Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0032937.1

Orthogroup ID

OG0001365

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 708

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0032937.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 707 bp

ttcctcatcggctacgccgccgacctcggccatcttttcggtgactccctcgacaaacccaccaaaccacgcgccatcgccgtcttcgtggtcgggttctggatcctcgacgtggccaacaacatgttacagggcccctgccgtgctctcctggccgacatctccggctccgacaccaagaaaatgcgaaccgcgaatgggttctactctttcttcatggccatcggcaacgtcctggggttctccgccgggtcctacacccacctccacaagatgttccccttcaccatgtccaaagcctgcgacgtctactgcgccaatctcaaaacctgcttcttcctctccatcgctctcctcatagccctcaccattctcgctctcgtatccgtcacggaaccaacaccaactccggaaatggtagaagctgtggaggagattgaggaggaggaggaggagaaggcagcaccggtgcctttcttcagcgagatccttggtgctttcaaagagctacagagaccgatgtggatcttgttggtggtgacatgcctcaactgggtcgcgtggttccctttcctactgttcgacactgactggatgggaagggaggtgtacggaggggaggtcgaaaaaggcaggttgtatgccttgggggtcagagccggtgccctcggcctcatgctcaactctgtcgttttgggctgcgtctc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

236

Amino Acids

25.99

Weight (kDa)

4.91

Isoelectric Point (pI)

42.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22710 AT1G66570 AT1G66570 AT1G66570 AT2G14670 AT5G06170 AT5G43610
fragaria_vesca	FvH4_2g12320 FvH4_2g12320 FvH4_2g12320 FvH4_2g22550 FvH4_2g40110 FvH4_2g40120
malus_domestica	MD05G1040000.v1.1 MD10G1045900.v1.1 MD12G1059700.v1.1
prunus_persica	Prupe.8G052700_v2.0.a1
pyrus_communis	pycom05g03270 pycom10g03210
rosa_chinensis	RchiOBHm_Chr6g0272341 RchiOBHm_Chr6g0300591 RchiOBHm_Chr6g0300631
rosa_laevigata	RLG00000011315 RLG00000011321 RLG00000013682
rosa_multiflora	Rmu_sc0004226.1_g000016 Rmu_sc0004226.1_g000019 Rmu_sc0009379.1_g000001 Rmu_sc0009424.1_g000002 Rmu_sc0022725.1_g000003 Rmu_sc0032937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167570 Rroxscaffold_7G00167610 Rroxscaffold_7G00196420
rosa_rugosa	Rorug06G0068000 Rorug06G0068100 Rorug06G0297700 Rorug06G0297800 Rorug06G0297800
rosa_samantha	Rh6AG184300 Rh6AG410300 Rh6AG410600 Rh6BG187600 Rh6BG417400 Rh6CG185700 Rh6CG425000 Rh6CG425300 Rh6DG177500 Rh6DG410500
rosa_wichuraiana	Rw6G015890 Rw6G015930 Rw6G035880 Rw6G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	309
Acc36I	ACCTGC	2 cut(s)	338, 624
AccB1I	GGYRCC	2 cut(s)	469, 662
AccI	GTMKAC	1 cut(s)	309
AccII	CGCG	3 cut(s)	72, 194, 560
AccIII	TCCGGA	1 cut(s)	409
AciI	CCGC	3 cut(s)	18, 192, 246
AclWI	GGATC	4 cut(s)	97, 110, 481, 533
AcoI	YGGCCR	4 cut(s)	28, 114, 153, 219
AcuI	CTGAAG	1 cut(s)	463
AcyI	GRCGYC	1 cut(s)	306
AfaI	GTAC	1 cut(s)	611
AfiI	CCNNNNNNNGG	3 cut(s)	112, 198, 553
AflIII	ACRYGT	1 cut(s)	123
AgeI	ACCGGT	1 cut(s)	466
AgsI	TTSAA	1 cut(s)	502
AjiI	CACGTC	1 cut(s)	112
AjnI	CCWGG	2 cut(s)	150, 234
AluBI	AGCT	2 cut(s)	425, 508
AluI	AGCT	2 cut(s)	425, 508
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	4 cut(s)	97, 110, 481, 533
Aor13HI	TCCGGA	1 cut(s)	409
AoxI	GGCC	6 cut(s)	28, 114, 133, 153, 219, 670
ApaI	GGGCCC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	461, 699
AsiGI	ACCGGT	1 cut(s)	466
Asp700I	GAANNNNTTC	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	74, 317
AspS9I	GGNCC	3 cut(s)	133, 134, 252
AsuC2I	CCSGG	1 cut(s)	250
AsuHPI	GGTGA	4 cut(s)	53, 277, 358, 550
AvaII	GGWCC	1 cut(s)	252
BaeGI	GKGCMC	2 cut(s)	137, 667
BalI	TGGCCA	2 cut(s)	116, 221
BamHI	GGATCC	1 cut(s)	102
BanI	GGYRCC	2 cut(s)	469, 662
BanII	GRGCYC	1 cut(s)	137
BbsI	GAAGAC	1 cut(s)	76
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	473, 686
BccI	CCATC	5 cut(s)	39, 83, 230, 353, 589
BceAI	ACGGC	2 cut(s)	65, 126
BciT130I	CCWGG	2 cut(s)	152, 236
BciVI	GTATCC	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	250
BcoDI	GTCTC	1 cut(s)	508
BfmI	CTRYAG	1 cut(s)	509
BfuAI	ACCTGC	2 cut(s)	338, 624
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	3 cut(s)	18, 462, 700
BlsI	GCNGC	3 cut(s)	19, 463, 701
Bme1390I	CCNGG	3 cut(s)	152, 236, 250
Bme18I	GGWCC	1 cut(s)	252
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	3 cut(s)	133, 134, 252
BmiI	GGNNCC	9 cut(s)	104, 135, 136, 169, 253, 396, 471, 566, 664
BmrFI	CCNGG	3 cut(s)	152, 236, 250
BmrI	ACTGGG	1 cut(s)	562
BmuI	ACTGGG	1 cut(s)	562
BpiI	GAAGAC	1 cut(s)	76
BpuMI	CCSGG	1 cut(s)	250
BsaBI	GATNNNNATC	1 cut(s)	524
BsaHI	GRCGYC	1 cut(s)	306
BsaI	GGTCTC	1 cut(s)	508
BsaJI	CCNNGG	5 cut(s)	25, 235, 490, 645, 667
BsaWI	WCCGGW	2 cut(s)	409, 466
BsaXI	ACNNNNNCTCC	4 cut(s)	391, 421, 606, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	112, 198, 553
Bse118I	RCCGGY	2 cut(s)	466, 659
Bse1I	ACTGG	2 cut(s)	557, 596
Bse8I	GATNNNNATC	1 cut(s)	524
BseAI	TCCGGA	1 cut(s)	409
BseBI	CCWGG	2 cut(s)	152, 236
BseDI	CCNNGG	5 cut(s)	25, 235, 490, 645, 667
BseGI	GGATG	1 cut(s)	600
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	3 cut(s)	112, 198, 553
BseNI	ACTGG	2 cut(s)	557, 596
BseRI	GAGGAG	7 cut(s)	344, 446, 455, 458, 461, 464, 467
BseSI	GKGCMC	2 cut(s)	137, 667
BseXI	GCAGC	2 cut(s)	473, 686
Bsh1236I	CGCG	3 cut(s)	72, 194, 560
BshFI	GGCC	6 cut(s)	30, 116, 135, 155, 221, 672
BshNI	GGYRCC	2 cut(s)	469, 662
BshTI	ACCGGT	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	5 cut(s)	165, 249, 410, 467, 660
BslI	CCNNNNNNNGG	3 cut(s)	112, 198, 553
BsmAI	GTCTC	1 cut(s)	508
BsnI	GGCC	6 cut(s)	30, 116, 135, 155, 221, 672
Bso31I	GGTCTC	1 cut(s)	508
Bsp120I	GGGCCC	1 cut(s)	133
Bsp1286I	GDGCHC	3 cut(s)	137, 148, 667
Bsp13I	TCCGGA	1 cut(s)	409
Bsp143I	GATC	3 cut(s)	102, 486, 525
BspACI	CCGC	3 cut(s)	18, 192, 246
BspANI	GGCC	6 cut(s)	30, 116, 135, 155, 221, 672
BspEI	TCCGGA	1 cut(s)	409
BspFNI	CGCG	3 cut(s)	72, 194, 560
BspLI	GGNNCC	9 cut(s)	104, 135, 136, 169, 253, 396, 471, 566, 664
BspMI	ACCTGC	2 cut(s)	338, 624
BspPI	GGATC	4 cut(s)	97, 110, 481, 533
BspT107I	GGYRCC	2 cut(s)	469, 662
BspTNI	GGTCTC	1 cut(s)	508
BsrFI	RCCGGY	2 cut(s)	466, 659
BsrI	ACTGG	2 cut(s)	557, 596
BssAI	RCCGGY	2 cut(s)	466, 659
BssECI	CCNNGG	5 cut(s)	25, 235, 490, 645, 667
BssMI	GATC	3 cut(s)	102, 486, 525
BssNI	GRCGYC	1 cut(s)	306
BssT1I	CCWWGG	2 cut(s)	490, 645
Bst2UI	CCWGG	2 cut(s)	152, 236
Bst4CI	ACNGT	1 cut(s)	579
BstACI	GRCGYC	1 cut(s)	306
BstC8I	GCNNGC	1 cut(s)	301
BstF5I	GGATG	1 cut(s)	600
BstFNI	CGCG	3 cut(s)	72, 194, 560
BstHHI	GCGC	2 cut(s)	74, 317
BstKTI	GATC	3 cut(s)	105, 489, 528
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	3 cut(s)	102, 486, 525
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	2 cut(s)	152, 236
BstNSI	RCATGY	2 cut(s)	127, 546
BstSCI	CCNGG	3 cut(s)	150, 234, 248
BstSFI	CTRYAG	1 cut(s)	509
BstSLI	GKGCMC	2 cut(s)	137, 667
BstUI	CGCG	3 cut(s)	72, 194, 560
BstV1I	GCAGC	2 cut(s)	473, 686
BstV2I	GAAGAC	1 cut(s)	76
BstX2I	RGATCY	3 cut(s)	102, 486, 525
BstYI	RGATCY	3 cut(s)	102, 486, 525
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	6 cut(s)	30, 116, 135, 155, 221, 672
BtgZI	GCGATG	2 cut(s)	61, 331
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	600
BtsIMutI	CAGTG	1 cut(s)	585
BveI	ACCTGC	2 cut(s)	338, 624
Cac8I	GCNNGC	1 cut(s)	301
CfoI	GCGC	2 cut(s)	74, 317
Cfr10I	RCCGGY	2 cut(s)	466, 659
Cfr13I	GGNCC	3 cut(s)	133, 134, 252
CseI	GACGC	1 cut(s)	691
Csp6I	GTAC	1 cut(s)	610
CspAI	ACCGGT	1 cut(s)	466
CviAII	CATG	5 cut(s)	124, 217, 289, 543, 676
CviQI	GTAC	1 cut(s)	610
DpnI	GATC	3 cut(s)	104, 488, 527
DpnII	GATC	3 cut(s)	102, 486, 525
EaeI	YGGCCR	4 cut(s)	28, 114, 153, 219
EciI	GGCGGA	1 cut(s)	235
Eco130I	CCWWGG	2 cut(s)	490, 645
Eco24I	GRGCYC	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	463
EcoO109I	RGGNCCY	3 cut(s)	133, 134, 252
EcoRII	CCWGG	2 cut(s)	150, 234
EcoT14I	CCWWGG	2 cut(s)	490, 645
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	2 cut(s)	490, 645
FaeI	CATG	5 cut(s)	127, 220, 292, 546, 679
FaiI	YATR	7 cut(s)	125, 218, 290, 359, 544, 642, 677
FatI	CATG	5 cut(s)	123, 216, 288, 542, 675
FblI	GTMKAC	1 cut(s)	309
Fnu4HI	GCNGC	3 cut(s)	18, 462, 700
FokI	GGATG	1 cut(s)	607
FriOI	GRGCYC	1 cut(s)	137
Fsp4HI	GCNGC	3 cut(s)	18, 462, 700
GlaI	GCGC	2 cut(s)	73, 316
GluI	GCNGC	3 cut(s)	18, 462, 700
HaeIII	GGCC	6 cut(s)	30, 116, 135, 155, 221, 672
HapII	CCGG	5 cut(s)	165, 249, 410, 467, 660
HgaI	GACGC	1 cut(s)	691
HhaI	GCGC	2 cut(s)	74, 317
Hin1I	GRCGYC	1 cut(s)	306
Hin1II	CATG	5 cut(s)	127, 220, 292, 546, 679
Hin6I	GCGC	2 cut(s)	72, 315
HinP1I	GCGC	2 cut(s)	72, 315
HinfI	GANTC	1 cut(s)	44
HpaII	CCGG	5 cut(s)	165, 249, 410, 467, 660
HphI	GGTGA	4 cut(s)	53, 277, 358, 550
Hpy166II	GTNNAC	2 cut(s)	310, 610
Hpy188I	TCNGA	2 cut(s)	172, 656
Hpy188III	TCNNGA	2 cut(s)	100, 410
Hpy8I	GTNNAC	2 cut(s)	310, 610
Hpy99I	CGWCG	2 cut(s)	113, 308
HpyAV	CCTTC	3 cut(s)	292, 451, 594
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4IV	ACGT	3 cut(s)	111, 231, 306
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpySE526I	ACGT	3 cut(s)	111, 231, 306
Hsp92I	GRCGYC	1 cut(s)	306
Hsp92II	CATG	5 cut(s)	127, 220, 292, 546, 679
HspAI	GCGC	2 cut(s)	72, 315
Kpn2I	TCCGGA	1 cut(s)	409
Kzo9I	GATC	3 cut(s)	102, 486, 525
LmnI	GCTCC	1 cut(s)	173
Lsp1109I	GCAGC	2 cut(s)	473, 686
MaeII	ACGT	3 cut(s)	111, 231, 306
MaeIII	GTNAC	4 cut(s)	41, 126, 388, 538
MalI	GATC	3 cut(s)	104, 488, 527
MboI	GATC	3 cut(s)	102, 486, 525
MboII	GAAGA	4 cut(s)	76, 205, 328, 469
MflI	RGATCY	3 cut(s)	102, 486, 525
MhlI	GDGCHC	3 cut(s)	137, 148, 667
MlsI	TGGCCA	2 cut(s)	116, 221
MluNI	TGGCCA	2 cut(s)	116, 221
MlyI	GAGTC	1 cut(s)	38
MmeI	TCCRAC	1 cut(s)	195
Mox20I	TGGCCA	2 cut(s)	116, 221
MroI	TCCGGA	1 cut(s)	409
MroXI	GAANNNNTTC	1 cut(s)	200
MscI	TGGCCA	2 cut(s)	116, 221
Msp20I	TGGCCA	2 cut(s)	116, 221
MspI	CCGG	5 cut(s)	165, 249, 410, 467, 660
MspR9I	CCNGG	3 cut(s)	152, 236, 250
MvaI	CCWGG	2 cut(s)	152, 236
MvnI	CGCG	3 cut(s)	72, 194, 560
MwoI	GCNNNNNNNGC	1 cut(s)	152
NciI	CCSGG	1 cut(s)	250
NdeII	GATC	3 cut(s)	102, 486, 525
NlaIII	CATG	5 cut(s)	127, 220, 292, 546, 679
NlaIV	GGNNCC	9 cut(s)	104, 135, 136, 169, 253, 396, 471, 566, 664
NmeAIII	GCCGAG	2 cut(s)	6, 648
NmuCI	GTSAC	3 cut(s)	41, 388, 538
NspI	RCATGY	2 cut(s)	127, 546
PciI	ACATGT	1 cut(s)	123
PcsI	WCGNNNNNNNCGW	1 cut(s)	84
PdmI	GAANNNNTTC	1 cut(s)	200
PinAI	ACCGGT	1 cut(s)	466
PkrI	GCNGC	3 cut(s)	19, 463, 701
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PpuMI	RGGWCCY	1 cut(s)	252
PscI	ACATGT	1 cut(s)	123
Psp5II	RGGWCCY	1 cut(s)	252
Psp6I	CCWGG	2 cut(s)	150, 234
PspGI	CCWGG	2 cut(s)	150, 234
PspN4I	GGNNCC	9 cut(s)	104, 135, 136, 169, 253, 396, 471, 566, 664
PspOMI	GGGCCC	1 cut(s)	133
PspPI	GGNCC	3 cut(s)	133, 134, 252
PspPPI	RGGWCCY	1 cut(s)	252
PsuI	RGATCY	3 cut(s)	102, 486, 525
RsaI	GTAC	1 cut(s)	611
RsaNI	GTAC	1 cut(s)	610
SatI	GCNGC	3 cut(s)	18, 462, 700
Sau3AI	GATC	3 cut(s)	102, 486, 525
Sau96I	GGNCC	3 cut(s)	133, 134, 252
SchI	GAGTC	1 cut(s)	38
ScrFI	CCNGG	3 cut(s)	152, 236, 250
SduI	GDGCHC	3 cut(s)	137, 148, 667
SfcI	CTRYAG	1 cut(s)	509
SgrAI	CRCCGGYG	1 cut(s)	466
SinI	GGWCC	1 cut(s)	252
SsiI	CCGC	3 cut(s)	18, 192, 246
StyD4I	CCNGG	3 cut(s)	150, 234, 248
StyI	CCWWGG	2 cut(s)	490, 645
TaaI	ACNGT	1 cut(s)	579
TaiI	ACGT	3 cut(s)	114, 234, 309
TaqI	TCGA	4 cut(s)	51, 108, 582, 624
TaqII	GACCGA	1 cut(s)	532
TauI	GCSGC	1 cut(s)	20
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	3 cut(s)	41, 388, 538
TseI	GCWGC	2 cut(s)	461, 699
Tsp45I	GTSAC	3 cut(s)	41, 388, 538
TspDTI	ATGAA	1 cut(s)	205
TspGWI	ACGGA	3 cut(s)	376, 407, 627
TspRI	CASTG	1 cut(s)	592
VpaK11BI	GGWCC	1 cut(s)	252
XceI	RCATGY	2 cut(s)	127, 546
XmiI	GTMKAC	1 cut(s)	309
XmnI	GAANNNNTTC	1 cut(s)	200
ZraI	GACGTC	1 cut(s)	307

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.