FvH4_2g40120

Sucrose transport

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
28660864 .. 28663047
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g40120.t1

Sequence Viewer

Length: 1491 bp
ATGGAGGTTGAGGCCGCGAACTCGCCGGAGAAGTCAAGCTCGATAAGTAAGATAACACTGGTGGCCTCCATCGCTGCCGGAGTGCAATTCGGTTGGGCGTTGCAGCTGTCCTTGCTAACACCCTACGTCCAACAACTAGGGGTTCCACACAAATGGGCCGCCGTTGTCTGGCTGTGCGGGCCCATCTCAGGTTTGCTGGTGCAACCCATCGTCGGTTACTATAGCGACCGCTGCAGATCTCGCTTTGGTCGCCGCCGGCCGTTCATAGCCGCTGGTGCCGCGCTTGTCGCCATCGCCGTCTTCCTCATTGGATACGCCGCCGACATAGGTGTCCGGTCCGGCGACTCGTTGCATAAATCGACGAAGCCGAGAGCCGTGCTTGTGTTTGTGGTAGGGTTTTGGATCTTGGACGTGGCTAACAATATGTTACAAGGCCCCTGTCGCGCTCTTTTGGCCGACATCTCCGGTTCCGATACCAAGAAGATGAGGACAGCCAACGCACTGTACTCGTTCTTCATGGCTGTCGGAAACGTGCTTGGATATGCTGCCGGATCTTTGAAGAATCTACACAAGGTGTTTCCTTTCACTGTTACCAAAGCCTGTGATATGTACTGTGCCAATCTTAAAAGCTGTTTCTTCATATCCATTGCTCTGCTTGCGGTACTCACCGTGATGGTTATGGTGTCTGTACGTGAGAAAACGATGCCTAGTCGTGATGACGAGAAAGGCGAGGGAGGAGTGAGGTTCGTCGGAGAAATTATAGGCGCTTTTAAGGAGTTGAAGAAGCCGATGTGGATCCTGCTTTTGGTAACATGCTTGAACTGGATTGCGTGGTTCGGATTCTTACTATTCGACACGGATTGGATGGGGAAAGAGGTGTACGGAGGTGCGGTCGGGAAAGGGCGTCTGTACGACATGGGAGTTAGGGCTGGTTCACTTGGGCTCATGCTGAACGCTGTCGTTTTGGGAGTCATGTCTCTTGGAATTGTCTACTTGGCCCGTGGGGTTAACAGCGCTAGACAACTCTGGGGTGTGGTCAATTTTTTGTTAGCCCTTTGCCTGCTGATGACCATATTGGTGACAAAGTTGGCAGAGAAGCATCGACATGCCTCTCACGTCGTTGCCGGAGCTGAGCCTCCGCCTCCCCCTGCTGGTATCAAGGCCGGCGCATTGCTTATATTTGCGATTTTGGGGATACCACAAGCGGTGACCTTCAGCATTCCCTTTGCCATGGCCTCCATATTTTGCAGCAACTCTGGTGCAGGACAAGGGCTTTCTTTGGGAGTCTTGAATATATCAATTGTCGTACCACAGATGTTTGTTTCTCTAGTAAGTGGACCACTTGATTCTGCTTTCGGAGGAGGTAACTTACCGGCGTTTGTTCTGGGAGCCATTGCTGCTGTAGTAAGTGGAGTATTGGCCTTGACTCTTCTACCATCTCCTCCACCTGATCGTGAAACTGAAACTGTTGTGGCTGCTGGCTTCCATTAA

Protein Analysis

497

Amino Acids

52.58

Weight (kDa)

9.35

Isoelectric Point (pI)

33.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_2 PF13347 30 - 278 1.7e-14 MFS/sugar transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 329
AccB1I GGYRCC 1 cut(s) 275
AccI GTMKAC 1 cut(s) 990
AccII CGCG 3 cut(s) 17, 281, 444
AclWI GGATC 4 cut(s) 410, 559, 790, 803
AcoI YGGCCR 2 cut(s) 257, 453
AcuI CTGAAG 1 cut(s) 1198
AcyI GRCGYC 1 cut(s) 904
AdeI CACNNNGTG 1 cut(s) 574
AfaI GTAC 7 cut(s) 506, 611, 663, 690, 881, 911, 1308
AfeI AGCGCT 1 cut(s) 1015
AfiI CCNNNNNNNGG 5 cut(s) 168, 188, 212, 805, 1151
AgsI TTSAA 4 cut(s) 559, 781, 820, 1291
AjiI CACGTC 2 cut(s) 412, 1117
AluBI AGCT 4 cut(s) 39, 106, 630, 1130
AluI AGCT 4 cut(s) 39, 106, 630, 1130
Alw26I GTCTC 1 cut(s) 981
AlwI GGATC 4 cut(s) 410, 559, 790, 803
Aor51HI AGCGCT 1 cut(s) 1015
ApaI GGGCCC 1 cut(s) 183
ApeKI GCWGC 7 cut(s) 74, 103, 231, 545, 1248, 1397, 1475
AspLEI GCGC 5 cut(s) 283, 446, 767, 1016, 1169
AspS9I GGNCC 7 cut(s) 156, 179, 180, 336, 434, 997, 1337
AsuHPI GGTGA 3 cut(s) 658, 1090, 1219
AvaII GGWCC 2 cut(s) 336, 1337
BaeGI GKGCMC 1 cut(s) 183
BamHI GGATCC 1 cut(s) 795
BanI GGYRCC 1 cut(s) 275
BanII GRGCYC 2 cut(s) 183, 945
BarI GAAGNNNNNNTAC 2 cut(s) 497, 529
BbsI GAAGAC 1 cut(s) 292
BbvI GCAGC 7 cut(s) 61, 115, 218, 532, 1260, 1384, 1462
BccI CCATC 7 cut(s) 77, 191, 215, 299, 667, 859, 1444
BceAI ACGGC 4 cut(s) 146, 244, 281, 359
BcgI CGANNNNNNTGC 4 cut(s) 358, 392, 489, 523
BciVI GTATCC 2 cut(s) 305, 1188
BcoDI GTCTC 1 cut(s) 981
BfaI CTAG 4 cut(s) 137, 708, 1017, 1328
BfmI CTRYAG 3 cut(s) 220, 232, 1401
BfoI RGCGCY 2 cut(s) 768, 1017
BfuI GTATCC 2 cut(s) 305, 1188
BglII AGATCT 1 cut(s) 236
BlpI GCTNAGC 1 cut(s) 1131
Bme18I GGWCC 2 cut(s) 336, 1337
BmgBI CACGTC 2 cut(s) 412, 1117
BmgT120I GGNCC 7 cut(s) 156, 179, 180, 336, 434, 997, 1337
BmiI GGNNCC 7 cut(s) 144, 181, 277, 436, 469, 797, 1390
BmsI GCATC 2 cut(s) 693, 1108
BpiI GAAGAC 1 cut(s) 292
Bpu1102I GCTNAGC 1 cut(s) 1131
BsaAI YACGTR 1 cut(s) 692
BsaBI GATNNNNATC 1 cut(s) 794
BsaHI GRCGYC 1 cut(s) 904
BsaJI CCNNGG 2 cut(s) 1000, 1230
BsaWI WCCGGW 2 cut(s) 333, 464
BsaXI ACNNNNNCTCC 2 cut(s) 876, 906
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 188, 212, 805, 1151
Bse118I RCCGGY 3 cut(s) 255, 1163, 1372
Bse1I ACTGG 2 cut(s) 63, 827
Bse3DI GCAATG 3 cut(s) 645, 1169, 1392
Bse8I GATNNNNATC 1 cut(s) 794
BseDI CCNNGG 2 cut(s) 1000, 1230
BseGI GGATG 1 cut(s) 870
BseJI GATNNNNATC 1 cut(s) 794
BseLI CCNNNNNNNGG 5 cut(s) 168, 188, 212, 805, 1151
BseMI GCAATG 3 cut(s) 645, 1169, 1392
BseMII CTCAG 2 cut(s) 201, 1122
BseNI ACTGG 2 cut(s) 63, 827
BseRI GAGGAG 3 cut(s) 750, 1374, 1431
BseSI GKGCMC 1 cut(s) 183
BseX3I CGGCCG 1 cut(s) 257
BseXI GCAGC 7 cut(s) 61, 115, 218, 532, 1260, 1384, 1462
BsgI GTGCAG 1 cut(s) 1281
Bsh1236I CGCG 3 cut(s) 17, 281, 444
Bsh1285I CGRYCG 3 cut(s) 229, 260, 894
BshNI GGYRCC 1 cut(s) 275
BsiEI CGRYCG 3 cut(s) 229, 260, 894
BslI CCNNNNNNNGG 5 cut(s) 168, 188, 212, 805, 1151
BsmAI GTCTC 1 cut(s) 981
BsmI GAATGC 1 cut(s) 1218
Bsp120I GGGCCC 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 183, 945
Bsp143I GATC 5 cut(s) 236, 402, 551, 795, 1450
Bsp1720I GCTNAGC 1 cut(s) 1131
Bsp19I CCATGG 1 cut(s) 1230
BspCNI CTCAG 2 cut(s) 200, 1123
BspFNI CGCG 3 cut(s) 17, 281, 444
BspLI GGNNCC 7 cut(s) 144, 181, 277, 436, 469, 797, 1390
BspMAI CTGCAG 1 cut(s) 236
BspPI GGATC 4 cut(s) 410, 559, 790, 803
BspT107I GGYRCC 1 cut(s) 275
BsrDI GCAATG 3 cut(s) 645, 1169, 1392
BsrFI RCCGGY 3 cut(s) 255, 1163, 1372
BsrI ACTGG 2 cut(s) 63, 827
BssAI RCCGGY 3 cut(s) 255, 1163, 1372
BssECI CCNNGG 2 cut(s) 1000, 1230
BssMI GATC 5 cut(s) 236, 402, 551, 795, 1450
BssNI GRCGYC 1 cut(s) 904
BssT1I CCWWGG 1 cut(s) 1230
Bst4CI ACNGT 5 cut(s) 504, 589, 614, 670, 1468
Bst6I CTCTTC 1 cut(s) 1434
BstACI GRCGYC 1 cut(s) 904
BstBAI YACGTR 1 cut(s) 692
BstC8I GCNNGC 6 cut(s) 179, 257, 657, 1061, 1165, 1480
BstDEI CTNAG 2 cut(s) 187, 1131
BstDSI CCRYGG 2 cut(s) 1000, 1230
BstEII GGTNACC 1 cut(s) 1207
BstF5I GGATG 1 cut(s) 870
BstFNI CGCG 3 cut(s) 17, 281, 444
BstH2I RGCGCY 2 cut(s) 768, 1017
BstHHI GCGC 5 cut(s) 283, 446, 767, 1016, 1169
BstKTI GATC 5 cut(s) 239, 405, 554, 798, 1453
BstMAI GTCTC 1 cut(s) 981
BstMBI GATC 5 cut(s) 236, 402, 551, 795, 1450
BstMCI CGRYCG 3 cut(s) 229, 260, 894
BstNSI RCATGY 2 cut(s) 816, 1109
BstPI GGTNACC 1 cut(s) 1207
BstSFI CTRYAG 3 cut(s) 220, 232, 1401
BstSLI GKGCMC 1 cut(s) 183
BstUI CGCG 3 cut(s) 17, 281, 444
BstV1I GCAGC 7 cut(s) 61, 115, 218, 532, 1260, 1384, 1462
BstV2I GAAGAC 1 cut(s) 292
BstX2I RGATCY 4 cut(s) 236, 402, 551, 795
BstXI CCANNNNNNTGG 1 cut(s) 153
BstYI RGATCY 4 cut(s) 236, 402, 551, 795
BstZI CGGCCG 1 cut(s) 257
BsuI GTATCC 2 cut(s) 305, 1188
BtgI CCRYGG 2 cut(s) 1000, 1230
BtgZI GCGATG 2 cut(s) 55, 277
BtrI CACGTC 2 cut(s) 412, 1117
BtsCI GGATG 1 cut(s) 870
BtsIMutI CAGTG 3 cut(s) 56, 500, 585
Cac8I GCNNGC 6 cut(s) 179, 257, 657, 1061, 1165, 1480
CfoI GCGC 5 cut(s) 283, 446, 767, 1016, 1169
Cfr10I RCCGGY 3 cut(s) 255, 1163, 1372
Cfr13I GGNCC 7 cut(s) 156, 179, 180, 336, 434, 997, 1337
CpoI CGGWCCG 1 cut(s) 336
CseI GACGC 1 cut(s) 893
Csp6I GTAC 7 cut(s) 505, 610, 662, 689, 880, 910, 1307
CspI CGGWCCG 1 cut(s) 336
CviAII CATG 7 cut(s) 517, 813, 916, 946, 973, 1106, 1231
CviQI GTAC 7 cut(s) 505, 610, 662, 689, 880, 910, 1307
DdeI CTNAG 2 cut(s) 187, 1131
DpnI GATC 5 cut(s) 238, 404, 553, 797, 1452
DpnII GATC 5 cut(s) 236, 402, 551, 795, 1450
DraIII CACNNNGTG 1 cut(s) 574
DrdI GACNNNNNNGTC 1 cut(s) 329
DseDI GACNNNNNNGTC 1 cut(s) 329
EaeI YGGCCR 2 cut(s) 257, 453
EagI CGGCCG 1 cut(s) 257
Eam1104I CTCTTC 1 cut(s) 1434
EarI CTCTTC 1 cut(s) 1434
EciI GGCGGA 1 cut(s) 1128
EclXI CGGCCG 1 cut(s) 257
Eco130I CCWWGG 1 cut(s) 1230
Eco24I GRGCYC 2 cut(s) 183, 945
Eco47I GGWCC 2 cut(s) 336, 1337
Eco47III AGCGCT 1 cut(s) 1015
Eco52I CGGCCG 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 1198
Eco91I GGTNACC 1 cut(s) 1207
EcoO109I RGGNCCY 1 cut(s) 434
EcoO65I GGTNACC 1 cut(s) 1207
EcoT14I CCWWGG 1 cut(s) 1230
EcoT38I GRGCYC 2 cut(s) 183, 945
ErhI CCWWGG 1 cut(s) 1230
FaeI CATG 7 cut(s) 520, 816, 919, 949, 976, 1109, 1234
FatI CATG 7 cut(s) 516, 812, 915, 945, 972, 1105, 1230
FauI CCCGC 1 cut(s) 170
FblI GTMKAC 1 cut(s) 990
FokI GGATG 1 cut(s) 877
FriOI GRGCYC 2 cut(s) 183, 945
FspBI CTAG 4 cut(s) 137, 708, 1017, 1328
GlaI GCGC 5 cut(s) 282, 445, 766, 1015, 1168
HaeII RGCGCY 2 cut(s) 768, 1017
HgaI GACGC 1 cut(s) 893
HhaI GCGC 5 cut(s) 283, 446, 767, 1016, 1169
Hin1I GRCGYC 1 cut(s) 904
Hin1II CATG 7 cut(s) 520, 816, 919, 949, 976, 1109, 1234
Hin6I GCGC 5 cut(s) 281, 444, 765, 1014, 1167
HinP1I GCGC 5 cut(s) 281, 444, 765, 1014, 1167
HincII GTYRAC 1 cut(s) 1009
HindII GTYRAC 1 cut(s) 1009
HinfI GANTC 7 cut(s) 344, 562, 840, 969, 1284, 1346, 1426
HpaI GTTAAC 1 cut(s) 1009
HphI GGTGA 3 cut(s) 658, 1090, 1219
Hpy166II GTNNAC 5 cut(s) 880, 935, 991, 1009, 1337
Hpy188I TCNGA 5 cut(s) 472, 527, 752, 839, 1358
Hpy188III TCNNGA 4 cut(s) 713, 895, 1288, 1454
Hpy8I GTNNAC 5 cut(s) 880, 935, 991, 1009, 1337
Hpy99I CGWCG 4 cut(s) 215, 364, 752, 1121
HpyAV CCTTC 1 cut(s) 1222
HpyCH4III ACNGT 5 cut(s) 504, 589, 614, 670, 1468
HpyCH4IV ACGT 5 cut(s) 126, 411, 531, 691, 1116
HpyCH4V TGCA 7 cut(s) 85, 103, 202, 234, 352, 1248, 1262
HpyF3I CTNAG 2 cut(s) 187, 1131
HpySE526I ACGT 5 cut(s) 126, 411, 531, 691, 1116
Hsp92I GRCGYC 1 cut(s) 904
Hsp92II CATG 7 cut(s) 520, 816, 919, 949, 976, 1109, 1234
HspAI GCGC 5 cut(s) 281, 444, 765, 1014, 1167
KroI GCCGGC 2 cut(s) 255, 1163
KroNI GCCGGC 2 cut(s) 257, 1165
KspAI GTTAAC 1 cut(s) 1009
Kzo9I GATC 5 cut(s) 236, 402, 551, 795, 1450
LmnI GCTCC 2 cut(s) 1127, 1388
Lsp1109I GCAGC 7 cut(s) 61, 115, 218, 532, 1260, 1384, 1462
LweI GCATC 2 cut(s) 693, 1108
MaeI CTAG 4 cut(s) 137, 708, 1017, 1328
MaeII ACGT 5 cut(s) 126, 411, 531, 691, 1116
MaeIII GTNAC 7 cut(s) 215, 426, 589, 808, 1078, 1207, 1364
MalI GATC 5 cut(s) 238, 404, 553, 797, 1452
MboI GATC 5 cut(s) 236, 402, 551, 795, 1450
MboII GAAGA 7 cut(s) 292, 493, 505, 571, 628, 793, 1421
MfeI CAATTG 1 cut(s) 1299
MflI RGATCY 4 cut(s) 236, 402, 551, 795
MhlI GDGCHC 2 cut(s) 183, 945
MluCI AATT 5 cut(s) 86, 756, 984, 1039, 1299
MlyI GAGTC 4 cut(s) 338, 978, 1293, 1420
MmeI TCCRAC 3 cut(s) 154, 505, 730
MroNI GCCGGC 2 cut(s) 255, 1163
MseI TTAA 4 cut(s) 624, 771, 1008, 1489
MslI CAYNNNNRTG 4 cut(s) 151, 671, 1076, 1104
MspA1I CMGCKG 3 cut(s) 106, 231, 272
MunI CAATTG 1 cut(s) 1299
Mva1269I GAATGC 1 cut(s) 1218
MvnI CGCG 3 cut(s) 17, 281, 444
NaeI GCCGGC 2 cut(s) 257, 1165
NcoI CCATGG 1 cut(s) 1230
NdeII GATC 5 cut(s) 236, 402, 551, 795, 1450
NgoMIV GCCGGC 2 cut(s) 255, 1163
NlaIII CATG 7 cut(s) 520, 816, 919, 949, 976, 1109, 1234
NlaIV GGNNCC 7 cut(s) 144, 181, 277, 436, 469, 797, 1390
NmeAIII GCCGAG 1 cut(s) 393
NmuCI GTSAC 2 cut(s) 1078, 1207
NspI RCATGY 2 cut(s) 816, 1109
PcsI WCGNNNNNNNCGW 3 cut(s) 294, 365, 726
PctI GAATGC 1 cut(s) 1218
PdiI GCCGGC 2 cut(s) 257, 1165
PfeI GAWTC 3 cut(s) 562, 840, 1346
PleI GAGTC 4 cut(s) 338, 977, 1292, 1420
PpsI GAGTC 4 cut(s) 338, 977, 1292, 1420
Ppu21I YACGTR 1 cut(s) 692
PspEI GGTNACC 1 cut(s) 1207
PspN4I GGNNCC 7 cut(s) 144, 181, 277, 436, 469, 797, 1390
PspOMI GGGCCC 1 cut(s) 179
PspPI GGNCC 7 cut(s) 156, 179, 180, 336, 434, 997, 1337
PstI CTGCAG 1 cut(s) 236
PsuI RGATCY 4 cut(s) 236, 402, 551, 795
PvuII CAGCTG 1 cut(s) 106
RsaI GTAC 7 cut(s) 506, 611, 663, 690, 881, 911, 1308
RsaNI GTAC 7 cut(s) 505, 610, 662, 689, 880, 910, 1307
RseI CAYNNNNRTG 4 cut(s) 151, 671, 1076, 1104
Rsr2I CGGWCCG 1 cut(s) 336
RsrII CGGWCCG 1 cut(s) 336
SaqAI TTAA 4 cut(s) 624, 771, 1008, 1489
Sau3AI GATC 5 cut(s) 236, 402, 551, 795, 1450
Sau96I GGNCC 7 cut(s) 156, 179, 180, 336, 434, 997, 1337
SchI GAGTC 4 cut(s) 338, 978, 1293, 1420
SduI GDGCHC 2 cut(s) 183, 945
SfaNI GCATC 2 cut(s) 693, 1108
SfcI CTRYAG 3 cut(s) 220, 232, 1401
SinI GGWCC 2 cut(s) 336, 1337
SmiMI CAYNNNNRTG 4 cut(s) 151, 671, 1076, 1104
Sse9I AATT 5 cut(s) 86, 756, 984, 1039, 1299
SspMI CTAG 4 cut(s) 137, 708, 1017, 1328
StyI CCWWGG 1 cut(s) 1230
TaaI ACNGT 5 cut(s) 504, 589, 614, 670, 1468
TaiI ACGT 5 cut(s) 129, 414, 534, 694, 1119
TaqI TCGA 4 cut(s) 41, 359, 852, 1102
TasI AATT 5 cut(s) 86, 756, 984, 1039, 1299
TatI WGTACW 2 cut(s) 504, 609
TauI GCSGC 6 cut(s) 17, 161, 255, 272, 281, 320
TfiI GAWTC 3 cut(s) 562, 840, 1346
Tru1I TTAA 4 cut(s) 624, 771, 1008, 1489
Tru9I TTAA 4 cut(s) 624, 771, 1008, 1489
TscAI CASTG 3 cut(s) 63, 507, 592
TseFI GTSAC 2 cut(s) 1078, 1207
TseI GCWGC 7 cut(s) 74, 103, 231, 545, 1248, 1397, 1475
Tsp45I GTSAC 2 cut(s) 1078, 1207
TspDTI ATGAA 3 cut(s) 253, 505, 628
TspGWI ACGGA 2 cut(s) 872, 897
TspRI CASTG 3 cut(s) 63, 507, 592
VpaK11BI GGWCC 2 cut(s) 336, 1337
XceI RCATGY 2 cut(s) 816, 1109
XmiI GTMKAC 1 cut(s) 990
XspI CTAG 4 cut(s) 137, 708, 1017, 1328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.