RchiOBHm_Chr6g0300631

Sucrose transport

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
61415889 .. 61417875
1987 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ26999

Sequence Viewer

Length: 1503 bp
ATGACCGTTGATACCATGAACTCGCCGACCTCGCCGAACTCGCCGGAGGCGTCAAGCCCGATGAGTAAGATAGTTCTGGTGGCCTCTATTGGTGCCGGGGTGCAATTCGGTTGGGCGTTGCAGCTGTCCTTGCTAACACCCTACGTGCAGCAACTGGGGGTGCCCCACAAATGGGCCTCCTTCGTCTGGCTGTGCGGGCCCCTCTCCGGTTTACTGGTGCAACCCATCGTGGGTTACTATAGCGACCGTTGCACTTCTCGTTTTGGTCGCCGCCGACCGTTCATAGCCGCGGGTGCTGCCCTTGTCGCCATCTCCGTCTTCCTCATTGGATACTCCAAGGACATCGGCGTCCGCTCCGGCGATTCCTTGGACAAACATACGAAGCCACGAGCCGTGGTTGTGTTTGTGATCGGGTTTTGGATATTGGACGTGGCCAACAACATGTTACAAGGCCCCTGTCGCGCTCTTTTGGCCGACATCTCCGGTTCCGACACGAAGAAGATGAGGACAGCCAATGCCATGTACTCATTCTTCATGGCTGTCGGAAATGTGCTTGGCTACGCCGCCGGATCGTTGAAGAATCTGCACAAGGTGTTCCCTTTCACCACAACCAAAGCCTGTGATGTTTACTGCGCGAATCTTAAAAGCTGTTTTTTCATATCCATTGCTCTACTTCTGATACTCACCGTGTTGGTTATGGTATCCATAAGTGAGAAAACAATTCCGAGTAACGATAAAGGTGAGGGAGGAGTGATGTTTTTCGGACAAATTATGGTTGCTTTTAAAGAGTTGAAGAAGCCGATGTGGATCTTGCTTTTGGTGACTTGCTTGAACTGGATTGCATGGTTCGGCTTCTTACTATTCGACACAGATTGGATGGGGAAAGAGGTCTACGGTGGGACGATCGGGAAAGGGAGTCTTTACGACATGGGAGTTAGGGCTGGTTCACTTGGGCTCATGCTAAACTCTATCGTGTTGGGGGTTATGTCTCTTGGGATTATCTACTTGGCTCGTGGGGTTAATGGAGCTAAACAACTCTGGGGAGTGATCAATTTTGTACTAGCCATTTGCCTCCTAATGACAATATTGGTCACTAAGTTGGCTGAGAAGCATCGACATGCCTGTGTCGTCGTTGGCGGAGCTGAGCCGCCGCCGCCCCCTGCTGGTATCAAGGCCGGTGCATTGCTTATATTTGCGGTGTTGGGGACACCTCTAGCGGTGACCTACAGCATTCCCTTTGCTATGGCCTCCATATTTTGCAGCAACTCTGGTGGAGGACAAGGGCTTTCTTTGGGAGTCTTGAATATATCCATTGTCATACCACAGATGCTTGTATCTTTAGCAAGCGGACCATTAGATTCTGCTTTCGGAGGTGGAAACTTACCGGTATTTGTGTTGGGAGCCATTGCTGCTGTAATAAGTGGAATATTGGCAATGACTGTTCTACCATCTCCTCCAGCTGTTCGTGAAACTAATACTGTTGTAGCTGTTGGCTTCCATTAA

Protein Analysis

500

Amino Acids

52.91

Weight (kDa)

9.29

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_2 PF13347 37 - 282 1.4e-13 MFS/sugar transport protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 347
AccB1I GGYRCC 2 cut(s) 92, 160
AccBSI CCGCTC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 891
AccII CGCG 3 cut(s) 290, 462, 635
AclWI GGATC 2 cut(s) 577, 815
AcoI YGGCCR 2 cut(s) 432, 471
AcyI GRCGYC 2 cut(s) 50, 348
AdeI CACNNNGTG 1 cut(s) 592
AfaI GTAC 2 cut(s) 524, 1059
AfiI CCNNNNNNNGG 6 cut(s) 171, 172, 186, 206, 230, 1163
AflIII ACRYGT 1 cut(s) 441
AgeI ACCGGT 1 cut(s) 1384
AgsI TTSAA 4 cut(s) 577, 793, 832, 1303
AjiI CACGTC 1 cut(s) 430
AluBI AGCT 6 cut(s) 124, 648, 1028, 1142, 1460, 1487
AluI AGCT 6 cut(s) 124, 648, 1028, 1142, 1460, 1487
Alw26I GTCTC 1 cut(s) 993
AlwI GGATC 2 cut(s) 577, 815
AlwNI CAGNNNCTG 1 cut(s) 154
AoxI GGCC 8 cut(s) 81, 174, 197, 432, 451, 471, 1173, 1245
ApaI GGGCCC 1 cut(s) 201
ApeKI GCWGC 5 cut(s) 121, 148, 296, 1260, 1409
AsiGI ACCGGT 1 cut(s) 1384
AspLEI GCGC 2 cut(s) 464, 635
AspS9I GGNCC 5 cut(s) 174, 197, 198, 452, 1349
AsuC2I CCSGG 1 cut(s) 97
AsuHPI GGTGA 5 cut(s) 595, 676, 752, 832, 1231
AvaII GGWCC 1 cut(s) 1349
BaeGI GKGCMC 2 cut(s) 165, 201
BalI TGGCCA 1 cut(s) 434
BanI GGYRCC 2 cut(s) 92, 160
BanII GRGCYC 2 cut(s) 201, 957
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
BauI CACGAG 2 cut(s) 387, 1011
BbsI GAAGAC 1 cut(s) 310
BbvI GCAGC 5 cut(s) 133, 160, 283, 1272, 1396
BccI CCATC 4 cut(s) 233, 317, 871, 1456
BceAI ACGGC 1 cut(s) 377
BciVI GTATCC 2 cut(s) 323, 712
BclI TGATCA 1 cut(s) 1047
BcnI CCSGG 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 993
BfaI CTAG 2 cut(s) 1061, 1214
BfmI CTRYAG 2 cut(s) 238, 1225
BfuI GTATCC 2 cut(s) 323, 712
BlpI GCTNAGC 1 cut(s) 1143
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 1 cut(s) 1349
BmgBI CACGTC 1 cut(s) 430
BmgT120I GGNCC 5 cut(s) 174, 197, 198, 452, 1349
BmiI GGNNCC 7 cut(s) 94, 162, 199, 200, 454, 487, 1402
BmrFI CCNGG 1 cut(s) 97
BmrI ACTGGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 1120, 1317
BmuI ACTGGG 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 310
BpmI CTGGAG 1 cut(s) 1440
Bpu1102I GCTNAGC 1 cut(s) 1143
BpuMI CCSGG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 145
BsaBI GATNNNNATC 1 cut(s) 806
BsaHI GRCGYC 2 cut(s) 50, 348
BsaJI CCNNGG 5 cut(s) 96, 288, 336, 366, 393
BsaWI WCCGGW 3 cut(s) 206, 482, 1384
Bsc4I CCNNNNNNNGG 6 cut(s) 171, 172, 186, 206, 230, 1163
Bse118I RCCGGY 2 cut(s) 1175, 1384
Bse1I ACTGG 3 cut(s) 159, 219, 839
Bse3DI GCAATG 4 cut(s) 663, 1181, 1404, 1440
Bse8I GATNNNNATC 1 cut(s) 806
BseDI CCNNGG 5 cut(s) 96, 288, 336, 366, 393
BseGI GGATG 1 cut(s) 882
BseJI GATNNNNATC 1 cut(s) 806
BseLI CCNNNNNNNGG 6 cut(s) 171, 172, 186, 206, 230, 1163
BseMI GCAATG 4 cut(s) 663, 1181, 1404, 1440
BseMII CTCAG 2 cut(s) 1095, 1134
BseNI ACTGG 3 cut(s) 159, 219, 839
BseRI GAGGAG 2 cut(s) 762, 1443
BseSI GKGCMC 2 cut(s) 165, 201
BseXI GCAGC 5 cut(s) 133, 160, 283, 1272, 1396
BsgI GTGCAG 2 cut(s) 167, 569
Bsh1236I CGCG 3 cut(s) 290, 462, 635
Bsh1285I CGRYCG 3 cut(s) 247, 278, 906
BshFI GGCC 8 cut(s) 83, 176, 199, 434, 453, 473, 1175, 1247
BshNI GGYRCC 2 cut(s) 92, 160
BshTI ACCGGT 1 cut(s) 1384
BsiEI CGRYCG 3 cut(s) 247, 278, 906
BsiSI CCGG 8 cut(s) 44, 96, 207, 357, 483, 567, 1176, 1385
BslFI GGGAC 2 cut(s) 913, 1219
BslI CCNNNNNNNGG 6 cut(s) 171, 172, 186, 206, 230, 1163
BsmAI GTCTC 1 cut(s) 993
BsmFI GGGAC 2 cut(s) 913, 1219
BsmI GAATGC 1 cut(s) 1230
BsnI GGCC 8 cut(s) 83, 176, 199, 434, 453, 473, 1175, 1247
Bsp120I GGGCCC 1 cut(s) 197
Bsp1286I GDGCHC 3 cut(s) 165, 201, 957
Bsp143I GATC 5 cut(s) 408, 569, 807, 903, 1047
Bsp1720I GCTNAGC 1 cut(s) 1143
BspANI GGCC 8 cut(s) 83, 176, 199, 434, 453, 473, 1175, 1247
BspCNI CTCAG 2 cut(s) 1096, 1135
BspFNI CGCG 3 cut(s) 290, 462, 635
BspLI GGNNCC 7 cut(s) 94, 162, 199, 200, 454, 487, 1402
BspPI GGATC 2 cut(s) 577, 815
BspT107I GGYRCC 2 cut(s) 92, 160
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 4 cut(s) 663, 1181, 1404, 1440
BsrFI RCCGGY 2 cut(s) 1175, 1384
BsrI ACTGG 3 cut(s) 159, 219, 839
BssAI RCCGGY 2 cut(s) 1175, 1384
BssECI CCNNGG 5 cut(s) 96, 288, 336, 366, 393
BssMI GATC 5 cut(s) 408, 569, 807, 903, 1047
BssNI GRCGYC 2 cut(s) 50, 348
BssSI CACGAG 2 cut(s) 387, 1011
BssT1I CCWWGG 2 cut(s) 336, 366
Bst2BI CACGAG 2 cut(s) 387, 1011
Bst4CI ACNGT 7 cut(s) 7, 248, 279, 688, 896, 1441, 1480
BstACI GRCGYC 2 cut(s) 50, 348
BstBAI YACGTR 1 cut(s) 145
BstC8I GCNNGC 2 cut(s) 197, 1345
BstDEI CTNAG 3 cut(s) 1095, 1104, 1143
BstDSI CCRYGG 2 cut(s) 288, 393
BstEII GGTNACC 1 cut(s) 1219
BstF5I GGATG 1 cut(s) 882
BstFNI CGCG 3 cut(s) 290, 462, 635
BstHHI GCGC 2 cut(s) 464, 635
BstKTI GATC 5 cut(s) 411, 572, 810, 906, 1050
BstMAI GTCTC 1 cut(s) 993
BstMBI GATC 5 cut(s) 408, 569, 807, 903, 1047
BstMCI CGRYCG 3 cut(s) 247, 278, 906
BstNSI RCATGY 2 cut(s) 445, 1121
BstPI GGTNACC 1 cut(s) 1219
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 2 cut(s) 238, 1225
BstSLI GKGCMC 2 cut(s) 165, 201
BstUI CGCG 3 cut(s) 290, 462, 635
BstV1I GCAGC 5 cut(s) 133, 160, 283, 1272, 1396
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 1 cut(s) 807
BstYI RGATCY 1 cut(s) 807
BsuI GTATCC 2 cut(s) 323, 712
BsuRI GGCC 8 cut(s) 83, 176, 199, 434, 453, 473, 1175, 1247
BtgI CCRYGG 2 cut(s) 288, 393
BtrI CACGTC 1 cut(s) 430
BtsCI GGATG 1 cut(s) 882
Cac8I GCNNGC 2 cut(s) 197, 1345
CaiI CAGNNNCTG 1 cut(s) 154
CfoI GCGC 2 cut(s) 464, 635
Cfr10I RCCGGY 2 cut(s) 1175, 1384
Cfr13I GGNCC 5 cut(s) 174, 197, 198, 452, 1349
Cfr42I CCGCGG 1 cut(s) 291
CseI GACGC 2 cut(s) 39, 337
Csp6I GTAC 2 cut(s) 523, 1058
CspAI ACCGGT 1 cut(s) 1384
CspCI CAANNNNNGTGG 2 cut(s) 1252, 1287
CviAII CATG 8 cut(s) 16, 442, 520, 535, 843, 928, 958, 1118
CviQI GTAC 2 cut(s) 523, 1058
DdeI CTNAG 3 cut(s) 1095, 1104, 1143
DpnI GATC 5 cut(s) 410, 571, 809, 905, 1049
DpnII GATC 5 cut(s) 408, 569, 807, 903, 1047
DraI TTTAAA 1 cut(s) 784
DraIII CACNNNGTG 1 cut(s) 592
DrdI GACNNNNNNGTC 1 cut(s) 347
DseDI GACNNNNNNGTC 1 cut(s) 347
EaeI YGGCCR 2 cut(s) 432, 471
EciI GGCGGA 1 cut(s) 1152
Eco130I CCWWGG 2 cut(s) 336, 366
Eco24I GRGCYC 2 cut(s) 201, 957
Eco47I GGWCC 1 cut(s) 1349
Eco91I GGTNACC 1 cut(s) 1219
EcoO109I RGGNCCY 2 cut(s) 198, 452
EcoO65I GGTNACC 1 cut(s) 1219
EcoT14I CCWWGG 2 cut(s) 336, 366
EcoT38I GRGCYC 2 cut(s) 201, 957
ErhI CCWWGG 2 cut(s) 336, 366
FaeI CATG 8 cut(s) 19, 445, 523, 538, 846, 931, 961, 1121
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 2 cut(s) 913, 1219
FatI CATG 8 cut(s) 15, 441, 519, 534, 842, 927, 957, 1117
FauI CCCGC 2 cut(s) 188, 283
FbaI TGATCA 1 cut(s) 1047
FblI GTMKAC 1 cut(s) 891
FokI GGATG 1 cut(s) 889
FriOI GRGCYC 2 cut(s) 201, 957
FspBI CTAG 2 cut(s) 1061, 1214
GlaI GCGC 2 cut(s) 463, 634
GsuI CTGGAG 1 cut(s) 1440
HaeIII GGCC 8 cut(s) 83, 176, 199, 434, 453, 473, 1175, 1247
HapII CCGG 8 cut(s) 44, 96, 207, 357, 483, 567, 1176, 1385
HgaI GACGC 2 cut(s) 39, 337
HhaI GCGC 2 cut(s) 464, 635
Hin1I GRCGYC 2 cut(s) 50, 348
Hin1II CATG 8 cut(s) 19, 445, 523, 538, 846, 931, 961, 1121
Hin6I GCGC 2 cut(s) 462, 633
HinP1I GCGC 2 cut(s) 462, 633
HinfI GANTC 6 cut(s) 362, 580, 637, 916, 1296, 1358
HpaII CCGG 8 cut(s) 44, 96, 207, 357, 483, 567, 1176, 1385
HphI GGTGA 5 cut(s) 595, 676, 752, 832, 1231
Hpy166II GTNNAC 4 cut(s) 212, 628, 892, 947
Hpy188I TCNGA 6 cut(s) 490, 545, 678, 726, 764, 1370
Hpy188III TCNNGA 3 cut(s) 907, 1300, 1466
Hpy8I GTNNAC 4 cut(s) 212, 628, 892, 947
Hpy99I CGWCG 1 cut(s) 1133
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 7 cut(s) 7, 248, 279, 688, 896, 1441, 1480
HpyCH4IV ACGT 2 cut(s) 144, 429
HpyCH4V TGCA 9 cut(s) 103, 121, 148, 220, 252, 586, 842, 1181, 1260
HpyF3I CTNAG 3 cut(s) 1095, 1104, 1143
HpySE526I ACGT 2 cut(s) 144, 429
Hsp92I GRCGYC 2 cut(s) 50, 348
Hsp92II CATG 8 cut(s) 19, 445, 523, 538, 846, 931, 961, 1121
HspAI GCGC 2 cut(s) 462, 633
Ksp22I TGATCA 1 cut(s) 1047
KspI CCGCGG 1 cut(s) 291
Kzo9I GATC 5 cut(s) 408, 569, 807, 903, 1047
LmnI GCTCC 4 cut(s) 359, 1025, 1139, 1400
Lsp1109I GCAGC 5 cut(s) 133, 160, 283, 1272, 1396
LweI GCATC 2 cut(s) 1120, 1317
MaeI CTAG 2 cut(s) 1061, 1214
MaeII ACGT 2 cut(s) 144, 429
MaeIII GTNAC 6 cut(s) 233, 444, 728, 820, 1090, 1219
MalI GATC 5 cut(s) 410, 571, 809, 905, 1049
MbiI CCGCTC 1 cut(s) 354
MboI GATC 5 cut(s) 408, 569, 807, 903, 1047
MboII GAAGA 6 cut(s) 310, 508, 511, 523, 589, 805
MflI RGATCY 1 cut(s) 807
MhlI GDGCHC 3 cut(s) 165, 201, 957
MlsI TGGCCA 1 cut(s) 434
MluCI AATT 4 cut(s) 104, 720, 768, 1051
MluNI TGGCCA 1 cut(s) 434
MlyI GAGTC 2 cut(s) 925, 1305
MmeI TCCRAC 2 cut(s) 513, 523
Mox20I TGGCCA 1 cut(s) 434
MscI TGGCCA 1 cut(s) 434
MseI TTAA 4 cut(s) 642, 783, 1020, 1501
MslI CAYNNNNRTG 2 cut(s) 1116, 1122
Msp20I TGGCCA 1 cut(s) 434
MspA1I CMGCKG 3 cut(s) 124, 290, 1460
MspI CCGG 8 cut(s) 44, 96, 207, 357, 483, 567, 1176, 1385
MspR9I CCNGG 1 cut(s) 97
Mva1269I GAATGC 1 cut(s) 1230
MvnI CGCG 3 cut(s) 290, 462, 635
NciI CCSGG 1 cut(s) 97
NdeII GATC 5 cut(s) 408, 569, 807, 903, 1047
NlaIII CATG 8 cut(s) 19, 445, 523, 538, 846, 931, 961, 1121
NlaIV GGNNCC 7 cut(s) 94, 162, 199, 200, 454, 487, 1402
NmuCI GTSAC 3 cut(s) 820, 1090, 1219
NspI RCATGY 2 cut(s) 445, 1121
PciI ACATGT 1 cut(s) 441
PcsI WCGNNNNNNNCGW 2 cut(s) 47, 312
PctI GAATGC 1 cut(s) 1230
PfeI GAWTC 4 cut(s) 362, 580, 637, 1358
PinAI ACCGGT 1 cut(s) 1384
Ple19I CGATCG 1 cut(s) 906
PleI GAGTC 2 cut(s) 924, 1304
PpsI GAGTC 2 cut(s) 924, 1304
Ppu21I YACGTR 1 cut(s) 145
PscI ACATGT 1 cut(s) 441
PspEI GGTNACC 1 cut(s) 1219
PspN4I GGNNCC 7 cut(s) 94, 162, 199, 200, 454, 487, 1402
PspOMI GGGCCC 1 cut(s) 197
PspPI GGNCC 5 cut(s) 174, 197, 198, 452, 1349
PstNI CAGNNNCTG 1 cut(s) 154
PsuI RGATCY 1 cut(s) 807
PvuI CGATCG 1 cut(s) 906
PvuII CAGCTG 2 cut(s) 124, 1460
RsaI GTAC 2 cut(s) 524, 1059
RsaNI GTAC 2 cut(s) 523, 1058
RseI CAYNNNNRTG 2 cut(s) 1116, 1122
SacII CCGCGG 1 cut(s) 291
SaqAI TTAA 4 cut(s) 642, 783, 1020, 1501
Sau3AI GATC 5 cut(s) 408, 569, 807, 903, 1047
Sau96I GGNCC 5 cut(s) 174, 197, 198, 452, 1349
SchI GAGTC 2 cut(s) 925, 1305
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 3 cut(s) 165, 201, 957
SfaNI GCATC 2 cut(s) 1120, 1317
SfcI CTRYAG 2 cut(s) 238, 1225
Sfr303I CCGCGG 1 cut(s) 291
SgrBI CCGCGG 1 cut(s) 291
SinI GGWCC 1 cut(s) 1349
SmiMI CAYNNNNRTG 2 cut(s) 1116, 1122
Sse9I AATT 4 cut(s) 104, 720, 768, 1051
SspI AATATT 2 cut(s) 1086, 1428
SspMI CTAG 2 cut(s) 1061, 1214
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 2 cut(s) 336, 366
TaaI ACNGT 7 cut(s) 7, 248, 279, 688, 896, 1441, 1480
TaiI ACGT 2 cut(s) 147, 432
TaqI TCGA 2 cut(s) 864, 1114
TasI AATT 4 cut(s) 104, 720, 768, 1051
TatI WGTACW 2 cut(s) 522, 1057
TauI GCSGC 6 cut(s) 273, 290, 566, 1150, 1153, 1156
TfiI GAWTC 4 cut(s) 362, 580, 637, 1358
Tru1I TTAA 4 cut(s) 642, 783, 1020, 1501
Tru9I TTAA 4 cut(s) 642, 783, 1020, 1501
TseFI GTSAC 3 cut(s) 820, 1090, 1219
TseI GCWGC 5 cut(s) 121, 148, 296, 1260, 1409
Tsp45I GTSAC 3 cut(s) 820, 1090, 1219
TspDTI ATGAA 4 cut(s) 32, 271, 523, 646
TspGWI ACGGA 1 cut(s) 304
VpaK11BI GGWCC 1 cut(s) 1349
XceI RCATGY 2 cut(s) 445, 1121
XmiI GTMKAC 1 cut(s) 891
XspI CTAG 2 cut(s) 1061, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.