Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0004527

Physical Location & Seq

Genomic Coordinates Forward (+)

37924225 .. 37925586

Gene Structure 1362 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G449400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1362 bp

ATGGAATTGGACTTGAAATATCCCAAGAAATCCCTCGTTAGCTTCATTTATGTAGAGAGAGATAATGCAATGGAGGGAAGTAACAATATTGATCAACAAGAAGAAGCTATCATCTGTGACCAAGAAGATAGCAGCAGCCCTTCAATGCTTTCCAGCCCCCACACCACAATGCCATTGCCACCCCCAAGCCCAGAGTCCCCATGGACCCTCTCCCCTCTCCAAACCCCATCCCCTTCGCTTCTTTACCACTGCATTGCCTCGCTGCATCGCCGCGAAGGCATCATCTACTCCATTGCCATTTCAAGGCAGCAAGGGCTAGTCTTCACCGGCTCCAAGAGCACCCGAATTCGCGTATGGAGGCAGCCGGACTACATAGAATACGGTTGCATCAAGGCCACTTCAGGTGAAGTAAGAAGCACTTTGGCTTATGGTGACTTTCTTTTCACCACACACAAGGATCACAAAATCAGAATATGGAACTTCAAAGTCCCAGACAATTTCAGGTCCAAAAAGGTCTCCTCCATCCCCAAAAAGAGCTCGTTTTCTTTGTTTTTGAAAACCAACACCCAAAAACACAAAGAATGTGTTTCCTGCTTGGCATATTATCATGCAGAAGGCCTGCTATACAGTGGCTCATATGACAAAACAGTCAAAGCCTGGAGGGTCTTAACCAAAAACTGTGTGGATTCATTTGTGGCACATGAACACAATGTCAATGCAATTTTGGTGAAGCAAGATGATGGCTGTGTTTTCACTTGCTCCTCAGATGGGTCAGTGAAGATTTGGAGAAGGGTATTTAGTGAAAACTCTCACACTCTCGTCATGACTCTGAATTTCCAAAACTACCCTATATATGCATTGGCCCTAAGCACTTCATCATTCAACTCCAATTGTTTCCTTTACTCTGGTTCTTCAGATGGAACAATTAATTTCTGGGAGAAGGAGAAAATAACCTTCAGATTTAACCATGGTGGGTTTTTACAGGGTCACAATTTTGCAGTGCTCTGCCTAGTGGCTGTGGAGACGTTGATATTTAGTGGGTCAGAGGATACAACCATTAGGGTTTGGAGAAGAGAGGAAGGGAGCTGTTTCCATGAGTGTTTGGCTGTGCTGAATGGGCACAGAGGGCCTGTGAGGTGTTTGGCTGCTTGTTTGGAGATGGACAAAGTTGTGAAGGGGTTTCTGGTTTATAGTGCAAGTTTGGACCAGAGTTTTAAAGTTTGGAAGGTCAAGGTGTCACCAGAAGAGAAGATGGGGTTCAGTTATATGAAGAGGAGTTTTTCCAGGACTAAGGTTAGGGATTATGAGACTAGCCCTGTGTTGTCTCCTTCATGGGTTGAGAGGAAGCTGCTTCAAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005874 GO:0005875 GO:0005938 GO:0007154 GO:0007165 GO:0008017 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0017016 GO:0017048 GO:0019899 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0031267 GO:0031592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035556 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044380 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044877 GO:0045504 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051179 GO:0051640 GO:0051641 GO:0051642 GO:0051645 GO:0051716 GO:0061842 GO:0065007 GO:0070727 GO:0070840 GO:0071539 GO:0071944 GO:0072698 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1905508

KEGG Pathways

Metabolic & Signaling

ko04114 ko04120 ko04218 ko04310 ko04340 ko04341 ko04390 ko04624 ko04710 ko05131 map04114 map04120 map04218 map04310 map04340 map04341 map04390 map04624 map04710 map05131

Pfam Domains

Protein Families

WD40

Protein Analysis

454

Amino Acids

51.56

Weight (kDa)

8.85

Isoelectric Point (pI)

53.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35690 FvH4_6g31961
malus_domestica	MD08G1115200.v1.1 MD09G1207500.v1.1 MD17G1188800.v1.1
prunus_persica	Prupe.1G449400_v2.0.a1 Prupe.3G063300_v2.0.a1
pyrus_communis	pycom09g12370
rosa_chinensis	RchiOBHm_Chr2g0139471 RchiOBHm_Chr6g0306111
rosa_laevigata	RLG00000010824 RLG00000019813
rosa_multiflora	Rmu_sc0000785.1_g000023 Rmu_sc0000903.1_g000022 Rmu_sc0001983.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105410 Rroxscaffold_7G00162050
rosa_rugosa	Rorug06G0282100 Rorug06G0346800
rosa_samantha	Rh2AG407500 Rh2BG418100 Rh2CG393500 Rh2DG426900 Rh6AG459200 Rh6BG441700 Rh6CG473700 Rh6DG459900
rosa_wichuraiana	Rw2G033010 Rw2G033270 Rw6G006540 Rw6G040030 Rw7G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	647
AccII	CGCG	2 cut(s)	273, 351
AciI	CCGC	1 cut(s)	271
AclWI	GGATC	1 cut(s)	465
AcsI	RAATTY	2 cut(s)	345, 832
AcuI	CTGAAG	3 cut(s)	384, 897, 940
AfiI	CCNNNNNNNGG	2 cut(s)	303, 768
AgsI	TTSAA	7 cut(s)	16, 144, 303, 484, 556, 883, 1355
AjnI	CCWGG	2 cut(s)	656, 1283
AluBI	AGCT	5 cut(s)	42, 107, 537, 1086, 1348
AluI	AGCT	5 cut(s)	42, 107, 537, 1086, 1348
Alw21I	GWGCWC	3 cut(s)	341, 539, 1005
Alw26I	GTCTC	4 cut(s)	520, 1016, 1301, 1329
AlwI	GGATC	1 cut(s)	465
AoxI	GGCC	4 cut(s)	393, 616, 861, 1127
ApeKI	GCWGC	7 cut(s)	132, 135, 262, 307, 361, 1145, 1348
ApoI	RAATTY	2 cut(s)	345, 832
AseI	ATTAAT	1 cut(s)	927
AspS9I	GGNCC	5 cut(s)	204, 504, 862, 1127, 1204
AsuHPI	GGTGA	6 cut(s)	316, 416, 436, 443, 739, 1230
AvaII	GGWCC	3 cut(s)	204, 504, 1204
BaeGI	GKGCMC	1 cut(s)	1122
BanII	GRGCYC	1 cut(s)	539
BbsI	GAAGAC	1 cut(s)	313
Bbv12I	GWGCWC	3 cut(s)	341, 539, 1005
BbvI	GCAGC	7 cut(s)	144, 147, 249, 319, 373, 1132, 1335
BccI	CCATC	7 cut(s)	235, 530, 734, 761, 911, 1153, 1246
BciT130I	CCWGG	2 cut(s)	658, 1285
BciVI	GTATCC	1 cut(s)	1042
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	4 cut(s)	520, 1016, 1301, 1329
BfaI	CTAG	3 cut(s)	317, 1010, 1311
BfuI	GTATCC	1 cut(s)	1042
BglI	GCCNNNNNGGC	1 cut(s)	276
BisI	GCNGC	8 cut(s)	133, 136, 263, 271, 308, 362, 1146, 1349
BlsI	GCNGC	8 cut(s)	134, 137, 264, 272, 309, 363, 1147, 1350
Bme1390I	CCNGG	2 cut(s)	658, 1285
Bme18I	GGWCC	3 cut(s)	204, 504, 1204
BmgT120I	GGNCC	5 cut(s)	204, 504, 862, 1127, 1204
BmiI	GGNNCC	2 cut(s)	206, 331
BmrFI	CCNGG	2 cut(s)	658, 1285
BmsI	GCATC	3 cut(s)	274, 288, 396
BpiI	GAAGAC	1 cut(s)	313
BpmI	CTGGAG	1 cut(s)	679
Bpu10I	CCTNAGC	1 cut(s)	866
BsaI	GGTCTC	1 cut(s)	520
BsaJI	CCNNGG	2 cut(s)	200, 967
Bsc4I	CCNNNNNNNGG	2 cut(s)	303, 768
Bse118I	RCCGGY	1 cut(s)	326
Bse3DI	GCAATG	4 cut(s)	75, 173, 252, 291
BseBI	CCWGG	2 cut(s)	658, 1285
BseDI	CCNNGG	2 cut(s)	200, 967
BseGI	GGATG	2 cut(s)	227, 522
BseLI	CCNNNNNNNGG	2 cut(s)	303, 768
BseMI	GCAATG	4 cut(s)	75, 173, 252, 291
BseMII	CTCAG	1 cut(s)	777
BseRI	GAGGAG	3 cut(s)	508, 751, 1288
BseSI	GKGCMC	1 cut(s)	1122
BseXI	GCAGC	7 cut(s)	144, 147, 249, 319, 373, 1132, 1335
Bsh1236I	CGCG	2 cut(s)	273, 351
BshFI	GGCC	4 cut(s)	395, 618, 863, 1129
BsiHKAI	GWGCWC	3 cut(s)	341, 539, 1005
BsiSI	CCGG	2 cut(s)	327, 365
BslFI	GGGAC	2 cut(s)	181, 473
BslI	CCNNNNNNNGG	2 cut(s)	303, 768
BsmAI	GTCTC	4 cut(s)	520, 1016, 1301, 1329
BsmBI	CGTCTC	1 cut(s)	1016
BsmFI	GGGAC	2 cut(s)	181, 473
BsnI	GGCC	4 cut(s)	395, 618, 863, 1129
Bso31I	GGTCTC	1 cut(s)	520
Bsp1286I	GDGCHC	4 cut(s)	341, 539, 1005, 1122
Bsp143I	GATC	2 cut(s)	91, 457
Bsp19I	CCATGG	2 cut(s)	200, 967
BspACI	CCGC	1 cut(s)	271
BspANI	GGCC	4 cut(s)	395, 618, 863, 1129
BspCNI	CTCAG	1 cut(s)	776
BspFNI	CGCG	2 cut(s)	273, 351
BspHI	TCATGA	1 cut(s)	822
BspLI	GGNNCC	2 cut(s)	206, 331
BspPI	GGATC	1 cut(s)	465
BspTNI	GGTCTC	1 cut(s)	520
BsrDI	GCAATG	4 cut(s)	75, 173, 252, 291
BsrFI	RCCGGY	1 cut(s)	326
BssAI	RCCGGY	1 cut(s)	326
BssECI	CCNNGG	2 cut(s)	200, 967
BssMI	GATC	2 cut(s)	91, 457
BssT1I	CCWWGG	2 cut(s)	200, 967
Bst2UI	CCWGG	2 cut(s)	658, 1285
Bst4CI	ACNGT	4 cut(s)	383, 629, 649, 680
Bst6I	CTCTTC	3 cut(s)	1066, 1239, 1265
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	3 cut(s)	763, 866, 1290
BstDSI	CCRYGG	2 cut(s)	200, 967
BstF5I	GGATG	2 cut(s)	227, 522
BstFNI	CGCG	2 cut(s)	273, 351
BstKTI	GATC	2 cut(s)	94, 460
BstMAI	GTCTC	4 cut(s)	520, 1016, 1301, 1329
BstMBI	GATC	2 cut(s)	91, 457
BstMWI	GCNNNNNNNGC	5 cut(s)	276, 313, 336, 1117, 1126
BstNI	CCWGG	2 cut(s)	658, 1285
BstSCI	CCNGG	2 cut(s)	656, 1283
BstSLI	GKGCMC	1 cut(s)	1122
BstUI	CGCG	2 cut(s)	273, 351
BstV1I	GCAGC	7 cut(s)	144, 147, 249, 319, 373, 1132, 1335
BstV2I	GAAGAC	1 cut(s)	313
BsuI	GTATCC	1 cut(s)	1042
BsuRI	GGCC	4 cut(s)	395, 618, 863, 1129
BtgI	CCRYGG	2 cut(s)	200, 967
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	2 cut(s)	227, 522
BtsI	GCAGTG	2 cut(s)	247, 1005
BtsIMutI	CAGTG	4 cut(s)	247, 634, 780, 1005
Cac8I	GCNNGC	1 cut(s)	620
CciI	TCATGA	1 cut(s)	822
Cfr10I	RCCGGY	1 cut(s)	326
Cfr13I	GGNCC	5 cut(s)	204, 504, 862, 1127, 1204
CviAII	CATG	7 cut(s)	201, 608, 701, 823, 968, 1094, 1332
DdeI	CTNAG	3 cut(s)	763, 866, 1290
DpnI	GATC	2 cut(s)	93, 459
DpnII	GATC	2 cut(s)	91, 457
DraI	TTTAAA	1 cut(s)	1216
DrdI	GACNNNNNNGTC	1 cut(s)	647
DseDI	GACNNNNNNGTC	1 cut(s)	647
Eam1104I	CTCTTC	3 cut(s)	1066, 1239, 1265
EarI	CTCTTC	3 cut(s)	1066, 1239, 1265
Ecl136II	GAGCTC	1 cut(s)	537
Eco130I	CCWWGG	2 cut(s)	200, 967
Eco147I	AGGCCT	1 cut(s)	618
Eco24I	GRGCYC	1 cut(s)	539
Eco31I	GGTCTC	1 cut(s)	520
Eco47I	GGWCC	3 cut(s)	204, 504, 1204
Eco53kI	GAGCTC	1 cut(s)	537
Eco57I	CTGAAG	3 cut(s)	384, 897, 940
EcoICRI	GAGCTC	1 cut(s)	537
EcoO109I	RGGNCCY	1 cut(s)	1127
EcoRI	GAATTC	1 cut(s)	345
EcoRII	CCWGG	2 cut(s)	656, 1283
EcoT14I	CCWWGG	2 cut(s)	200, 967
EcoT22I	ATGCAT	1 cut(s)	859
EcoT38I	GRGCYC	1 cut(s)	539
ErhI	CCWWGG	2 cut(s)	200, 967
Esp3I	CGTCTC	1 cut(s)	1016
FaeI	CATG	7 cut(s)	204, 611, 704, 826, 971, 1097, 1335
FalI	AAGNNNNNCTT	2 cut(s)	403, 435
FaqI	GGGAC	2 cut(s)	181, 473
FatI	CATG	7 cut(s)	200, 607, 700, 822, 967, 1093, 1331
FauNDI	CATATG	1 cut(s)	637
FbaI	TGATCA	1 cut(s)	91
Fnu4HI	GCNGC	8 cut(s)	133, 136, 263, 271, 308, 362, 1146, 1349
FokI	GGATG	2 cut(s)	214, 509
FriOI	GRGCYC	1 cut(s)	539
Fsp4HI	GCNGC	8 cut(s)	133, 136, 263, 271, 308, 362, 1146, 1349
FspBI	CTAG	3 cut(s)	317, 1010, 1311
GluI	GCNGC	8 cut(s)	133, 136, 263, 271, 308, 362, 1146, 1349
GsuI	CTGGAG	1 cut(s)	679
HaeIII	GGCC	4 cut(s)	395, 618, 863, 1129
HapII	CCGG	2 cut(s)	327, 365
Hin1II	CATG	7 cut(s)	204, 611, 704, 826, 971, 1097, 1335
HinfI	GANTC	3 cut(s)	194, 686, 826
HpaII	CCGG	2 cut(s)	327, 365
HphI	GGTGA	6 cut(s)	316, 416, 436, 443, 739, 1230
Hpy188I	TCNGA	6 cut(s)	470, 766, 831, 916, 959, 1045
Hpy188III	TCNNGA	1 cut(s)	823
HpyCH4III	ACNGT	4 cut(s)	383, 629, 649, 680
HpyCH4IV	ACGT	1 cut(s)	1025
HpyCH4V	TGCA	9 cut(s)	68, 252, 265, 387, 611, 719, 857, 998, 1196
HpyF10VI	GCNNNNNNNGC	5 cut(s)	276, 313, 336, 1117, 1126
HpyF3I	CTNAG	3 cut(s)	763, 866, 1290
HpySE526I	ACGT	1 cut(s)	1025
Hsp92II	CATG	7 cut(s)	204, 611, 704, 826, 971, 1097, 1335
Ksp22I	TGATCA	1 cut(s)	91
Kzo9I	GATC	2 cut(s)	91, 457
LmnI	GCTCC	3 cut(s)	335, 764, 1083
Lsp1109I	GCAGC	7 cut(s)	144, 147, 249, 319, 373, 1132, 1335
LweI	GCATC	3 cut(s)	274, 288, 396
MaeI	CTAG	3 cut(s)	317, 1010, 1311
MaeII	ACGT	1 cut(s)	1025
MaeIII	GTNAC	5 cut(s)	80, 116, 431, 986, 1236
MalI	GATC	2 cut(s)	93, 459
MboI	GATC	2 cut(s)	91, 457
MboII	GAAGA	9 cut(s)	113, 137, 313, 790, 903, 1083, 1256, 1261, 1282
MfeI	CAATTG	1 cut(s)	889
MhlI	GDGCHC	4 cut(s)	341, 539, 1005, 1122
MluCI	AATT	9 cut(s)	5, 345, 496, 720, 832, 889, 924, 928, 991
MlyI	GAGTC	2 cut(s)	203, 820
Mph1103I	ATGCAT	1 cut(s)	859
MseI	TTAA	4 cut(s)	668, 927, 963, 1215
MslI	CAYNNNNRTG	1 cut(s)	167
MspI	CCGG	2 cut(s)	327, 365
MspR9I	CCNGG	2 cut(s)	658, 1285
MunI	CAATTG	1 cut(s)	889
MvaI	CCWGG	2 cut(s)	658, 1285
MvnI	CGCG	2 cut(s)	273, 351
MwoI	GCNNNNNNNGC	5 cut(s)	276, 313, 336, 1117, 1126
NcoI	CCATGG	2 cut(s)	200, 967
NdeI	CATATG	1 cut(s)	637
NdeII	GATC	2 cut(s)	91, 457
NlaIII	CATG	7 cut(s)	204, 611, 704, 826, 971, 1097, 1335
NlaIV	GGNNCC	2 cut(s)	206, 331
NmuCI	GTSAC	4 cut(s)	116, 431, 986, 1236
NsiI	ATGCAT	1 cut(s)	859
PagI	TCATGA	1 cut(s)	822
PceI	AGGCCT	1 cut(s)	618
PfeI	GAWTC	1 cut(s)	686
PfoI	TCCNGGA	1 cut(s)	1283
PkrI	GCNGC	8 cut(s)	134, 137, 264, 272, 309, 363, 1147, 1350
PleI	GAGTC	2 cut(s)	202, 820
PpsI	GAGTC	2 cut(s)	202, 820
PshBI	ATTAAT	1 cut(s)	927
Psp124BI	GAGCTC	1 cut(s)	539
Psp6I	CCWGG	2 cut(s)	656, 1283
PspGI	CCWGG	2 cut(s)	656, 1283
PspN4I	GGNNCC	2 cut(s)	206, 331
PspPI	GGNCC	5 cut(s)	204, 504, 862, 1127, 1204
RseI	CAYNNNNRTG	1 cut(s)	167
SacI	GAGCTC	1 cut(s)	539
SaqAI	TTAA	4 cut(s)	668, 927, 963, 1215
SatI	GCNGC	8 cut(s)	133, 136, 263, 271, 308, 362, 1146, 1349
Sau3AI	GATC	2 cut(s)	91, 457
Sau96I	GGNCC	5 cut(s)	204, 504, 862, 1127, 1204
SchI	GAGTC	2 cut(s)	203, 820
ScrFI	CCNGG	2 cut(s)	658, 1285
SduI	GDGCHC	4 cut(s)	341, 539, 1005, 1122
SfaNI	GCATC	3 cut(s)	274, 288, 396
SinI	GGWCC	3 cut(s)	204, 504, 1204
SmiMI	CAYNNNNRTG	1 cut(s)	167
Sse9I	AATT	9 cut(s)	5, 345, 496, 720, 832, 889, 924, 928, 991
SseBI	AGGCCT	1 cut(s)	618
SsiI	CCGC	1 cut(s)	271
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	3 cut(s)	317, 1010, 1311
SstI	GAGCTC	1 cut(s)	539
StuI	AGGCCT	1 cut(s)	618
StyD4I	CCNGG	2 cut(s)	656, 1283
StyI	CCWWGG	2 cut(s)	200, 967
TaaI	ACNGT	4 cut(s)	383, 629, 649, 680
TaiI	ACGT	1 cut(s)	1028
TasI	AATT	9 cut(s)	5, 345, 496, 720, 832, 889, 924, 928, 991
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	686
Tru1I	TTAA	4 cut(s)	668, 927, 963, 1215
Tru9I	TTAA	4 cut(s)	668, 927, 963, 1215
TscAI	CASTG	4 cut(s)	254, 634, 780, 1005
TseFI	GTSAC	4 cut(s)	116, 431, 986, 1236
TseI	GCWGC	7 cut(s)	132, 135, 262, 307, 361, 1145, 1348
Tsp45I	GTSAC	4 cut(s)	116, 431, 986, 1236
TspDTI	ATGAA	6 cut(s)	34, 678, 717, 864, 1283, 1320
TspRI	CASTG	4 cut(s)	254, 634, 780, 1005
VpaK11BI	GGWCC	3 cut(s)	204, 504, 1204
VspI	ATTAAT	1 cut(s)	927
XapI	RAATTY	2 cut(s)	345, 832
XcmI	CCANNNNNNNNNTGG	2 cut(s)	198, 679
XspI	CTAG	3 cut(s)	317, 1010, 1311
Zsp2I	ATGCAT	1 cut(s)	859

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.