Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004527

Physical Location & Seq

Genomic Coordinates Reverse (-)

42976947 .. 42978061

Gene Structure 1115 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0282100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGACTTTGATAATAAGATGTGTAGATGTTGCAAGTTTCCCAATAAAAGAGGAAGAGTATTTTTTAGAGTTTTTAAATGTAGAAGATACATCGGGTTTGGGTCTTGTTAGTGAACTACAAGCTGCTCTAAGCTCTCTTGATTTAGATATTGATGAGGTGAGGGGACAAGGTTATGATAATGGTTCCAATATGAGAGGAAAACACCAAGGTGTTCACAAAAGAGAAGATGGATTTAATTCTGCTATAATTGATGCTAAAGAAATTGCAAATGAAATGGGAATTGAGCCTGTATTTCCTATGAAGCGTAGGGTTATAAGAAAGAGACATTTGGATGAGATTCCTGATACAGATAGAGAACAACAATTAGCTCAAGAAGATTTTAGAACTGATTACTTTCTTGTCGATTCTCAATTGAAGAGTAGATTTGAACAAATGGAAAGTTTTGAATCTGTATTTGGCTTCTTATTTGATGCATCACAGTTGGTTTCATTAGATGATGAAGAAATGAAAAATTGGTGTTTGAAACTTGAACTTGCTTTGAAACATGGTGAGGTGTCTGATATTGATGCAAAATATATATTTGCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005874 GO:0005875 GO:0005938 GO:0007154 GO:0007165 GO:0008017 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0017016 GO:0017048 GO:0019899 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0031267 GO:0031592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035556 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044380 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044877 GO:0045504 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051179 GO:0051640 GO:0051641 GO:0051642 GO:0051645 GO:0051716 GO:0061842 GO:0065007 GO:0070727 GO:0070840 GO:0071539 GO:0071944 GO:0072698 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1905508

KEGG Pathways

Metabolic & Signaling

ko04114 ko04120 ko04218 ko04310 ko04340 ko04341 ko04390 ko04624 ko04710 ko05131 map04114 map04120 map04218 map04310 map04340 map04341 map04390 map04624 map04710 map05131

Pfam Domains

Protein Families

WD40

Protein Analysis

196

Amino Acids

22.56

Weight (kDa)

4.54

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4371	PF14291	1 - 70	1.7e-06	Domain of unknown function (DUF4371)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35690 FvH4_6g31961
malus_domestica	MD08G1115200.v1.1 MD09G1207500.v1.1 MD17G1188800.v1.1
prunus_persica	Prupe.1G449400_v2.0.a1 Prupe.3G063300_v2.0.a1
pyrus_communis	pycom09g12370
rosa_chinensis	RchiOBHm_Chr2g0139471 RchiOBHm_Chr6g0306111
rosa_laevigata	RLG00000010824 RLG00000019813
rosa_multiflora	Rmu_sc0000785.1_g000023 Rmu_sc0000903.1_g000022 Rmu_sc0001983.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105410 Rroxscaffold_7G00162050
rosa_rugosa	Rorug06G0282100 Rorug06G0346800
rosa_samantha	Rh2AG407500 Rh2BG418100 Rh2CG393500 Rh2DG426900 Rh6AG459200 Rh6BG441700 Rh6CG473700 Rh6DG459900
rosa_wichuraiana	Rw2G033010 Rw2G033270 Rw6G006540 Rw6G040030 Rw7G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	314
AgsI	TTSAA	6 cut(s)	415, 428, 446, 523, 530, 541
AjuI	GAANNNNNNNTTGG	2 cut(s)	438, 470
AleI	CACNNNNGTG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	122, 132, 368
AluI	AGCT	3 cut(s)	122, 132, 368
Alw26I	GTCTC	1 cut(s)	316
ApeKI	GCWGC	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	169, 560
BbvI	GCAGC	1 cut(s)	109
BccI	CCATC	1 cut(s)	221
BcoDI	GTCTC	1 cut(s)	316
BisI	GCNGC	1 cut(s)	123
BlsI	GCNGC	1 cut(s)	124
BmiI	GGNNCC	1 cut(s)	184
BmsI	GCATC	4 cut(s)	241, 460, 482, 556
BpuEI	CTTGAG	1 cut(s)	354
BsaJI	CCNNGG	1 cut(s)	205
BseDI	CCNNGG	1 cut(s)	205
BseGI	GGATG	1 cut(s)	337
BseXI	GCAGC	1 cut(s)	109
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	316
BsmFI	GGGAC	1 cut(s)	177
BspLI	GGNNCC	1 cut(s)	184
BssECI	CCNNGG	1 cut(s)	205
BssT1I	CCWWGG	1 cut(s)	205
Bst4CI	ACNGT	1 cut(s)	480
Bst6I	CTCTTC	2 cut(s)	48, 410
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	1 cut(s)	337
BstMAI	GTCTC	1 cut(s)	316
BstV1I	GCAGC	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	337
CviAII	CATG	1 cut(s)	545
CviJI	RGCY	5 cut(s)	122, 132, 286, 368, 459
CviKI_1	RGCY	5 cut(s)	122, 132, 286, 368, 459
DdeI	CTNAG	1 cut(s)	128
DraI	TTTAAA	1 cut(s)	75
Eam1104I	CTCTTC	2 cut(s)	48, 410
EarI	CTCTTC	2 cut(s)	48, 410
Eco130I	CCWWGG	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	205
EcoT22I	ATGCAT	1 cut(s)	475
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	1 cut(s)	548
FaiI	YATR	8 cut(s)	174, 191, 245, 299, 314, 546, 576, 578
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	123
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	123
GluI	GCNGC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	548
HinfI	GANTC	3 cut(s)	337, 404, 446
HphI	GGTGA	2 cut(s)	169, 560
Hpy166II	GTNNAC	2 cut(s)	113, 214
Hpy188I	TCNGA	2 cut(s)	559, 590
Hpy188III	TCNNGA	3 cut(s)	137, 341, 371
Hpy8I	GTNNAC	2 cut(s)	113, 214
HpyCH4III	ACNGT	1 cut(s)	480
HpyCH4V	TGCA	4 cut(s)	32, 266, 473, 569
HpyF3I	CTNAG	1 cut(s)	128
Hsp92II	CATG	1 cut(s)	548
LpnPI	CCDG	2 cut(s)	300, 354
Lsp1109I	GCAGC	1 cut(s)	109
LweI	GCATC	4 cut(s)	241, 460, 482, 556
MboII	GAAGA	6 cut(s)	65, 95, 236, 386, 427, 512
MfeI	CAATTG	1 cut(s)	410
MluCI	AATT	7 cut(s)	235, 246, 261, 279, 362, 410, 511
MnlI	CCTC	5 cut(s)	43, 148, 153, 188, 544
Mph1103I	ATGCAT	1 cut(s)	475
MseI	TTAA	2 cut(s)	74, 234
MslI	CAYNNNNRTG	2 cut(s)	207, 330
MunI	CAATTG	1 cut(s)	410
NlaIII	CATG	1 cut(s)	548
NlaIV	GGNNCC	1 cut(s)	184
NsiI	ATGCAT	1 cut(s)	475
OliI	CACNNNNGTG	1 cut(s)	207
PfeI	GAWTC	3 cut(s)	337, 404, 446
PkrI	GCNGC	1 cut(s)	124
PsiI	TTATAA	1 cut(s)	314
PspN4I	GGNNCC	1 cut(s)	184
RseI	CAYNNNNRTG	2 cut(s)	207, 330
SaqAI	TTAA	2 cut(s)	74, 234
SatI	GCNGC	1 cut(s)	123
SetI	ASST	7 cut(s)	124, 134, 159, 172, 211, 370, 555
SfaNI	GCATC	4 cut(s)	241, 460, 482, 556
SmiMI	CAYNNNNRTG	2 cut(s)	207, 330
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	7 cut(s)	235, 246, 261, 279, 362, 410, 511
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	480
TaqI	TCGA	1 cut(s)	402
TasI	AATT	7 cut(s)	235, 246, 261, 279, 362, 410, 511
TfiI	GAWTC	3 cut(s)	337, 404, 446
Tru1I	TTAA	2 cut(s)	74, 234
Tru9I	TTAA	2 cut(s)	74, 234
TseI	GCWGC	1 cut(s)	122
TspDTI	ATGAA	5 cut(s)	285, 314, 477, 513, 521
Zsp2I	ATGCAT	1 cut(s)	475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.