Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0004527

Physical Location & Seq

Genomic Coordinates Reverse (-)

4542415 .. 4543787

Gene Structure 1373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G063300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1224 bp

ATGCCATGGAGTTCAATTGTGAGAAAAACCTCTGGAGCTTCATGGATGCGGAAAGAAAGAGAATCAAGTTGCCTCGGAGACTTTCTTTTGGTGGTGACCAGCAACAATCATCAGAAACCAACAACATTCATTCAGCTTCTTCAGCAAGACCTTCTGTTGCTGCTTCTGAACCATCAATTCCTACACGGCCTACGAGCCCTGGGACACCATGGACACTATCCCCAGTGCGCACCTCTCCCTCCCAACCCCTTCTTTACCATTGCATTGCCTCCCTCCACCGACATGAAGGCTGCTTCAGGTCAAGTTCGAGCCATCTTGTCCTCAGGGAAAATGCTATTCACCACACATGGTGACTGCAAAGTTCGCATATGGGATGCGTCCACTGCAGAGAATTTTAGGCCGAAAAAGGTCACAACTCTGCCTCAAAGAAATCGATTTTTGTTCTTTTCAAGAAAGAGCAGCCAGCAGCACAATGATCACATCTCTTGCCTAGCTTACAACAAGGAAGACAAGCTGTTGTACACAGGCTCGTGGGACAAAACAGTCAAAGCTTGGAAGATCAACGAGAGGTGTTGTGTGGATTCATTTGTGGCTCATGAAGGTCAAGTAAATGGGATTGTCATCAACCAAGAAGATGGTTGTGTTTTCACTTGCTCCTCAGATGGCTCAGTCAAAATCTGGAGAAGGGTGTTTGGTGAAAGTTCTCACATTCTGACCATGACTCTCAAGTTCCAGCTTTCGCCAGTGAATGCCTTGGCATTGAGCTCGTCACCGAACACCACCCTCCTCTACTCTGGCTCATCAGATGGGCTTATAAACTTTTGGGAGAAGGAGAAGATGTCTGGGAGGTACAACCATGGAGGGTTTCTGCAAGGTCATCATTTTGCTGTTCTTTGCTTGGTAGCCTTAGGAGAATTAGTCTTCAAGGAAGGGAATTGCTTCCATTCATGCATTTCTGTGATTGAAGGCCATCATGGGCCAGTAAGATGCTTAGCAGTTTCTTTGGAAACAGAGAATGTGGTGGGGGTGAAGGGTTTGTTGGTTTATAGTGCAAGCTTGGACCAAACTTTTAAGGTATGGAGGGTCAAAGTTTTTCCCACAGAGAAGGTAAACATGGATGAGTCCGCCAAAGACCCACAAAGAGAGATTGTGGAGTGTGAGACAAGTCCAGTGCTGTCACCTTCATGGGTAGAGAAAAAGCTTCTAGGCAACTATTTCCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00565 ko01100 map00565 map01100

Pfam Domains

Protein Families

WD40

Protein Analysis

408

Amino Acids

45.63

Weight (kDa)

8.71

Isoelectric Point (pI)

41.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004527)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g35690 FvH4_6g31961
malus_domestica	MD08G1115200.v1.1 MD09G1207500.v1.1 MD17G1188800.v1.1
prunus_persica	Prupe.1G449400_v2.0.a1 Prupe.3G063300_v2.0.a1
pyrus_communis	pycom09g12370
rosa_chinensis	RchiOBHm_Chr2g0139471 RchiOBHm_Chr6g0306111
rosa_laevigata	RLG00000010824 RLG00000019813
rosa_multiflora	Rmu_sc0000785.1_g000023 Rmu_sc0000903.1_g000022 Rmu_sc0001983.1_g000002
rosa_roxburghii	Rroxscaffold_2G00105410 Rroxscaffold_7G00162050
rosa_rugosa	Rorug06G0282100 Rorug06G0346800
rosa_samantha	Rh2AG407500 Rh2BG418100 Rh2CG393500 Rh2DG426900 Rh6AG459200 Rh6BG441700 Rh6CG473700 Rh6DG459900
rosa_wichuraiana	Rw2G033010 Rw2G033270 Rw6G006540 Rw6G040030 Rw7G016590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	815
AasI	GACNNNNNNGTC	1 cut(s)	542
Acc16I	TGCGCA	1 cut(s)	229
AciI	CCGC	2 cut(s)	49, 1125
AcsI	RAATTY	1 cut(s)	391
AcuI	CTGAAG	2 cut(s)	125, 279
AdeI	CACNNNGTG	1 cut(s)	350
AfaI	GTAC	2 cut(s)	521, 851
AgsI	TTSAA	4 cut(s)	15, 450, 925, 965
AjnI	CCWGG	1 cut(s)	198
AjuI	GAANNNNNNNTTGG	2 cut(s)	1022, 1054
AluBI	AGCT	9 cut(s)	38, 136, 494, 514, 551, 736, 765, 1056, 1201
AluI	AGCT	9 cut(s)	38, 136, 494, 514, 551, 736, 765, 1056, 1201
Alw21I	GWGCWC	1 cut(s)	767
Alw26I	GTCTC	2 cut(s)	72, 1154
AoxI	GGCC	4 cut(s)	187, 398, 967, 977
ApeKI	GCWGC	4 cut(s)	160, 290, 459, 466
ApoI	RAATTY	1 cut(s)	391
Asp700I	GAANNNNTTC	1 cut(s)	938
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	977, 1060
AsuHPI	GGTGA	7 cut(s)	106, 331, 362, 707, 762, 1039, 1170
AvaII	GGWCC	1 cut(s)	1060
AxyI	CCTNAGG	2 cut(s)	322, 907
BanII	GRGCYC	2 cut(s)	199, 767
BauI	CACGAG	1 cut(s)	529
BbsI	GAAGAC	2 cut(s)	513, 913
Bbv12I	GWGCWC	1 cut(s)	767
BbvI	GCAGC	4 cut(s)	147, 277, 471, 478
BccI	CCATC	6 cut(s)	180, 320, 629, 656, 800, 978
BceAI	ACGGC	1 cut(s)	202
BcgI	CGANNNNNNTGC	2 cut(s)	747, 781
BciT130I	CCWGG	1 cut(s)	200
BclI	TGATCA	1 cut(s)	475
BcoDI	GTCTC	2 cut(s)	72, 1154
BfaI	CTAG	2 cut(s)	491, 1205
BfmI	CTRYAG	1 cut(s)	384
BisI	GCNGC	4 cut(s)	161, 291, 460, 467
BlpI	GCTNAGC	1 cut(s)	991
BlsI	GCNGC	4 cut(s)	162, 292, 461, 468
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	1060
BmgT120I	GGNCC	2 cut(s)	977, 1060
BmrFI	CCNGG	1 cut(s)	200
BmrI	ACTGGG	1 cut(s)	217
BmsI	GCATC	3 cut(s)	36, 364, 977
BmuI	ACTGGG	1 cut(s)	217
BpiI	GAAGAC	2 cut(s)	513, 913
BpmI	CTGGAG	2 cut(s)	54, 700
Bpu1102I	GCTNAGC	1 cut(s)	991
BpuEI	CTTGAG	1 cut(s)	710
Bsa29I	ATCGAT	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	620
BsaJI	CCNNGG	7 cut(s)	5, 73, 198, 199, 208, 753, 856
BsaXI	ACNNNNNCTCC	4 cut(s)	824, 854, 903, 933
Bse1I	ACTGG	5 cut(s)	223, 743, 980, 1169, 1219
Bse21I	CCTNAGG	2 cut(s)	322, 907
Bse3DI	GCAATG	2 cut(s)	258, 263
Bse8I	GATNNNNATC	1 cut(s)	620
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	433
BseDI	CCNNGG	7 cut(s)	5, 73, 198, 199, 208, 753, 856
BseGI	GGATG	3 cut(s)	51, 379, 1123
BseJI	GATNNNNATC	1 cut(s)	620
BseMI	GCAATG	2 cut(s)	258, 263
BseMII	CTCAG	3 cut(s)	336, 672, 681
BseNI	ACTGG	5 cut(s)	223, 743, 980, 1169, 1219
BseRI	GAGGAG	2 cut(s)	646, 776
BseXI	GCAGC	4 cut(s)	147, 277, 471, 478
BshFI	GGCC	4 cut(s)	189, 400, 969, 979
BshVI	ATCGAT	1 cut(s)	433
BsiHKAI	GWGCWC	1 cut(s)	767
BslFI	GGGAC	2 cut(s)	216, 548
BsmAI	GTCTC	2 cut(s)	72, 1154
BsmFI	GGGAC	2 cut(s)	216, 548
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	4 cut(s)	189, 400, 969, 979
Bsp1286I	GDGCHC	2 cut(s)	199, 767
Bsp1407I	TGTACA	1 cut(s)	519
Bsp143I	GATC	2 cut(s)	475, 558
Bsp1720I	GCTNAGC	1 cut(s)	991
Bsp19I	CCATGG	3 cut(s)	5, 208, 856
BspACI	CCGC	2 cut(s)	49, 1125
BspANI	GGCC	4 cut(s)	189, 400, 969, 979
BspCNI	CTCAG	3 cut(s)	335, 671, 680
BspDI	ATCGAT	1 cut(s)	433
BspHI	TCATGA	1 cut(s)	595
BspMAI	CTGCAG	1 cut(s)	388
BsrDI	GCAATG	2 cut(s)	258, 263
BsrGI	TGTACA	1 cut(s)	519
BsrI	ACTGG	5 cut(s)	223, 743, 980, 1169, 1219
BssECI	CCNNGG	7 cut(s)	5, 73, 198, 199, 208, 753, 856
BssMI	GATC	2 cut(s)	475, 558
BssSI	CACGAG	1 cut(s)	529
BssT1I	CCWWGG	4 cut(s)	5, 208, 753, 856
Bst2BI	CACGAG	1 cut(s)	529
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	544
BstAUI	TGTACA	1 cut(s)	519
BstC8I	GCNNGC	2 cut(s)	464, 1054
BstDEI	CTNAG	5 cut(s)	322, 658, 667, 907, 991
BstDSI	CCRYGG	3 cut(s)	5, 208, 856
BstEII	GGTNACC	1 cut(s)	94
BstF5I	GGATG	3 cut(s)	51, 379, 1123
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	2 cut(s)	478, 561
BstMAI	GTCTC	2 cut(s)	72, 1154
BstMBI	GATC	2 cut(s)	475, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 363, 383
BstNI	CCWGG	1 cut(s)	200
BstPI	GGTNACC	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	198
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	4 cut(s)	147, 277, 471, 478
BstV2I	GAAGAC	2 cut(s)	513, 913
BstXI	CCANNNNNNTGG	1 cut(s)	635
Bsu15I	ATCGAT	1 cut(s)	433
Bsu36I	CCTNAGG	2 cut(s)	322, 907
BsuRI	GGCC	4 cut(s)	189, 400, 969, 979
BsuTUI	ATCGAT	1 cut(s)	433
BtgI	CCRYGG	3 cut(s)	5, 208, 856
BtsCI	GGATG	3 cut(s)	51, 379, 1123
BtsI	GCAGTG	1 cut(s)	381
BtsIMutI	CAGTG	4 cut(s)	230, 381, 750, 1176
Cac8I	GCNNGC	2 cut(s)	464, 1054
CciI	TCATGA	1 cut(s)	595
CfoI	GCGC	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	977, 1060
ClaI	ATCGAT	1 cut(s)	433
CseI	GACGC	1 cut(s)	366
Csp6I	GTAC	2 cut(s)	520, 850
CviQI	GTAC	2 cut(s)	520, 850
DdeI	CTNAG	5 cut(s)	322, 658, 667, 907, 991
DpnI	GATC	2 cut(s)	477, 560
DpnII	GATC	2 cut(s)	475, 558
DraIII	CACNNNGTG	1 cut(s)	350
DrdI	GACNNNNNNGTC	1 cut(s)	542
DseDI	GACNNNNNNGTC	1 cut(s)	542
EciI	GGCGGA	1 cut(s)	1114
Ecl136II	GAGCTC	1 cut(s)	765
Eco130I	CCWWGG	4 cut(s)	5, 208, 753, 856
Eco24I	GRGCYC	2 cut(s)	199, 767
Eco47I	GGWCC	1 cut(s)	1060
Eco53kI	GAGCTC	1 cut(s)	765
Eco57I	CTGAAG	2 cut(s)	125, 279
Eco81I	CCTNAGG	2 cut(s)	322, 907
Eco91I	GGTNACC	1 cut(s)	94
EcoICRI	GAGCTC	1 cut(s)	765
EcoO65I	GGTNACC	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	198
EcoT14I	CCWWGG	4 cut(s)	5, 208, 753, 856
EcoT22I	ATGCAT	1 cut(s)	953
EcoT38I	GRGCYC	2 cut(s)	199, 767
ErhI	CCWWGG	4 cut(s)	5, 208, 753, 856
FaqI	GGGAC	2 cut(s)	216, 548
FauNDI	CATATG	1 cut(s)	368
FbaI	TGATCA	1 cut(s)	475
Fnu4HI	GCNGC	4 cut(s)	161, 291, 460, 467
FokI	GGATG	3 cut(s)	58, 386, 1130
FriOI	GRGCYC	2 cut(s)	199, 767
Fsp4HI	GCNGC	4 cut(s)	161, 291, 460, 467
FspAI	RTGCGCAY	1 cut(s)	229
FspBI	CTAG	2 cut(s)	491, 1205
FspI	TGCGCA	1 cut(s)	229
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	4 cut(s)	161, 291, 460, 467
GsuI	CTGGAG	2 cut(s)	54, 700
HaeIII	GGCC	4 cut(s)	189, 400, 969, 979
HgaI	GACGC	1 cut(s)	366
HhaI	GCGC	1 cut(s)	230
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HindIII	AAGCTT	3 cut(s)	549, 1054, 1199
HinfI	GANTC	4 cut(s)	62, 581, 721, 1121
HphI	GGTGA	7 cut(s)	106, 331, 362, 707, 762, 1039, 1170
Hpy166II	GTNNAC	3 cut(s)	381, 522, 1111
Hpy188I	TCNGA	6 cut(s)	77, 114, 168, 661, 714, 805
Hpy188III	TCNNGA	4 cut(s)	33, 450, 596, 679
Hpy8I	GTNNAC	3 cut(s)	381, 522, 1111
HpyCH4III	ACNGT	1 cut(s)	544
HpyCH4V	TGCA	6 cut(s)	263, 357, 386, 871, 951, 1052
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 363, 383
HpyF3I	CTNAG	5 cut(s)	322, 658, 667, 907, 991
HspAI	GCGC	1 cut(s)	228
Ksp22I	TGATCA	1 cut(s)	475
Kzo9I	GATC	2 cut(s)	475, 558
LmnI	GCTCC	2 cut(s)	35, 659
Lsp1109I	GCAGC	4 cut(s)	147, 277, 471, 478
LweI	GCATC	3 cut(s)	36, 364, 977
MaeI	CTAG	2 cut(s)	491, 1205
MaeIII	GTNAC	5 cut(s)	94, 350, 409, 768, 1176
MalI	GATC	2 cut(s)	477, 560
MboI	GATC	2 cut(s)	475, 558
MboII	GAAGA	6 cut(s)	131, 518, 568, 644, 847, 913
MfeI	CAATTG	1 cut(s)	15
MhlI	GDGCHC	2 cut(s)	199, 767
MluCI	AATT	5 cut(s)	15, 176, 391, 914, 934
MlyI	GAGTC	2 cut(s)	715, 1130
Mph1103I	ATGCAT	1 cut(s)	953
MroXI	GAANNNNTTC	1 cut(s)	938
MseI	TTAA	1 cut(s)	1071
MslI	CAYNNNNRTG	3 cut(s)	281, 956, 1183
MspR9I	CCNGG	1 cut(s)	200
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	754
MvaI	CCWGG	1 cut(s)	200
MwoI	GCNNNNNNNGC	3 cut(s)	142, 363, 383
NcoI	CCATGG	3 cut(s)	5, 208, 856
NdeI	CATATG	1 cut(s)	368
NdeII	GATC	2 cut(s)	475, 558
NmuCI	GTSAC	5 cut(s)	94, 350, 409, 768, 1176
NsbI	TGCGCA	1 cut(s)	229
NsiI	ATGCAT	1 cut(s)	953
PagI	TCATGA	1 cut(s)	595
PasI	CCCWGGG	1 cut(s)	199
PctI	GAATGC	1 cut(s)	754
PdmI	GAANNNNTTC	1 cut(s)	938
PfeI	GAWTC	2 cut(s)	62, 581
PkrI	GCNGC	4 cut(s)	162, 292, 461, 468
PleI	GAGTC	2 cut(s)	715, 1129
PpsI	GAGTC	2 cut(s)	715, 1129
PsiI	TTATAA	1 cut(s)	815
Psp124BI	GAGCTC	1 cut(s)	767
Psp6I	CCWGG	1 cut(s)	198
PspEI	GGTNACC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	977, 1060
PstI	CTGCAG	1 cut(s)	388
RsaI	GTAC	2 cut(s)	521, 851
RsaNI	GTAC	2 cut(s)	520, 850
RseI	CAYNNNNRTG	3 cut(s)	281, 956, 1183
SacI	GAGCTC	1 cut(s)	767
SaqAI	TTAA	1 cut(s)	1071
SatI	GCNGC	4 cut(s)	161, 291, 460, 467
Sau3AI	GATC	2 cut(s)	475, 558
Sau96I	GGNCC	2 cut(s)	977, 1060
SchI	GAGTC	2 cut(s)	715, 1130
ScrFI	CCNGG	1 cut(s)	200
SduI	GDGCHC	2 cut(s)	199, 767
SfaNI	GCATC	3 cut(s)	36, 364, 977
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	1060
SmiMI	CAYNNNNRTG	3 cut(s)	281, 956, 1183
SmlI	CTYRAG	1 cut(s)	725
SmoI	CTYRAG	1 cut(s)	725
Sse9I	AATT	5 cut(s)	15, 176, 391, 914, 934
SsiI	CCGC	2 cut(s)	49, 1125
SspMI	CTAG	2 cut(s)	491, 1205
SstI	GAGCTC	1 cut(s)	767
StyD4I	CCNGG	1 cut(s)	198
StyI	CCWWGG	4 cut(s)	5, 208, 753, 856
TaaI	ACNGT	1 cut(s)	544
TaqI	TCGA	2 cut(s)	307, 433
TasI	AATT	5 cut(s)	15, 176, 391, 914, 934
TatI	WGTACW	1 cut(s)	519
TfiI	GAWTC	2 cut(s)	62, 581
Tru1I	TTAA	1 cut(s)	1071
Tru9I	TTAA	1 cut(s)	1071
TscAI	CASTG	4 cut(s)	230, 388, 750, 1176
TseFI	GTSAC	5 cut(s)	94, 350, 409, 768, 1176
TseI	GCWGC	4 cut(s)	160, 290, 459, 466
Tsp45I	GTSAC	5 cut(s)	94, 350, 409, 768, 1176
TspDTI	ATGAA	7 cut(s)	30, 118, 299, 573, 612, 936, 1173
TspRI	CASTG	4 cut(s)	230, 388, 750, 1176
VpaK11BI	GGWCC	1 cut(s)	1060
XapI	RAATTY	1 cut(s)	391
XmnI	GAANNNNTTC	1 cut(s)	938
XspI	CTAG	2 cut(s)	491, 1205
Zsp2I	ATGCAT	1 cut(s)	953

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.