Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004527

Physical Location & Seq

Genomic Coordinates Forward (+)

16992750 .. 16994091

Gene Structure 1342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G016590.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGGAATTGGAATTCTATAGCAGGAATTCTCTGTTTCGCTTCGTAGATATCGACAGAAATAATTTAATAGAATCACCCCACTGGCCTCCCCGATATCAACACCAATCACAAAGTGTCCCCCACACAACCACAATGCTGACACTAATGCCACCCCCAAGCCCAGAGTCCCCATGGACCCTCTCCCCTCACCAAACCCCATCCCCTTCACTCCTTTACCACTGCATTGCCTCCCTCTTTCACTGCGAAGGCTCCATCTCCTCCATTGCAGTCTCAAAGCAGCAAGGAGTAGTCTTCACTGGCTCAGAGAGTACCCGAGTTCGTGTGTGGAGACAACCAGACCACATTGAATACGGTTGTCTTAATGCGACTTCAGGTGAAGTACGAGCTATTGCAACTCATGGTAATATGCTTTTCACCTCACACAAAGACCACAAAATTCGAATGTGGAACTTCATGGTCACAGAACACAATTTCAAGTCCAAAAAGGTTTCTTCTCTCCCCAAAACAAGTTCTTTCCCTTTATTTTCAAGATTTACAAACACCAAACAGCAACACAAAGAATGCATTTCCTGCCTGGCATATTATCAAACCGATGGTCTGTTGTATACTGGCTCCCATGACAGAACAGTCAAAGCATGGCGGCTTATAACCAATCACTGTGTGGACTCATTTGTGGCACATGAAGACGATGTGAATGCAATGGTGGTGAACCAAGATGATGGGTGCGTTTTCACTTGCTCCTCAGATGGTTCTGTCAAACTGTGGAGAAGGGTTTTCAGAGAAAACTCTCACACTCTCACCATGACTCTCAAATCCCAATTCCGAAATTCCAACTACCCTGTAAACGCCATAGCCTTAAACACATCATCCAACTCTTGCTTCCTCTACTCTGGTTCTTCAGACGGAACCATTAGTTTCTGGGAGAAGGAGAAACTGACCCACAGGTTTAACCATGGTGGGTTTTTACAGGGCCACCATTTTTCAGTTCTGTGTTTAGTGGCCATCAAGAAGTTGATTTTCAGTGGATCAGAGGATACTACAATTAGGGTTTGGAGGAGGGAAGAAGGGGGTTGTTTTAATGAATGTTTGGCTGTGTTGGAGGGGCATAGAGGCCCTGTGAGGTGTTTGGCTGCTTGTTTGGAGATTGAGAAAGTTGTGAAGGGTTTTTTGGTTTATAGTGCCAGTTTGGATCAAACTTTTAAGGTGTGGAGTGTTAAGGTCTTGCCGGAAGAGGGAATGGGGTTGAACTGTTATATGGAGCGAAGATTTTCGAGGAACAATGGGATGCAATGGGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000775 GO:0000776 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0005874 GO:0005875 GO:0005938 GO:0007154 GO:0007165 GO:0008017 GO:0008092 GO:0008104 GO:0008150 GO:0009987 GO:0015630 GO:0015631 GO:0017016 GO:0017048 GO:0019899 GO:0019932 GO:0019933 GO:0019935 GO:0023052 GO:0031267 GO:0031592 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035556 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044380 GO:0044422 GO:0044424 GO:0044427 GO:0044430 GO:0044444 GO:0044446 GO:0044450 GO:0044464 GO:0044877 GO:0045504 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051179 GO:0051640 GO:0051641 GO:0051642 GO:0051645 GO:0051716 GO:0061842 GO:0065007 GO:0070727 GO:0070840 GO:0071539 GO:0071944 GO:0072698 GO:0098687 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568 GO:1905508

KEGG Pathways

Metabolic & Signaling

ko04114 ko04120 ko04218 ko04310 ko04340 ko04341 ko04390 ko04624 ko04710 ko05131 map04114 map04120 map04218 map04310 map04340 map04341 map04390 map04624 map04710 map05131

Pfam Domains

Protein Families

WD40

Protein Analysis

432

Amino Acids

49.22

Weight (kDa)

8.56

Isoelectric Point (pI)

49.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_WDR5	PF25175	81 - 273	2e-20	WDR5 beta-propeller domain
EIF3I	PF24805	82 - 287	1.9e-07	EIF3I
Beta-prop_TEP1_2nd	PF25047	94 - 257	1.3e-10	TEP-1 second beta-propeller
Beta-prop_ACSF4	PF13570	180 - 350	4.5e-06	Beta-alanine-activating enzyme, beta-propeller
WDR55	PF24796	180 - 407	6.3e-17	WDR55
WD40_CDC20-Fz	PF24807	183 - 313	1.6e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	183 - 256	5.9e-14	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	183 - 403	5e-08	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	185 - 310	3.5e-13	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	185 - 280	1.9e-09	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	185 - 310	7.1e-11	WDR3 second beta-propeller domain
Beta-prop_WDR90_POC16_2nd	PF23393	185 - 312	2.1e-06	WDR90/POC16, second beta-propeller
WD40_WDHD1_1st	PF24817	186 - 310	4.4e-07	WDHD1 first WD40 domain
Beta-prop_EML_2	PF23414	191 - 352	9.4e-09	Echinoderm microtubule-associated protein second beta-propeller
WD40	PF00400	219 - 255	1.5e-06	WD domain, G-beta repeat
Beta-prop_WDR5	PF25175	267 - 406	3.6e-14	WDR5 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	274 - 406	8.2e-13	WDR3 first beta-propeller domain
WD40_Prp19	PF24814	281 - 404	1.2e-07	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	287 - 359	2.6e-06	THOC3 beta-propeller domain
Beta-prop_TEP1_2nd	PF25047	293 - 406	8.7e-10	TEP-1 second beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35690 FvH4_6g31961
malus_domestica	MD08G1115200.v1.1 MD09G1207500.v1.1 MD17G1188800.v1.1
prunus_persica	Prupe.1G449400_v2.0.a1 Prupe.3G063300_v2.0.a1
pyrus_communis	pycom09g12370
rosa_chinensis	RchiOBHm_Chr2g0139471 RchiOBHm_Chr6g0306111
rosa_laevigata	RLG00000010824 RLG00000019813
rosa_multiflora	Rmu_sc0000785.1_g000023 Rmu_sc0000903.1_g000022 Rmu_sc0001983.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105410 Rroxscaffold_7G00162050
rosa_rugosa	Rorug06G0282100 Rorug06G0346800
rosa_samantha	Rh2AG407500 Rh2BG418100 Rh2CG393500 Rh2DG426900 Rh6AG459200 Rh6BG441700 Rh6CG473700 Rh6DG459900
rosa_wichuraiana	Rw2G033010 Rw2G033270 Rw6G006540 Rw6G040030 Rw7G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AasI	GACNNNNNNGTC	1 cut(s)	626
AccI	GTMKAC	1 cut(s)	605
AciI	CCGC	1 cut(s)	640
AclWI	GGATC	2 cut(s)	1033, 1197
AcoI	YGGCCR	1 cut(s)	999
AcsI	RAATTY	4 cut(s)	11, 25, 435, 826
AcuI	CTGAAG	2 cut(s)	354, 882
AdeI	CACNNNGTG	2 cut(s)	113, 661
AfaI	GTAC	2 cut(s)	310, 381
AfiI	CCNNNNNNNGG	1 cut(s)	1232
AgsI	TTSAA	4 cut(s)	347, 475, 528, 1246
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	4 cut(s)	863, 895, 1151, 1183
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Alw26I	GTCTC	2 cut(s)	274, 322
AlwI	GGATC	2 cut(s)	1033, 1197
Ama87I	CYCGRG	1 cut(s)	312
AoxI	GGCC	4 cut(s)	83, 970, 999, 1111
ApeKI	GCWGC	2 cut(s)	277, 1130
ApoI	RAATTY	4 cut(s)	11, 25, 435, 826
ArsI	GACNNNNNNTTYG	2 cut(s)	580, 612
Asp700I	GAANNNNTTC	1 cut(s)	1267
AspS9I	GGNCC	3 cut(s)	174, 970, 1112
AsuHPI	GGTGA	6 cut(s)	66, 179, 386, 406, 718, 790
AsuII	TTCGAA	1 cut(s)	439
AvaI	CYCGRG	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	174
BalI	TGGCCA	1 cut(s)	1001
BbsI	GAAGAC	2 cut(s)	283, 690
BbvI	GCAGC	2 cut(s)	289, 1117
BccI	CCATC	6 cut(s)	205, 260, 587, 713, 740, 1010
BcgI	CGANNNNNNTGC	2 cut(s)	677, 711
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	1 cut(s)	1027
BcoDI	GTCTC	2 cut(s)	274, 322
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	1027
BisI	GCNGC	3 cut(s)	278, 641, 1131
BlsI	GCNGC	3 cut(s)	279, 642, 1132
Bme1390I	CCNGG	1 cut(s)	575
Bme18I	GGWCC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	312
BmgT120I	GGNCC	3 cut(s)	174, 970, 1112
BmiI	GGNNCC	4 cut(s)	176, 250, 613, 907
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	1 cut(s)	1275
BpiI	GAAGAC	2 cut(s)	283, 690
Bpu14I	TTCGAA	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	170, 952
Bsc4I	CCNNNNNNNGG	1 cut(s)	1232
Bse1I	ACTGG	4 cut(s)	86, 301, 613, 1182
Bse3DI	GCAATG	4 cut(s)	222, 261, 705, 1295
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	170, 952
BseGI	GGATG	3 cut(s)	197, 866, 1290
BseLI	CCNNNNNNNGG	1 cut(s)	1232
BseMI	GCAATG	4 cut(s)	222, 261, 705, 1295
BseMII	CTCAG	2 cut(s)	315, 756
BseNI	ACTGG	4 cut(s)	86, 301, 613, 1182
BseRI	GAGGAG	3 cut(s)	247, 730, 1069
BseXI	GCAGC	2 cut(s)	289, 1117
BshFI	GGCC	4 cut(s)	85, 972, 1001, 1113
BsiHKCI	CYCGRG	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	1226
BslFI	GGGAC	2 cut(s)	101, 151
BslI	CCNNNNNNNGG	1 cut(s)	1232
BsmAI	GTCTC	2 cut(s)	274, 322
BsmFI	GGGAC	2 cut(s)	101, 151
BsmI	GAATGC	2 cut(s)	566, 700
BsnI	GGCC	4 cut(s)	85, 972, 1001, 1113
BsoBI	CYCGRG	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	439
Bsp143I	GATC	2 cut(s)	1025, 1189
Bsp19I	CCATGG	2 cut(s)	170, 952
BspACI	CCGC	1 cut(s)	640
BspANI	GGCC	4 cut(s)	85, 972, 1001, 1113
BspCNI	CTCAG	2 cut(s)	314, 755
BspLI	GGNNCC	4 cut(s)	176, 250, 613, 907
BspPI	GGATC	2 cut(s)	1033, 1197
BspT104I	TTCGAA	1 cut(s)	439
BsrDI	GCAATG	4 cut(s)	222, 261, 705, 1295
BsrI	ACTGG	4 cut(s)	86, 301, 613, 1182
BssECI	CCNNGG	2 cut(s)	170, 952
BssMI	GATC	2 cut(s)	1025, 1189
BssNAI	GTATAC	1 cut(s)	606
BssT1I	CCWWGG	2 cut(s)	170, 952
Bst1107I	GTATAC	1 cut(s)	606
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	5 cut(s)	353, 628, 659, 762, 1250
Bst6I	CTCTTC	1 cut(s)	1224
BstAPI	GCANNNNNTGC	1 cut(s)	570
BstBI	TTCGAA	1 cut(s)	439
BstDEI	CTNAG	2 cut(s)	301, 742
BstDSI	CCRYGG	2 cut(s)	170, 952
BstF5I	GGATG	3 cut(s)	197, 866, 1290
BstKTI	GATC	2 cut(s)	1028, 1192
BstMAI	GTCTC	2 cut(s)	274, 322
BstMBI	GATC	2 cut(s)	1025, 1189
BstMWI	GCNNNNNNNGC	1 cut(s)	570
BstNI	CCWGG	1 cut(s)	575
BstSCI	CCNGG	1 cut(s)	573
BstSFI	CTRYAG	1 cut(s)	16
BstV1I	GCAGC	2 cut(s)	289, 1117
BstV2I	GAAGAC	2 cut(s)	283, 690
BstXI	CCANNNNNNTGG	1 cut(s)	719
BstZ17I	GTATAC	1 cut(s)	606
BsuI	GTATCC	1 cut(s)	1027
BsuRI	GGCC	4 cut(s)	85, 972, 1001, 1113
BtgI	CCRYGG	2 cut(s)	170, 952
BtsCI	GGATG	3 cut(s)	197, 866, 1290
BtsI	GCAGTG	2 cut(s)	217, 238
BtsIMutI	CAGTG	6 cut(s)	79, 217, 238, 294, 655, 1027
Cfr13I	GGNCC	3 cut(s)	174, 970, 1112
Csp6I	GTAC	2 cut(s)	309, 380
CviAII	CATG	8 cut(s)	171, 398, 454, 617, 636, 680, 802, 953
CviQI	GTAC	2 cut(s)	309, 380
DdeI	CTNAG	2 cut(s)	301, 742
DpnI	GATC	2 cut(s)	1027, 1191
DpnII	GATC	2 cut(s)	1025, 1189
DraIII	CACNNNGTG	2 cut(s)	113, 661
DrdI	GACNNNNNNGTC	1 cut(s)	626
DseDI	GACNNNNNNGTC	1 cut(s)	626
EaeI	YGGCCR	1 cut(s)	999
Eam1104I	CTCTTC	1 cut(s)	1224
EarI	CTCTTC	1 cut(s)	1224
Eco130I	CCWWGG	2 cut(s)	170, 952
Eco32I	GATATC	2 cut(s)	49, 95
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	2 cut(s)	354, 882
Eco88I	CYCGRG	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	1112
EcoRI	GAATTC	2 cut(s)	11, 25
EcoRII	CCWGG	1 cut(s)	573
EcoRV	GATATC	2 cut(s)	49, 95
EcoT14I	CCWWGG	2 cut(s)	170, 952
EcoT22I	ATGCAT	1 cut(s)	566
ErhI	CCWWGG	2 cut(s)	170, 952
FaeI	CATG	8 cut(s)	174, 401, 457, 620, 639, 683, 805, 956
FaqI	GGGAC	2 cut(s)	101, 151
FatI	CATG	8 cut(s)	170, 397, 453, 616, 635, 679, 801, 952
FblI	GTMKAC	1 cut(s)	605
Fnu4HI	GCNGC	3 cut(s)	278, 641, 1131
FokI	GGATG	2 cut(s)	184, 853
Fsp4HI	GCNGC	3 cut(s)	278, 641, 1131
GluI	GCNGC	3 cut(s)	278, 641, 1131
HaeIII	GGCC	4 cut(s)	85, 972, 1001, 1113
HapII	CCGG	1 cut(s)	1226
Hin1II	CATG	8 cut(s)	174, 401, 457, 620, 639, 683, 805, 956
HinfI	GANTC	4 cut(s)	71, 164, 665, 805
HpaII	CCGG	1 cut(s)	1226
HphI	GGTGA	6 cut(s)	66, 179, 386, 406, 718, 790
Hpy166II	GTNNAC	4 cut(s)	606, 664, 709, 844
Hpy188I	TCNGA	6 cut(s)	304, 745, 779, 824, 901, 1030
Hpy188III	TCNNGA	2 cut(s)	528, 1006
Hpy8I	GTNNAC	4 cut(s)	606, 664, 709, 844
HpyAV	CCTTC	6 cut(s)	213, 239, 762, 919, 1058, 1153
HpyCH4III	ACNGT	5 cut(s)	353, 628, 659, 762, 1250
HpyCH4V	TGCA	6 cut(s)	222, 266, 392, 564, 698, 1288
HpyF10VI	GCNNNNNNNGC	1 cut(s)	570
HpyF3I	CTNAG	2 cut(s)	301, 742
Hsp92II	CATG	8 cut(s)	174, 401, 457, 620, 639, 683, 805, 956
Kzo9I	GATC	2 cut(s)	1025, 1189
LmnI	GCTCC	4 cut(s)	254, 617, 743, 1258
Lsp1109I	GCAGC	2 cut(s)	289, 1117
LweI	GCATC	1 cut(s)	1275
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	2 cut(s)	1027, 1191
MboI	GATC	2 cut(s)	1025, 1189
MboII	GAAGA	7 cut(s)	283, 483, 695, 888, 1073, 1241, 1275
MlsI	TGGCCA	1 cut(s)	1001
MluCI	AATT	9 cut(s)	5, 11, 25, 61, 435, 469, 818, 826, 1041
MluNI	TGGCCA	1 cut(s)	1001
MlyI	GAGTC	3 cut(s)	173, 659, 799
MmeI	TCCRAC	3 cut(s)	855, 894, 1077
Mox20I	TGGCCA	1 cut(s)	1001
Mph1103I	ATGCAT	1 cut(s)	566
MroXI	GAANNNNTTC	1 cut(s)	1267
MscI	TGGCCA	1 cut(s)	1001
MseI	TTAA	7 cut(s)	65, 360, 857, 948, 1077, 1200, 1215
Msp20I	TGGCCA	1 cut(s)	1001
MspI	CCGG	1 cut(s)	1226
MspR9I	CCNGG	1 cut(s)	575
Mva1269I	GAATGC	2 cut(s)	566, 700
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	1 cut(s)	570
NcoI	CCATGG	2 cut(s)	170, 952
NdeII	GATC	2 cut(s)	1025, 1189
NlaIII	CATG	8 cut(s)	174, 401, 457, 620, 639, 683, 805, 956
NlaIV	GGNNCC	4 cut(s)	176, 250, 613, 907
NmuCI	GTSAC	1 cut(s)	457
NsiI	ATGCAT	1 cut(s)	566
NspV	TTCGAA	1 cut(s)	439
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	2 cut(s)	566, 700
PdmI	GAANNNNTTC	1 cut(s)	1267
PfeI	GAWTC	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	279, 642, 1132
PleI	GAGTC	3 cut(s)	172, 659, 799
PpsI	GAGTC	3 cut(s)	172, 659, 799
PsiI	TTATAA	1 cut(s)	647
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	4 cut(s)	176, 250, 613, 907
PspPI	GGNCC	3 cut(s)	174, 970, 1112
RsaI	GTAC	2 cut(s)	310, 381
RsaNI	GTAC	2 cut(s)	309, 380
SaqAI	TTAA	7 cut(s)	65, 360, 857, 948, 1077, 1200, 1215
SatI	GCNGC	3 cut(s)	278, 641, 1131
Sau3AI	GATC	2 cut(s)	1025, 1189
Sau96I	GGNCC	3 cut(s)	174, 970, 1112
SchI	GAGTC	3 cut(s)	173, 659, 799
ScrFI	CCNGG	1 cut(s)	575
SetI	ASST	8 cut(s)	376, 388, 419, 489, 947, 1124, 1206, 1221
SfaNI	GCATC	1 cut(s)	1275
SfcI	CTRYAG	1 cut(s)	16
SfuI	TTCGAA	1 cut(s)	439
SinI	GGWCC	1 cut(s)	174
Sse9I	AATT	9 cut(s)	5, 11, 25, 61, 435, 469, 818, 826, 1041
SsiI	CCGC	1 cut(s)	640
StyD4I	CCNGG	1 cut(s)	573
StyI	CCWWGG	2 cut(s)	170, 952
TaaI	ACNGT	5 cut(s)	353, 628, 659, 762, 1250
TaqI	TCGA	3 cut(s)	51, 439, 1271
TasI	AATT	9 cut(s)	5, 11, 25, 61, 435, 469, 818, 826, 1041
TauI	GCSGC	1 cut(s)	643
TfiI	GAWTC	1 cut(s)	71
Tru1I	TTAA	7 cut(s)	65, 360, 857, 948, 1077, 1200, 1215
Tru9I	TTAA	7 cut(s)	65, 360, 857, 948, 1077, 1200, 1215
TscAI	CASTG	6 cut(s)	86, 224, 245, 301, 662, 1027
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	2 cut(s)	277, 1130
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	3 cut(s)	442, 696, 1095
TspGWI	ACGGA	1 cut(s)	918
TspRI	CASTG	6 cut(s)	86, 224, 245, 301, 662, 1027
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	4 cut(s)	11, 25, 435, 826
XcmI	CCANNNNNNNNNTGG	2 cut(s)	168, 658
XmiI	GTMKAC	1 cut(s)	605
XmnI	GAANNNNTTC	1 cut(s)	1267
Zsp2I	ATGCAT	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.