Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0001365

Physical Location & Seq

Genomic Coordinates Forward (+)

6938234 .. 6938695

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1059700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCTGGTGTTGCTTTTGGTGACGTGTTTGAACTGGATTGCGTTGTTCCCGTTCTTATTGTTCAACCTTGACTGGATGGGAAATGAGGTGTACTCCGGCCAGTTCGGTAAAGGGAGACTGTACGATTTGGGGGTGAGGGCCGGTTCACTCGGCCTCTCGTTAAACTCTGTCCTTTTAAGGTTCATGTCTCTCGGGGTCGAGCATCTCGGCCGTTGGGTTGGTGGGGTCAAGAGATTGTGGGTTGTTGTCAACTTCTTGCTCGCCATCTGCATGGCCTTGACTGTTTTAATCACTAAATTGGCTGAGGCCAGCCGACACGGTCACATCGGAGTTGAGCTGCCTCTGCCACCTGCCGGTATCAAGGCCGATGCATTGTCTCTGTTCGCTGTGCTTGGCATTCCTCTAACGGTAAGTCTGCAAATCTTTTTGACATGTTTTATTAATTCTTACTTAATTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

154

Amino Acids

16.74

Weight (kDa)

8.96

Isoelectric Point (pI)

33.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22710 AT1G66570 AT1G66570 AT1G66570 AT2G14670 AT5G06170 AT5G43610
fragaria_vesca	FvH4_2g12320 FvH4_2g12320 FvH4_2g12320 FvH4_2g22550 FvH4_2g40110 FvH4_2g40120
malus_domestica	MD05G1040000.v1.1 MD10G1045900.v1.1 MD12G1059700.v1.1
prunus_persica	Prupe.8G052700_v2.0.a1
pyrus_communis	pycom05g03270 pycom10g03210
rosa_chinensis	RchiOBHm_Chr6g0272341 RchiOBHm_Chr6g0300591 RchiOBHm_Chr6g0300631
rosa_laevigata	RLG00000011315 RLG00000011321 RLG00000013682
rosa_multiflora	Rmu_sc0004226.1_g000016 Rmu_sc0004226.1_g000019 Rmu_sc0009379.1_g000001 Rmu_sc0009424.1_g000002 Rmu_sc0022725.1_g000003 Rmu_sc0032937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167570 Rroxscaffold_7G00167610 Rroxscaffold_7G00196420
rosa_rugosa	Rorug06G0068000 Rorug06G0068100 Rorug06G0297700 Rorug06G0297800 Rorug06G0297800
rosa_samantha	Rh6AG184300 Rh6AG410300 Rh6AG410600 Rh6BG187600 Rh6BG417400 Rh6CG185700 Rh6CG425000 Rh6CG425300 Rh6DG177500 Rh6DG410500
rosa_wichuraiana	Rw6G015890 Rw6G015930 Rw6G035880 Rw6G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AcoI	YGGCCR	2 cut(s)	97, 208
AfaI	GTAC	2 cut(s)	92, 122
AfiI	CCNNNNNNNGG	1 cut(s)	353
AflIII	ACRYGT	2 cut(s)	23, 431
AgsI	TTSAA	2 cut(s)	31, 64
AjiI	CACGTC	1 cut(s)	24
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	3 cut(s)	109, 192, 381
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	7 cut(s)	97, 138, 151, 208, 273, 306, 363
ApeKI	GCWGC	1 cut(s)	337
AseI	ATTAAT	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	138
AsuHPI	GGTGA	2 cut(s)	31, 145
AvaI	CYCGRG	1 cut(s)	191
BbvCI	CCTCAGC	1 cut(s)	303
BbvI	GCAGC	1 cut(s)	324
BccI	CCATC	2 cut(s)	70, 272
BceAI	ACGGC	1 cut(s)	195
BcoDI	GTCTC	3 cut(s)	109, 192, 381
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	338
BlsI	GCNGC	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	191
BmgBI	CACGTC	1 cut(s)	24
BmgT120I	GGNCC	1 cut(s)	138
BmsI	GCATC	2 cut(s)	211, 358
BplI	GAGNNNNNCTC	2 cut(s)	77, 109
Bpu10I	CCTNAGC	1 cut(s)	303
Bsc4I	CCNNNNNNNGG	1 cut(s)	353
Bse118I	RCCGGY	2 cut(s)	140, 353
Bse1I	ACTGG	3 cut(s)	38, 77, 100
BseGI	GGATG	1 cut(s)	81
BseLI	CCNNNNNNNGG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	3 cut(s)	38, 77, 100
BseX3I	CGGCCG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	324
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	7 cut(s)	99, 140, 153, 210, 275, 308, 365
BsiEI	CGRYCG	1 cut(s)	211
BsiHKCI	CYCGRG	1 cut(s)	191
BsiSI	CCGG	3 cut(s)	96, 141, 354
BslI	CCNNNNNNNGG	1 cut(s)	353
BsmAI	GTCTC	3 cut(s)	109, 192, 381
BsmI	GAATGC	1 cut(s)	396
BsnI	GGCC	7 cut(s)	99, 140, 153, 210, 275, 308, 365
BsoBI	CYCGRG	1 cut(s)	191
BspANI	GGCC	7 cut(s)	99, 140, 153, 210, 275, 308, 365
BspCNI	CTCAG	1 cut(s)	295
BspMI	ACCTGC	1 cut(s)	358
BsrFI	RCCGGY	2 cut(s)	140, 353
BsrI	ACTGG	3 cut(s)	38, 77, 100
BssAI	RCCGGY	2 cut(s)	140, 353
Bst4CI	ACNGT	4 cut(s)	120, 283, 320, 409
BstC8I	GCNNGC	2 cut(s)	261, 310
BstDEI	CTNAG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	81
BstMAI	GTCTC	3 cut(s)	109, 192, 381
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 343
BstNSI	RCATGY	1 cut(s)	435
BstV1I	GCAGC	1 cut(s)	324
BstXI	CCANNNNNNTGG	1 cut(s)	271
BstZI	CGGCCG	1 cut(s)	208
BsuRI	GGCC	7 cut(s)	99, 140, 153, 210, 275, 308, 365
BtrI	CACGTC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	81
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	2 cut(s)	261, 310
Cfr10I	RCCGGY	2 cut(s)	140, 353
Cfr13I	GGNCC	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	91, 121
CviAII	CATG	3 cut(s)	184, 271, 432
CviQI	GTAC	2 cut(s)	91, 121
DdeI	CTNAG	1 cut(s)	303
EaeI	YGGCCR	2 cut(s)	97, 208
EagI	CGGCCG	1 cut(s)	208
EclXI	CGGCCG	1 cut(s)	208
Eco52I	CGGCCG	1 cut(s)	208
Eco88I	CYCGRG	1 cut(s)	191
EcoT22I	ATGCAT	1 cut(s)	373
FaeI	CATG	3 cut(s)	187, 274, 435
FaiI	YATR	4 cut(s)	185, 272, 433, 460
FatI	CATG	3 cut(s)	183, 270, 431
Fnu4HI	GCNGC	1 cut(s)	338
FokI	GGATG	1 cut(s)	88
Fsp4HI	GCNGC	1 cut(s)	338
GluI	GCNGC	1 cut(s)	338
HaeIII	GGCC	7 cut(s)	99, 140, 153, 210, 275, 308, 365
HapII	CCGG	3 cut(s)	96, 141, 354
Hin1II	CATG	3 cut(s)	187, 274, 435
HincII	GTYRAC	1 cut(s)	250
HindII	GTYRAC	1 cut(s)	250
HpaII	CCGG	3 cut(s)	96, 141, 354
HphI	GGTGA	2 cut(s)	31, 145
Hpy166II	GTNNAC	3 cut(s)	91, 146, 250
Hpy188I	TCNGA	1 cut(s)	329
Hpy188III	TCNNGA	1 cut(s)	229
Hpy8I	GTNNAC	3 cut(s)	91, 146, 250
HpyCH4III	ACNGT	4 cut(s)	120, 283, 320, 409
HpyCH4IV	ACGT	1 cut(s)	23
HpyCH4V	TGCA	3 cut(s)	270, 371, 418
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 343
HpyF3I	CTNAG	1 cut(s)	303
HpySE526I	ACGT	1 cut(s)	23
Hsp92II	CATG	3 cut(s)	187, 274, 435
LpnPI	CCDG	8 cut(s)	19, 58, 109, 113, 154, 322, 363, 367
Lsp1109I	GCAGC	1 cut(s)	324
LweI	GCATC	2 cut(s)	211, 358
MaeII	ACGT	1 cut(s)	23
MaeIII	GTNAC	2 cut(s)	19, 320
MluCI	AATT	3 cut(s)	296, 442, 453
MnlI	CCTC	6 cut(s)	79, 129, 164, 298, 351, 411
Mph1103I	ATGCAT	1 cut(s)	373
MseI	TTAA	5 cut(s)	161, 176, 287, 441, 452
MslI	CAYNNNNRTG	1 cut(s)	269
MspI	CCGG	3 cut(s)	96, 141, 354
Mva1269I	GAATGC	1 cut(s)	396
MwoI	GCNNNNNNNGC	2 cut(s)	10, 343
NlaIII	CATG	3 cut(s)	187, 274, 435
NmeAIII	GCCGAG	2 cut(s)	129, 186
NmuCI	GTSAC	2 cut(s)	19, 320
NsiI	ATGCAT	1 cut(s)	373
NspI	RCATGY	1 cut(s)	435
PaqCI	CACCTGC	1 cut(s)	358
PciI	ACATGT	1 cut(s)	431
PctI	GAATGC	1 cut(s)	396
PflFI	GACNNNGTC	1 cut(s)	318
PkrI	GCNGC	1 cut(s)	339
PscI	ACATGT	1 cut(s)	431
PshBI	ATTAAT	1 cut(s)	441
PspPI	GGNCC	1 cut(s)	138
PsyI	GACNNNGTC	1 cut(s)	318
RsaI	GTAC	2 cut(s)	92, 122
RsaNI	GTAC	2 cut(s)	91, 121
RseI	CAYNNNNRTG	1 cut(s)	269
SaqAI	TTAA	5 cut(s)	161, 176, 287, 441, 452
SatI	GCNGC	1 cut(s)	338
Sau96I	GGNCC	1 cut(s)	138
SetI	ASST	6 cut(s)	26, 69, 90, 182, 339, 352
SfaNI	GCATC	2 cut(s)	211, 358
SmiMI	CAYNNNNRTG	1 cut(s)	269
Sse9I	AATT	3 cut(s)	296, 442, 453
TaaI	ACNGT	4 cut(s)	120, 283, 320, 409
TaiI	ACGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	198
TasI	AATT	3 cut(s)	296, 442, 453
TatI	WGTACW	1 cut(s)	90
Tru1I	TTAA	5 cut(s)	161, 176, 287, 441, 452
Tru9I	TTAA	5 cut(s)	161, 176, 287, 441, 452
TseFI	GTSAC	2 cut(s)	19, 320
TseI	GCWGC	1 cut(s)	337
Tsp45I	GTSAC	2 cut(s)	19, 320
TspDTI	ATGAA	2 cut(s)	172, 447
Tth111I	GACNNNGTC	1 cut(s)	318
VspI	ATTAAT	1 cut(s)	441
XceI	RCATGY	1 cut(s)	435
Zsp2I	ATGCAT	1 cut(s)	373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.