Rw6G035920

Sucrose transport

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Forward (+)
60515290 .. 60517276
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G035920.1

Sequence Viewer

Length: 1407 bp
ATGACCGTTGATACCATGAACTCGCCGACCTCGCCGAACTCGCCGGAGGCGTCAAGCCCGATGAGTAGGATAGTTCTGGTGGCCTCTATTGGTGCCGGGGTGCAATTCGGTTGGGCGTTGCAGCTGTCCTTGCTAACACCCTACGTGCAGCAACTGGGGGTGCCCCACAAATGGGCCTCCTTCGTCTGGCTGTGCGGGCCCCTCTCCGGTTTACTGGTGCAACCCATCGTGGGTTACTATAGCGACCGCTGCACTTCTCGTTTTGGTCGCCGCCGACCGTTCATAGCCGGCGGGGACATCGGCGTCCGCTCCGGCGATTCCTTGGGCAAACATACGAAGCCACGAGCCGTGGTTGTGTTTGTGATCGGGTTTTGGATATTGGACGTGGCCAACAACATGTTACAAGGCCCCTGTCGCGCTCTTTTGGCCGACATCTCCGGTTCCGACACGAAGAAGATGAGAACAGCCAATGCCATGTACTCATTCTTCATGGCTGTCGGAAATGTGCTTGGCTACGCCGCCGGATCGTTGAAGAATCTGCACAAGGTGTTCCCTTTCACCACAACCAAAGCCTGTGATGTTTACTGCGCGAATCTTAAAAGCTGTTTTTTCATATCCATTGCTCTACTTCTGATACTCACCGTGTTGGTTATGGTATCCATACGTGAGAAAACAATTCCTAGTAACGATAAAGGTGAGGGAGGAGTGATGTTCTTCGGACAAATTATGGTTGCTTTTAAAGAGTTGAAGAAGCCGATGTGGATCTTGCTTTTGGTGACTTGCTTGAACTGGATTGCATGGTTCGGCTTCTTATTATTCGATACAGATTGGATGGGGAAAGAGGTCTACGGTGGTACGATCGGGAAAGGGAGTCTTTACGACATGGGAGTTAGGGCTGGTTCACTTGGGCTCATGCTAAACTCTATCGTGTTGGGGGTTATGTCTCTTGGGATTATCTACTTGGCTCGTGGGATTAATGGAGCTAAACAACTCTGGGGAGTGATCAATTTTGTACTAGCCATTTGCCTCCTAATGACAATATTGGTCACTAAGTTGGCTGAGAAGCATCGACATGCCTGTGTCGTCGTTGGCGGAGCTGAGCCGCCGCCGCCCCCCTGCTGGTATCAAGGCCGCATTCCCTTTGCTATGGCCTCCATATTTTGCAGCAACTCTGGTGGAGGACAAGGGCTTTCTTTGGGAGTCTTGAATATATCAATTGTCATACCACAGATGCTTGTATCTTTAGTAAGCGGACCATTAGATTCTGCTTTCGGAGGTGGAAACTTACCGGCGTTTGTGTTGGGAGCCATTGCTGCTGTAATAAGTGGAATATTGGCAATGACTGTTCTACCATCTCCTCCAGCTGTTCGTGAAACTAATACTATTGTAGCTGCTGGCTTCCGTTAA

Protein Analysis

468

Amino Acids

49.98

Weight (kDa)

9.42

Isoelectric Point (pI)

36.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_2 PF13347 37 - 267 5.2e-11 MFS/sugar transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 302
AccB1I GGYRCC 2 cut(s) 92, 160
AccBSI CCGCTC 1 cut(s) 309
AccI GTMKAC 1 cut(s) 846
AccII CGCG 2 cut(s) 417, 590
AclWI GGATC 2 cut(s) 532, 770
AcoI YGGCCR 2 cut(s) 387, 426
AcyI GRCGYC 2 cut(s) 50, 303
AdeI CACNNNGTG 1 cut(s) 547
AfaI GTAC 3 cut(s) 479, 856, 1014
AfiI CCNNNNNNNGG 6 cut(s) 171, 172, 186, 206, 230, 1119
AflIII ACRYGT 1 cut(s) 396
AgsI TTSAA 4 cut(s) 532, 748, 787, 1207
AjiI CACGTC 1 cut(s) 385
AluBI AGCT 6 cut(s) 124, 603, 983, 1097, 1364, 1391
AluI AGCT 6 cut(s) 124, 603, 983, 1097, 1364, 1391
Alw26I GTCTC 1 cut(s) 948
AlwI GGATC 2 cut(s) 532, 770
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 8 cut(s) 81, 174, 197, 387, 406, 426, 1129, 1149
ApaI GGGCCC 1 cut(s) 201
ApeKI GCWGC 6 cut(s) 121, 148, 249, 1164, 1313, 1391
AseI ATTAAT 1 cut(s) 975
AspLEI GCGC 2 cut(s) 419, 590
AspS9I GGNCC 5 cut(s) 174, 197, 198, 407, 1253
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 4 cut(s) 550, 631, 707, 787
AvaII GGWCC 1 cut(s) 1253
BaeGI GKGCMC 2 cut(s) 165, 201
BalI TGGCCA 1 cut(s) 389
BanI GGYRCC 2 cut(s) 92, 160
BanII GRGCYC 2 cut(s) 201, 912
BarI GAAGNNNNNNTAC 2 cut(s) 470, 502
BauI CACGAG 2 cut(s) 342, 966
BbvI GCAGC 6 cut(s) 133, 160, 236, 1176, 1300, 1378
BccI CCATC 3 cut(s) 233, 826, 1360
BceAI ACGGC 1 cut(s) 332
BciVI GTATCC 1 cut(s) 667
BclI TGATCA 1 cut(s) 1002
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 948
BfaI CTAG 2 cut(s) 681, 1016
BfmI CTRYAG 1 cut(s) 238
BfuI GTATCC 1 cut(s) 667
BlpI GCTNAGC 1 cut(s) 1098
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 1253
BmgBI CACGTC 1 cut(s) 385
BmgT120I GGNCC 5 cut(s) 174, 197, 198, 407, 1253
BmiI GGNNCC 7 cut(s) 94, 162, 199, 200, 409, 442, 1306
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 1075, 1221
BmuI ACTGGG 1 cut(s) 164
BpmI CTGGAG 1 cut(s) 1344
Bpu1102I GCTNAGC 1 cut(s) 1098
BpuMI CCSGG 1 cut(s) 97
BsaAI YACGTR 2 cut(s) 145, 665
BsaBI GATNNNNATC 1 cut(s) 761
BsaHI GRCGYC 2 cut(s) 50, 303
BsaJI CCNNGG 3 cut(s) 96, 321, 348
BsaWI WCCGGW 2 cut(s) 206, 437
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 172, 186, 206, 230, 1119
Bse118I RCCGGY 2 cut(s) 287, 1288
Bse1I ACTGG 3 cut(s) 159, 219, 794
Bse3DI GCAATG 3 cut(s) 618, 1308, 1344
Bse8I GATNNNNATC 1 cut(s) 761
BseDI CCNNGG 3 cut(s) 96, 321, 348
BseGI GGATG 1 cut(s) 837
BseJI GATNNNNATC 1 cut(s) 761
BseLI CCNNNNNNNGG 6 cut(s) 171, 172, 186, 206, 230, 1119
BseMI GCAATG 3 cut(s) 618, 1308, 1344
BseMII CTCAG 2 cut(s) 1050, 1089
BseNI ACTGG 3 cut(s) 159, 219, 794
BseRI GAGGAG 2 cut(s) 717, 1347
BseSI GKGCMC 2 cut(s) 165, 201
BseXI GCAGC 6 cut(s) 133, 160, 236, 1176, 1300, 1378
BsgI GTGCAG 3 cut(s) 167, 235, 524
Bsh1236I CGCG 2 cut(s) 417, 590
Bsh1285I CGRYCG 3 cut(s) 247, 278, 861
BshFI GGCC 8 cut(s) 83, 176, 199, 389, 408, 428, 1131, 1151
BshNI GGYRCC 2 cut(s) 92, 160
BsiEI CGRYCG 3 cut(s) 247, 278, 861
BsiSI CCGG 8 cut(s) 44, 96, 207, 288, 312, 438, 522, 1289
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 6 cut(s) 171, 172, 186, 206, 230, 1119
BsmAI GTCTC 1 cut(s) 948
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 1134
BsnI GGCC 8 cut(s) 83, 176, 199, 389, 408, 428, 1131, 1151
Bsp120I GGGCCC 1 cut(s) 197
Bsp1286I GDGCHC 3 cut(s) 165, 201, 912
Bsp143I GATC 5 cut(s) 363, 524, 762, 858, 1002
Bsp1720I GCTNAGC 1 cut(s) 1098
BspANI GGCC 8 cut(s) 83, 176, 199, 389, 408, 428, 1131, 1151
BspCNI CTCAG 2 cut(s) 1051, 1090
BspFNI CGCG 2 cut(s) 417, 590
BspLI GGNNCC 7 cut(s) 94, 162, 199, 200, 409, 442, 1306
BspPI GGATC 2 cut(s) 532, 770
BspT107I GGYRCC 2 cut(s) 92, 160
BsrBI CCGCTC 1 cut(s) 309
BsrDI GCAATG 3 cut(s) 618, 1308, 1344
BsrFI RCCGGY 2 cut(s) 287, 1288
BsrI ACTGG 3 cut(s) 159, 219, 794
BssAI RCCGGY 2 cut(s) 287, 1288
BssECI CCNNGG 3 cut(s) 96, 321, 348
BssMI GATC 5 cut(s) 363, 524, 762, 858, 1002
BssNI GRCGYC 2 cut(s) 50, 303
BssSI CACGAG 2 cut(s) 342, 966
BssT1I CCWWGG 1 cut(s) 321
Bst2BI CACGAG 2 cut(s) 342, 966
Bst4CI ACNGT 5 cut(s) 7, 279, 643, 851, 1345
BstACI GRCGYC 2 cut(s) 50, 303
BstBAI YACGTR 2 cut(s) 145, 665
BstC8I GCNNGC 3 cut(s) 197, 289, 1396
BstDEI CTNAG 3 cut(s) 1050, 1059, 1098
BstDSI CCRYGG 1 cut(s) 348
BstF5I GGATG 1 cut(s) 837
BstFNI CGCG 2 cut(s) 417, 590
BstHHI GCGC 2 cut(s) 419, 590
BstKTI GATC 5 cut(s) 366, 527, 765, 861, 1005
BstMAI GTCTC 1 cut(s) 948
BstMBI GATC 5 cut(s) 363, 524, 762, 858, 1002
BstMCI CGRYCG 3 cut(s) 247, 278, 861
BstMWI GCNNNNNNNGC 9 cut(s) 31, 40, 130, 196, 249, 414, 425, 1108, 1313
BstNSI RCATGY 2 cut(s) 400, 1076
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 238
BstSLI GKGCMC 2 cut(s) 165, 201
BstUI CGCG 2 cut(s) 417, 590
BstV1I GCAGC 6 cut(s) 133, 160, 236, 1176, 1300, 1378
BstX2I RGATCY 1 cut(s) 762
BstYI RGATCY 1 cut(s) 762
BsuI GTATCC 1 cut(s) 667
BsuRI GGCC 8 cut(s) 83, 176, 199, 389, 408, 428, 1131, 1151
BtgI CCRYGG 1 cut(s) 348
BtrI CACGTC 1 cut(s) 385
BtsCI GGATG 1 cut(s) 837
Cac8I GCNNGC 3 cut(s) 197, 289, 1396
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 2 cut(s) 419, 590
Cfr10I RCCGGY 2 cut(s) 287, 1288
Cfr13I GGNCC 5 cut(s) 174, 197, 198, 407, 1253
CseI GACGC 2 cut(s) 39, 292
Csp6I GTAC 3 cut(s) 478, 855, 1013
CspCI CAANNNNNGTGG 2 cut(s) 1156, 1191
CviAII CATG 8 cut(s) 16, 397, 475, 490, 798, 883, 913, 1073
CviQI GTAC 3 cut(s) 478, 855, 1013
DdeI CTNAG 3 cut(s) 1050, 1059, 1098
DpnI GATC 5 cut(s) 365, 526, 764, 860, 1004
DpnII GATC 5 cut(s) 363, 524, 762, 858, 1002
DraI TTTAAA 1 cut(s) 739
DraIII CACNNNGTG 1 cut(s) 547
DrdI GACNNNNNNGTC 1 cut(s) 302
DseDI GACNNNNNNGTC 1 cut(s) 302
EaeI YGGCCR 2 cut(s) 387, 426
EciI GGCGGA 1 cut(s) 1107
Eco130I CCWWGG 1 cut(s) 321
Eco24I GRGCYC 2 cut(s) 201, 912
Eco47I GGWCC 1 cut(s) 1253
EcoO109I RGGNCCY 2 cut(s) 198, 407
EcoT14I CCWWGG 1 cut(s) 321
EcoT38I GRGCYC 2 cut(s) 201, 912
ErhI CCWWGG 1 cut(s) 321
FaeI CATG 8 cut(s) 19, 400, 478, 493, 801, 886, 916, 1076
FalI AAGNNNNNCTT 2 cut(s) 858, 890
FaqI GGGAC 1 cut(s) 308
FatI CATG 8 cut(s) 15, 396, 474, 489, 797, 882, 912, 1072
FauI CCCGC 2 cut(s) 188, 284
FbaI TGATCA 1 cut(s) 1002
FblI GTMKAC 1 cut(s) 846
FokI GGATG 1 cut(s) 844
FriOI GRGCYC 2 cut(s) 201, 912
FspBI CTAG 2 cut(s) 681, 1016
GlaI GCGC 2 cut(s) 418, 589
GsuI CTGGAG 1 cut(s) 1344
HaeIII GGCC 8 cut(s) 83, 176, 199, 389, 408, 428, 1131, 1151
HapII CCGG 8 cut(s) 44, 96, 207, 288, 312, 438, 522, 1289
HgaI GACGC 2 cut(s) 39, 292
HhaI GCGC 2 cut(s) 419, 590
Hin1I GRCGYC 2 cut(s) 50, 303
Hin1II CATG 8 cut(s) 19, 400, 478, 493, 801, 886, 916, 1076
Hin6I GCGC 2 cut(s) 417, 588
HinP1I GCGC 2 cut(s) 417, 588
HinfI GANTC 6 cut(s) 317, 535, 592, 871, 1200, 1262
HpaII CCGG 8 cut(s) 44, 96, 207, 288, 312, 438, 522, 1289
HphI GGTGA 4 cut(s) 550, 631, 707, 787
Hpy166II GTNNAC 4 cut(s) 212, 583, 847, 902
Hpy188I TCNGA 5 cut(s) 445, 500, 633, 719, 1274
Hpy188III TCNNGA 3 cut(s) 862, 1204, 1370
Hpy8I GTNNAC 4 cut(s) 212, 583, 847, 902
Hpy99I CGWCG 1 cut(s) 1088
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 5 cut(s) 7, 279, 643, 851, 1345
HpyCH4IV ACGT 3 cut(s) 144, 384, 664
HpyCH4V TGCA 8 cut(s) 103, 121, 148, 220, 252, 541, 797, 1164
HpyF10VI GCNNNNNNNGC 9 cut(s) 31, 40, 130, 196, 249, 414, 425, 1108, 1313
HpyF3I CTNAG 3 cut(s) 1050, 1059, 1098
HpySE526I ACGT 3 cut(s) 144, 384, 664
Hsp92I GRCGYC 2 cut(s) 50, 303
Hsp92II CATG 8 cut(s) 19, 400, 478, 493, 801, 886, 916, 1076
HspAI GCGC 2 cut(s) 417, 588
KroI GCCGGC 1 cut(s) 287
KroNI GCCGGC 1 cut(s) 289
Ksp22I TGATCA 1 cut(s) 1002
Kzo9I GATC 5 cut(s) 363, 524, 762, 858, 1002
LmnI GCTCC 4 cut(s) 314, 980, 1094, 1304
Lsp1109I GCAGC 6 cut(s) 133, 160, 236, 1176, 1300, 1378
LweI GCATC 2 cut(s) 1075, 1221
MaeI CTAG 2 cut(s) 681, 1016
MaeII ACGT 3 cut(s) 144, 384, 664
MaeIII GTNAC 5 cut(s) 233, 399, 683, 775, 1045
MalI GATC 5 cut(s) 365, 526, 764, 860, 1004
MbiI CCGCTC 1 cut(s) 309
MboI GATC 5 cut(s) 363, 524, 762, 858, 1002
MboII GAAGA 6 cut(s) 463, 466, 478, 544, 706, 760
MfeI CAATTG 1 cut(s) 1215
MflI RGATCY 1 cut(s) 762
MhlI GDGCHC 3 cut(s) 165, 201, 912
MlsI TGGCCA 1 cut(s) 389
MluCI AATT 5 cut(s) 104, 675, 723, 1006, 1215
MluNI TGGCCA 1 cut(s) 389
MlyI GAGTC 2 cut(s) 880, 1209
MmeI TCCRAC 2 cut(s) 468, 478
Mox20I TGGCCA 1 cut(s) 389
MroNI GCCGGC 1 cut(s) 287
MscI TGGCCA 1 cut(s) 389
MseI TTAA 4 cut(s) 597, 738, 975, 1405
MslI CAYNNNNRTG 2 cut(s) 1071, 1077
Msp20I TGGCCA 1 cut(s) 389
MspA1I CMGCKG 3 cut(s) 124, 249, 1364
MspI CCGG 8 cut(s) 44, 96, 207, 288, 312, 438, 522, 1289
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 1215
Mva1269I GAATGC 1 cut(s) 1134
MvnI CGCG 2 cut(s) 417, 590
MwoI GCNNNNNNNGC 9 cut(s) 31, 40, 130, 196, 249, 414, 425, 1108, 1313
NaeI GCCGGC 1 cut(s) 289
NciI CCSGG 1 cut(s) 97
NdeII GATC 5 cut(s) 363, 524, 762, 858, 1002
NgoMIV GCCGGC 1 cut(s) 287
NlaIII CATG 8 cut(s) 19, 400, 478, 493, 801, 886, 916, 1076
NlaIV GGNNCC 7 cut(s) 94, 162, 199, 200, 409, 442, 1306
NmuCI GTSAC 2 cut(s) 775, 1045
NspI RCATGY 2 cut(s) 400, 1076
PciI ACATGT 1 cut(s) 396
PcsI WCGNNNNNNNCGW 1 cut(s) 47
PctI GAATGC 1 cut(s) 1134
PdiI GCCGGC 1 cut(s) 289
PfeI GAWTC 4 cut(s) 317, 535, 592, 1262
Ple19I CGATCG 1 cut(s) 861
PleI GAGTC 2 cut(s) 879, 1208
PpsI GAGTC 2 cut(s) 879, 1208
Ppu21I YACGTR 2 cut(s) 145, 665
PscI ACATGT 1 cut(s) 396
PshBI ATTAAT 1 cut(s) 975
PspN4I GGNNCC 7 cut(s) 94, 162, 199, 200, 409, 442, 1306
PspOMI GGGCCC 1 cut(s) 197
PspPI GGNCC 5 cut(s) 174, 197, 198, 407, 1253
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 762
PvuI CGATCG 1 cut(s) 861
PvuII CAGCTG 2 cut(s) 124, 1364
RsaI GTAC 3 cut(s) 479, 856, 1014
RsaNI GTAC 3 cut(s) 478, 855, 1013
RseI CAYNNNNRTG 2 cut(s) 1071, 1077
SaqAI TTAA 4 cut(s) 597, 738, 975, 1405
Sau3AI GATC 5 cut(s) 363, 524, 762, 858, 1002
Sau96I GGNCC 5 cut(s) 174, 197, 198, 407, 1253
SchI GAGTC 2 cut(s) 880, 1209
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 3 cut(s) 165, 201, 912
SfaNI GCATC 2 cut(s) 1075, 1221
SfcI CTRYAG 1 cut(s) 238
SinI GGWCC 1 cut(s) 1253
SmiMI CAYNNNNRTG 2 cut(s) 1071, 1077
Sse9I AATT 5 cut(s) 104, 675, 723, 1006, 1215
SspI AATATT 2 cut(s) 1041, 1332
SspMI CTAG 2 cut(s) 681, 1016
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 321
TaaI ACNGT 5 cut(s) 7, 279, 643, 851, 1345
TaiI ACGT 3 cut(s) 147, 387, 667
TaqI TCGA 2 cut(s) 819, 1069
TasI AATT 5 cut(s) 104, 675, 723, 1006, 1215
TatI WGTACW 2 cut(s) 477, 1012
TauI GCSGC 6 cut(s) 273, 521, 1105, 1108, 1111, 1134
TfiI GAWTC 4 cut(s) 317, 535, 592, 1262
Tru1I TTAA 4 cut(s) 597, 738, 975, 1405
Tru9I TTAA 4 cut(s) 597, 738, 975, 1405
TseFI GTSAC 2 cut(s) 775, 1045
TseI GCWGC 6 cut(s) 121, 148, 249, 1164, 1313, 1391
Tsp45I GTSAC 2 cut(s) 775, 1045
TspDTI ATGAA 4 cut(s) 32, 271, 478, 601
TspGWI ACGGA 1 cut(s) 1391
VpaK11BI GGWCC 1 cut(s) 1253
VspI ATTAAT 1 cut(s) 975
XceI RCATGY 2 cut(s) 400, 1076
XmiI GTMKAC 1 cut(s) 846
XspI CTAG 2 cut(s) 681, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.