Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001365

Physical Location & Seq

Genomic Coordinates Reverse (-)

8505184 .. 8506507

Gene Structure 1324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000011315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGTTGGTTATGGTATCCATACGTGAGAAAACATTTCCTAGTAACGATAAAGGTGAGGGAGGAGTGATGTTCTTCGGAAAAATTATGGTCGCTTTTAAAGAGTTGAAGAAGCTGATGTGGATCTTGCTTTTGGTGACTTGCTTGAACTGGATTGCATGGTTCGGCTTCTTACTATTCGACACAGCTTGGATGGGGAAAGAGGTCTACGGTGGTACGGTTGGGAAAGGGAGTCTTTACGACATGGGAGTTAGGGCTAGTTCACTTGGGCTCATGATAAACTCTATCGTGTTGGGGGTTATGTCTCTTGGGATTATCTACTTGGCTCGTGGGGTTAATGGAGCTAAACTACTCTGGGGAGTGATCAATTTTGTACTAGCCATTTGCCTTCTAATGACAATATTGGTCACTAAGTTGGCTGAGAAGCATCGACATGCCTCTGTCGTCGTTGGCGGAGCTGAGCCGCCGCCGCCGCCCCCTGCTGGTATCAAGGCTGATGCATTGCTTATATTTGCGGTGTTGGGGATACCTCTAGCGGTGACCTACAACATTCCCTTTGCTATGGCCTCCATATTTTGCAGCAACTCTGGTGGAGGACAAGATGCTTGTATCTTTAGTAAGCGGACCATTAGATTCTACTTTCGGAGGGGAAACTTACCGGCATTTGTGTTGGGAGCCATTGCTGCTGTAATAAGTGGAATATTGGCAATGACTGTTCTACCATCTCCTCTAGCTGTTCGTGAAACTAATACTGTTGTAGCTGCTGGCTTCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

258

Amino Acids

27.53

Weight (kDa)

9.66

Isoelectric Point (pI)

29.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22710 AT1G66570 AT1G66570 AT1G66570 AT2G14670 AT5G06170 AT5G43610
fragaria_vesca	FvH4_2g12320 FvH4_2g12320 FvH4_2g12320 FvH4_2g22550 FvH4_2g40110 FvH4_2g40120
malus_domestica	MD05G1040000.v1.1 MD10G1045900.v1.1 MD12G1059700.v1.1
prunus_persica	Prupe.8G052700_v2.0.a1
pyrus_communis	pycom05g03270 pycom10g03210
rosa_chinensis	RchiOBHm_Chr6g0272341 RchiOBHm_Chr6g0300591 RchiOBHm_Chr6g0300631
rosa_laevigata	RLG00000011315 RLG00000011321 RLG00000013682
rosa_multiflora	Rmu_sc0004226.1_g000016 Rmu_sc0004226.1_g000019 Rmu_sc0009379.1_g000001 Rmu_sc0009424.1_g000002 Rmu_sc0022725.1_g000003 Rmu_sc0032937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167570 Rroxscaffold_7G00167610 Rroxscaffold_7G00196420
rosa_rugosa	Rorug06G0068000 Rorug06G0068100 Rorug06G0297700 Rorug06G0297800 Rorug06G0297800
rosa_samantha	Rh6AG184300 Rh6AG410300 Rh6AG410600 Rh6BG187600 Rh6BG417400 Rh6CG185700 Rh6CG425000 Rh6CG425300 Rh6DG177500 Rh6DG410500
rosa_wichuraiana	Rw6G015890 Rw6G015930 Rw6G035880 Rw6G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	204
AciI	CCGC	8 cut(s)	450, 461, 464, 467, 470, 512, 533, 619
AclWI	GGATC	1 cut(s)	128
AfaI	GTAC	2 cut(s)	214, 372
AfiI	CCNNNNNNNGG	1 cut(s)	479
AgsI	TTSAA	2 cut(s)	106, 145
AluBI	AGCT	6 cut(s)	112, 185, 341, 455, 731, 758
AluI	AGCT	6 cut(s)	112, 185, 341, 455, 731, 758
Alw26I	GTCTC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	1 cut(s)	561
ApeKI	GCWGC	3 cut(s)	576, 680, 758
AspS9I	GGNCC	1 cut(s)	621
AsuHPI	GGTGA	3 cut(s)	65, 145, 547
AvaII	GGWCC	1 cut(s)	621
BanII	GRGCYC	1 cut(s)	270
BauI	CACGAG	1 cut(s)	324
BbvI	GCAGC	3 cut(s)	588, 667, 745
BccI	CCATC	2 cut(s)	184, 727
BciVI	GTATCC	2 cut(s)	25, 516
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	5 cut(s)	39, 255, 374, 530, 728
BfuI	GTATCC	2 cut(s)	25, 516
BisI	GCNGC	7 cut(s)	461, 464, 467, 470, 577, 681, 759
BlpI	GCTNAGC	1 cut(s)	456
BlsI	GCNGC	7 cut(s)	462, 465, 468, 471, 578, 682, 760
Bme18I	GGWCC	1 cut(s)	621
BmgT120I	GGNCC	1 cut(s)	621
BmiI	GGNNCC	1 cut(s)	673
BmsI	GCATC	3 cut(s)	433, 484, 589
Bpu1102I	GCTNAGC	1 cut(s)	456
BsaAI	YACGTR	1 cut(s)	23
BsaBI	GATNNNNATC	1 cut(s)	119
Bsc4I	CCNNNNNNNGG	1 cut(s)	479
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	1 cut(s)	152
Bse3DI	GCAATG	3 cut(s)	497, 675, 711
Bse8I	GATNNNNATC	1 cut(s)	119
BseGI	GGATG	1 cut(s)	195
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	479
BseMI	GCAATG	3 cut(s)	497, 675, 711
BseMII	CTCAG	2 cut(s)	408, 447
BseNI	ACTGG	1 cut(s)	152
BseRI	GAGGAG	2 cut(s)	75, 714
BseXI	GCAGC	3 cut(s)	588, 667, 745
BshFI	GGCC	1 cut(s)	563
BsiSI	CCGG	1 cut(s)	656
BslI	CCNNNNNNNGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	306
BsnI	GGCC	1 cut(s)	563
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	2 cut(s)	120, 360
Bsp1720I	GCTNAGC	1 cut(s)	456
BspACI	CCGC	8 cut(s)	450, 461, 464, 467, 470, 512, 533, 619
BspANI	GGCC	1 cut(s)	563
BspCNI	CTCAG	2 cut(s)	409, 448
BspHI	TCATGA	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	673
BspPI	GGATC	1 cut(s)	128
BsrDI	GCAATG	3 cut(s)	497, 675, 711
BsrFI	RCCGGY	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	152
BssAI	RCCGGY	1 cut(s)	655
BssMI	GATC	2 cut(s)	120, 360
BssSI	CACGAG	1 cut(s)	324
Bst2BI	CACGAG	1 cut(s)	324
Bst4CI	ACNGT	4 cut(s)	209, 217, 712, 751
BstBAI	YACGTR	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	3 cut(s)	408, 417, 456
BstEII	GGTNACC	1 cut(s)	535
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	2 cut(s)	123, 363
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	2 cut(s)	120, 360
BstMWI	GCNNNNNNNGC	3 cut(s)	466, 469, 680
BstNSI	RCATGY	1 cut(s)	434
BstPI	GGTNACC	1 cut(s)	535
BstV1I	GCAGC	3 cut(s)	588, 667, 745
BstX2I	RGATCY	1 cut(s)	120
BstYI	RGATCY	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	25, 516
BsuRI	GGCC	1 cut(s)	563
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	763
CciI	TCATGA	1 cut(s)	270
Cfr10I	RCCGGY	1 cut(s)	655
Cfr13I	GGNCC	1 cut(s)	621
Csp6I	GTAC	2 cut(s)	213, 371
CspCI	CAANNNNNGTGG	2 cut(s)	568, 603
CviAII	CATG	4 cut(s)	156, 241, 271, 431
CviQI	GTAC	2 cut(s)	213, 371
DdeI	CTNAG	3 cut(s)	408, 417, 456
DpnI	GATC	2 cut(s)	122, 362
DpnII	GATC	2 cut(s)	120, 360
DraI	TTTAAA	1 cut(s)	97
EciI	GGCGGA	1 cut(s)	465
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	621
Eco91I	GGTNACC	1 cut(s)	535
EcoO65I	GGTNACC	1 cut(s)	535
EcoT22I	ATGCAT	1 cut(s)	499
EcoT38I	GRGCYC	1 cut(s)	270
FaeI	CATG	4 cut(s)	159, 244, 274, 434
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	4 cut(s)	155, 240, 270, 430
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	7 cut(s)	461, 464, 467, 470, 577, 681, 759
FokI	GGATG	1 cut(s)	202
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	7 cut(s)	461, 464, 467, 470, 577, 681, 759
FspBI	CTAG	5 cut(s)	39, 255, 374, 530, 728
GluI	GCNGC	7 cut(s)	461, 464, 467, 470, 577, 681, 759
HaeIII	GGCC	1 cut(s)	563
HapII	CCGG	1 cut(s)	656
Hin1II	CATG	4 cut(s)	159, 244, 274, 434
HinfI	GANTC	2 cut(s)	229, 630
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	3 cut(s)	65, 145, 547
Hpy166II	GTNNAC	2 cut(s)	205, 260
Hpy188I	TCNGA	2 cut(s)	77, 642
Hpy188III	TCNNGA	2 cut(s)	271, 737
Hpy8I	GTNNAC	2 cut(s)	205, 260
Hpy99I	CGWCG	1 cut(s)	446
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	4 cut(s)	209, 217, 712, 751
HpyCH4IV	ACGT	1 cut(s)	22
HpyCH4V	TGCA	3 cut(s)	155, 497, 576
HpyF10VI	GCNNNNNNNGC	3 cut(s)	466, 469, 680
HpyF3I	CTNAG	3 cut(s)	408, 417, 456
HpySE526I	ACGT	1 cut(s)	22
Hsp92II	CATG	4 cut(s)	159, 244, 274, 434
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	120, 360
LmnI	GCTCC	3 cut(s)	338, 452, 671
LpnPI	CCDG	7 cut(s)	133, 337, 465, 489, 570, 669, 747
Lsp1109I	GCAGC	3 cut(s)	588, 667, 745
LweI	GCATC	3 cut(s)	433, 484, 589
MaeI	CTAG	5 cut(s)	39, 255, 374, 530, 728
MaeII	ACGT	1 cut(s)	22
MaeIII	GTNAC	4 cut(s)	41, 133, 403, 535
MalI	GATC	2 cut(s)	122, 362
MboI	GATC	2 cut(s)	120, 360
MboII	GAAGA	2 cut(s)	64, 118
MflI	RGATCY	1 cut(s)	120
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	2 cut(s)	81, 364
MlyI	GAGTC	1 cut(s)	238
MnlI	CCTC	9 cut(s)	49, 53, 193, 445, 537, 574, 584, 636, 735
Mph1103I	ATGCAT	1 cut(s)	499
MseI	TTAA	3 cut(s)	96, 333, 772
MslI	CAYNNNNRTG	1 cut(s)	429
MspI	CCGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	3 cut(s)	466, 469, 680
NdeII	GATC	2 cut(s)	120, 360
NlaIII	CATG	4 cut(s)	159, 244, 274, 434
NlaIV	GGNNCC	1 cut(s)	673
NmuCI	GTSAC	3 cut(s)	133, 403, 535
NsiI	ATGCAT	1 cut(s)	499
NspI	RCATGY	1 cut(s)	434
PagI	TCATGA	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	630
PkrI	GCNGC	7 cut(s)	462, 465, 468, 471, 578, 682, 760
PleI	GAGTC	1 cut(s)	237
PpsI	GAGTC	1 cut(s)	237
Ppu21I	YACGTR	1 cut(s)	23
PspEI	GGTNACC	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	673
PspPI	GGNCC	1 cut(s)	621
PsuI	RGATCY	1 cut(s)	120
RsaI	GTAC	2 cut(s)	214, 372
RsaNI	GTAC	2 cut(s)	213, 371
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	3 cut(s)	96, 333, 772
SatI	GCNGC	7 cut(s)	461, 464, 467, 470, 577, 681, 759
Sau3AI	GATC	2 cut(s)	120, 360
Sau96I	GGNCC	1 cut(s)	621
SchI	GAGTC	1 cut(s)	238
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	3 cut(s)	433, 484, 589
SinI	GGWCC	1 cut(s)	621
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	2 cut(s)	81, 364
SsiI	CCGC	8 cut(s)	450, 461, 464, 467, 470, 512, 533, 619
SspI	AATATT	2 cut(s)	399, 699
SspMI	CTAG	5 cut(s)	39, 255, 374, 530, 728
TaaI	ACNGT	4 cut(s)	209, 217, 712, 751
TaiI	ACGT	1 cut(s)	25
TaqI	TCGA	2 cut(s)	177, 427
TasI	AATT	2 cut(s)	81, 364
TatI	WGTACW	1 cut(s)	370
TauI	GCSGC	4 cut(s)	463, 466, 469, 472
TfiI	GAWTC	1 cut(s)	630
Tru1I	TTAA	3 cut(s)	96, 333, 772
Tru9I	TTAA	3 cut(s)	96, 333, 772
TseFI	GTSAC	3 cut(s)	133, 403, 535
TseI	GCWGC	3 cut(s)	576, 680, 758
Tsp45I	GTSAC	3 cut(s)	133, 403, 535
VpaK11BI	GGWCC	1 cut(s)	621
XceI	RCATGY	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	5 cut(s)	39, 255, 374, 530, 728
Zsp2I	ATGCAT	1 cut(s)	499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.