 cut(s) 203, 1268
BslFI GGGAC 1 cut(s) 193
BslI CCNNNNNNNGG 2 cut(s) 202, 1274
BsmAI GTCTC 5 cut(s) 316, 364, 404, 535, 1267
BsmFI GGGAC 1 cut(s) 193
BsmI GAATGC 2 cut(s) 608, 742
BsnI GGCC 3 cut(s) 1014, 1043, 1155
Bso31I GGTCTC 2 cut(s) 535, 1267
Bsp143I GATC 6 cut(s) 127, 505, 1067, 1231, 1300, 1317
Bsp19I CCATGG 2 cut(s) 212, 994
BspACI CCGC 1 cut(s) 19
BspANI GGCC 3 cut(s) 1014, 1043, 1155
BspCNI CTCAG 2 cut(s) 356, 797
BspHI TCATGA 1 cut(s) 1120
BspLI GGNNCC 4 cut(s) 218, 292, 655, 949
BspPI GGATC 4 cut(s) 1075, 1239, 1308, 1325
BspQI GCTCTTC 1 cut(s) 458
BspTNI GGTCTC 2 cut(s) 535, 1267
BsrDI GCAATG 3 cut(s) 264, 303, 429
BsrI ACTGG 1 cut(s) 655
BssECI CCNNGG 2 cut(s) 212, 994
BssMI GATC 6 cut(s) 127, 505, 1067, 1231, 1300, 1317
BssT1I CCWWGG 2 cut(s) 212, 994
Bst4CI ACNGT 4 cut(s) 499, 670, 701, 1195
Bst6I CTCTTC 4 cut(s) 458, 538, 1101, 1266
BstAPI GCANNNNNTGC 1 cut(s) 612
BstC8I GCNNGC 1 cut(s) 340
BstDEI CTNAG 3 cut(s) 343, 784, 1036
BstDSI CCRYGG 2 cut(s) 212, 994
BstF5I GGATG 4 cut(s) 269, 401, 908, 1330
BstHHI GCGC 1 cut(s) 721
BstKTI GATC 6 cut(s) 130, 508, 1070, 1234, 1303, 1320
BstMAI GTCTC 5 cut(s) 316, 364, 404, 535, 1267
BstMBI GATC 6 cut(s) 127, 505, 1067, 1231, 1300, 1317
BstMWI GCNNNNNNNGC 2 cut(s) 288, 612
BstNSI RCATGY 1 cut(s) 451
BstSCI CCNGG 1 cut(s) 201
BstV1I GCAGC 2 cut(s) 331, 1159
BstV2I GAAGAC 2 cut(s) 144, 732
BstX2I RGATCY 1 cut(s) 127
BstXI CCANNNNNNTGG 1 cut(s) 761
BstYI RGATCY 1 cut(s) 127
BsuI GTATCC 1 cut(s) 1069
BsuRI GGCC 3 cut(s) 1014, 1043, 1155
BtgI CCRYGG 2 cut(s) 212, 994
BtsCI GGATG 4 cut(s) 269, 401, 908, 1330
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 456, 697, 1069
Cac8I GCNNGC 1 cut(s) 340
CciI TCATGA 1 cut(s) 1120
CfoI GCGC 1 cut(s) 721
Cfr13I GGNCC 2 cut(s) 216, 1154
Csp6I GTAC 3 cut(s) 65, 351, 422
CviAII CATG 9 cut(s) 213, 362, 440, 448, 659, 722, 844, 995, 1121
CviQI GTAC 3 cut(s) 65, 351, 422
DdeI CTNAG 3 cut(s) 343, 784, 1036
DpnI GATC 6 cut(s) 129, 507, 1069, 1233, 1302, 1319
DpnII GATC 6 cut(s) 127, 505, 1067, 1231, 1300, 1317
DraIII CACNNNGTG 1 cut(s) 703
DrdI GACNNNNNNGTC 1 cut(s) 668
DseDI GACNNNNNNGTC 1 cut(s) 668
EaeI YGGCCR 1 cut(s) 1041
Eam1104I CTCTTC 4 cut(s) 458, 538, 1101, 1266
EarI CTCTTC 4 cut(s) 458, 538, 1101, 1266
Eco130I CCWWGG 2 cut(s) 212, 994
Eco31I GGTCTC 2 cut(s) 535, 1267
Eco47I GGWCC 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 396, 924
EcoO109I RGGNCCY 1 cut(s) 1154
EcoRI GAATTC 2 cut(s) 11, 25
EcoT14I CCWWGG 2 cut(s) 212, 994
EcoT22I ATGCAT 2 cut(s) 266, 608
ErhI CCWWGG 2 cut(s) 212, 994
FaeI CATG 9 cut(s) 216, 365, 443, 451, 662, 725, 847, 998, 1124
FaqI GGGAC 1 cut(s) 193
FatI CATG 9 cut(s) 212, 361, 439, 447, 658, 721, 843, 994, 1120
FauNDI CATATG 1 cut(s) 1296
Fnu4HI GCNGC 2 cut(s) 320, 1173
FokI GGATG 3 cut(s) 256, 408, 895
Fsp4HI GCNGC 2 cut(s) 320, 1173
FspBI CTAG 1 cut(s) 68
GlaI GCGC 1 cut(s) 720
GluI GCNGC 2 cut(s) 320, 1173
GsuI CTGGAG 1 cut(s) 826
HaeIII GGCC 3 cut(s) 1014, 1043, 1155
HapII CCGG 2 cut(s) 203, 1268
HhaI GCGC 1 cut(s) 721
Hin1II CATG 9 cut(s) 216, 365, 443, 451, 662, 725, 847, 998, 1124
Hin6I GCGC 1 cut(s) 719
HinP1I GCGC 1 cut(s) 719
HinfI GANTC 5 cut(s) 71, 206, 357, 707, 847
HpaII CCGG 2 cut(s) 203, 1268
HphI GGTGA 4 cut(s) 221, 428, 760, 832
Hpy166II GTNNAC 3 cut(s) 558, 706, 751
Hpy188I TCNGA 8 cut(s) 346, 482, 787, 821, 943, 1072, 1236, 1305
Hpy188III TCNNGA 3 cut(s) 570, 805, 1121
Hpy8I GTNNAC 3 cut(s) 558, 706, 751
HpyAV CCTTC 5 cut(s) 153, 255, 281, 804, 961
HpyCH4III ACNGT 4 cut(s) 499, 670, 701, 1195
HpyCH4IV ACGT 1 cut(s) 903
HpyCH4V TGCA 7 cut(s) 264, 269, 308, 434, 461, 606, 740
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 612
HpyF3I CTNAG 3 cut(s) 343, 784, 1036
HpySE526I ACGT 1 cut(s) 903
Hsp92II CATG 9 cut(s) 216, 365, 443, 451, 662, 725, 847, 998, 1124
HspAI GCGC 1 cut(s) 719
Kzo9I GATC 6 cut(s) 127, 505, 1067, 1231, 1300, 1317
LguI GCTCTTC 1 cut(s) 458
LmnI GCTCC 3 cut(s) 296, 659, 785
Lsp1109I GCAGC 2 cut(s) 331, 1159
LweI GCATC 1 cut(s) 278
MaeI CTAG 1 cut(s) 68
MaeII ACGT 1 cut(s) 903
MaeIII GTNAC 1 cut(s) 499
MalI GATC 6 cut(s) 129, 507, 1069, 1233, 1302, 1319
MboI GATC 6 cut(s) 127, 505, 1067, 1231, 1300, 1317
MboII GAAGA 9 cut(s) 137, 144, 445, 525, 737, 930, 1115, 1118, 1283
MflI RGATCY 1 cut(s) 127
MlsI TGGCCA 1 cut(s) 1043
MluCI AATT 6 cut(s) 11, 25, 134, 860, 868, 1083
MluNI TGGCCA 1 cut(s) 1043
MlyI GAGTC 4 cut(s) 80, 215, 701, 841
MmeI TCCRAC 1 cut(s) 936
Mox20I TGGCCA 1 cut(s) 1043
Mph1103I ATGCAT 2 cut(s) 266, 608
MscI TGGCCA 1 cut(s) 1043
MseI TTAA 6 cut(s) 41, 899, 954, 990, 1242, 1257
MslI CAYNNNNRTG 1 cut(s) 1196
Msp20I TGGCCA 1 cut(s) 1043
MspI CCGG 2 cut(s) 203, 1268
MspR9I CCNGG 1 cut(s) 203
Mva1269I GAATGC 2 cut(s) 608, 742
MwoI GCNNNNNNNGC 2 cut(s) 288, 612
NciI CCSGG 1 cut(s) 203
NcoI CCATGG 2 cut(s) 212, 994
NdeI CATATG 1 cut(s) 1296
NdeII GATC 6 cut(s) 127, 505, 1067, 1231, 1300, 1317
NlaIII CATG 9 cut(s) 216, 365, 443, 451, 662, 725, 847, 998, 1124
NlaIV GGNNCC 4 cut(s) 218, 292, 655, 949
NmuCI GTSAC 1 cut(s) 499
NsiI ATGCAT 2 cut(s) 266, 608
NspI RCATGY 1 cut(s) 451
OliI CACNNNNGTG 1 cut(s) 1196
PagI TCATGA 1 cut(s) 1120
PciSI GCTCTTC 1 cut(s) 458
PctI GAATGC 2 cut(s) 608, 742
PfeI GAWTC 1 cut(s) 357
PkrI GCNGC 2 cut(s) 321, 1174
PleI GAGTC 4 cut(s) 79, 214, 701, 841
PpsI GAGTC 4 cut(s) 79, 214, 701, 841
PsiI TTATAA 1 cut(s) 689
PspN4I GGNNCC 4 cut(s) 218, 292, 655, 949
PspPI GGNCC 2 cut(s) 216, 1154
PsuI RGATCY 1 cut(s) 127
RsaI GTAC 3 cut(s) 66, 352, 423
RsaNI GTAC 3 cut(s) 65, 351, 422
RseI CAYNNNNRTG 1 cut(s) 1196
SapI GCTCTTC 1 cut(s) 458
SaqAI TTAA 6 cut(s) 41, 899, 954, 990, 1242, 1257
SatI GCNGC 2 cut(s) 320, 1173
Sau3AI GATC 6 cut(s) 127, 505, 1067, 1231, 1300, 1317
Sau96I GGNCC 2 cut(s) 216, 1154
SchI GAGTC 4 cut(s) 80, 215, 701, 841
ScrFI CCNGG 1 cut(s) 203
SfaNI GCATC 1 cut(s) 278
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 1196
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 6 cut(s) 11, 25, 134, 860, 868, 1083
SsiI CCGC 1 cut(s) 19
SspI AATATT 1 cut(s) 61
SspMI CTAG 1 cut(s) 68
StyD4I CCNGG 1 cut(s) 201
StyI CCWWGG 2 cut(s) 212, 994
TaaI ACNGT 4 cut(s) 499, 670, 701, 1195
TaiI ACGT 1 cut(s) 906
TaqI TCGA 1 cut(s) 1320
TasI AATT 6 cut(s) 11, 25, 134, 860, 868, 1083
TatI WGTACW 1 cut(s) 64
TfiI GAWTC 1 cut(s) 357
Tru1I TTAA 6 cut(s) 41, 899, 954, 990, 1242, 1257
Tru9I TTAA 6 cut(s) 41, 899, 954, 990, 1242, 1257
TscAI CASTG 3 cut(s) 463, 704, 1069
TseFI GTSAC 1 cut(s) 499
TseI GCWGC 2 cut(s) 319, 1172
Tsp45I GTSAC 1 cut(s) 499
TspDTI ATGAA 5 cut(s) 138, 402, 428, 738, 1109
TspGWI ACGGA 1 cut(s) 408
TspRI CASTG 3 cut(s) 463, 704, 1069
VpaK11BI GGWCC 1 cut(s) 216
XapI RAATTY 3 cut(s) 11, 25, 868
XceI RCATGY 1 cut(s) 451
XcmI CCANNNNNNNNNTGG 1 cut(s) 700
XspI CTAG 1 cut(s) 68
Zsp2I ATGCAT 2 cut(s) 266, 608
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.