Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004226.1

Orthogroup ID

OG0001365

Physical Location & Seq

Genomic Coordinates Reverse (-)

67376 .. 68321

Gene Structure 946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004226.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

atggaagttgatagggttaaatctccggagccgtcaagccctatatcaaagatagtgttggtagcctcaatcgcagccggagtacagttcggctgggcgcttcagctgtcgttgctgacgccgtacgtccagcaactgggggtcccacacaagtgggccgccgttgtctggctctgcggcccgatctcggggttgctggtgcaacccatcgtcggctactacagcgaccgcagcacatctcgtttcgggcgccgccgacctttcattgcaggcggggcagggcttgtcgccatcgctgttttcctgatcgggtacgccgccgacatcggagtccggtccggcgactcgttgcagaaatccacgaagccaagagccgtcgctgtctttgtggtggggttttgggttttagatgtggcgaataacatgctgcaaggcccatgtagggctctattggcggacctatccggctccgacagcaagaagatgagaacagcaaatgcgctctactcgttcttcatggccgtcggcaacgtcctggggtacgcggctggatcgctaaacgttcttcacaaggcatttccgttcaccatgaccaaggcatgcgacatttactgcgccaacctcaagagctgcttcttcctttcaatttttctgcttgtactactcactgtcttggccctaacgttagtgaaggaaacaccattcgagaaaaatgccgagggagcaggaggaggaggtctgttattgttcggtgaaatttttggtgcttttcgacagttgaagaagcccatgtggatccttcttctggacgtctttatgacatgggagtccgggcaggatcgcttggtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

283

Amino Acids

30.56

Weight (kDa)

9.42

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22710 AT1G66570 AT1G66570 AT1G66570 AT2G14670 AT5G06170 AT5G43610
fragaria_vesca	FvH4_2g12320 FvH4_2g12320 FvH4_2g12320 FvH4_2g22550 FvH4_2g40110 FvH4_2g40120
malus_domestica	MD05G1040000.v1.1 MD10G1045900.v1.1 MD12G1059700.v1.1
prunus_persica	Prupe.8G052700_v2.0.a1
pyrus_communis	pycom05g03270 pycom10g03210
rosa_chinensis	RchiOBHm_Chr6g0272341 RchiOBHm_Chr6g0300591 RchiOBHm_Chr6g0300631
rosa_laevigata	RLG00000011315 RLG00000011321 RLG00000013682
rosa_multiflora	Rmu_sc0004226.1_g000016 Rmu_sc0004226.1_g000019 Rmu_sc0009379.1_g000001 Rmu_sc0009424.1_g000002 Rmu_sc0022725.1_g000003 Rmu_sc0032937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167570 Rroxscaffold_7G00167610 Rroxscaffold_7G00196420
rosa_rugosa	Rorug06G0068000 Rorug06G0068100 Rorug06G0297700 Rorug06G0297800 Rorug06G0297800
rosa_samantha	Rh6AG184300 Rh6AG410300 Rh6AG410600 Rh6BG187600 Rh6BG417400 Rh6CG185700 Rh6CG425000 Rh6CG425300 Rh6DG177500 Rh6DG410500
rosa_wichuraiana	Rw6G015890 Rw6G015930 Rw6G035880 Rw6G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	329, 826
AatII	GACGTC	1 cut(s)	813
AccB1I	GGYRCC	1 cut(s)	249
AccB7I	CCANNNNNTGG	1 cut(s)	136
AccII	CGCG	1 cut(s)	545
AccIII	TCCGGA	1 cut(s)	25
AciI	CCGC	8 cut(s)	159, 177, 229, 253, 273, 318, 455, 545
AclI	AACGTT	2 cut(s)	561, 683
AclWI	GGATC	4 cut(s)	559, 790, 803, 846
AcoI	YGGCCR	1 cut(s)	519
AcsI	RAATTY	1 cut(s)	756
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	3 cut(s)	119, 250, 810
AfaI	GTAC	5 cut(s)	84, 125, 314, 542, 660
AfiI	CCNNNNNNNGG	7 cut(s)	136, 168, 187, 188, 212, 442, 805
AgsI	TTSAA	2 cut(s)	645, 781
AjnI	CCWGG	1 cut(s)	534
AleI	CACNNNNGTG	1 cut(s)	151
AluBI	AGCT	2 cut(s)	106, 630
AluI	AGCT	2 cut(s)	106, 630
AlwI	GGATC	4 cut(s)	559, 790, 803, 846
AlwNI	CAGNNNCTG	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	187
Aor13HI	TCCGGA	1 cut(s)	25
AoxI	GGCC	5 cut(s)	156, 178, 433, 519, 675
ApeKI	GCWGC	4 cut(s)	74, 231, 427, 630
ApoI	RAATTY	1 cut(s)	756
AspLEI	GCGC	4 cut(s)	100, 252, 502, 617
AspS9I	GGNCC	7 cut(s)	142, 156, 179, 336, 434, 457, 676
AsuC2I	CCSGG	1 cut(s)	832
AsuHPI	GGTGA	2 cut(s)	577, 764
AvaI	CYCGRG	1 cut(s)	187
AvaII	GGWCC	3 cut(s)	142, 336, 457
BamHI	GGATCC	1 cut(s)	795
BanI	GGYRCC	1 cut(s)	249
BanII	GRGCYC	1 cut(s)	448
BbvI	GCAGC	4 cut(s)	86, 243, 414, 617
BccI	CCATC	2 cut(s)	215, 299
BceAI	ACGGC	5 cut(s)	16, 106, 146, 359, 506
BcgI	CGANNNNNNTGC	4 cut(s)	406, 440, 695, 729
BciT130I	CCWGG	1 cut(s)	536
BcnI	CCSGG	1 cut(s)	832
BfmI	CTRYAG	1 cut(s)	220
BfoI	RGCGCY	2 cut(s)	101, 253
BisI	GCNGC	9 cut(s)	75, 159, 178, 232, 253, 318, 428, 546, 631
BlsI	GCNGC	9 cut(s)	76, 160, 179, 233, 254, 319, 429, 547, 632
Bme1390I	CCNGG	2 cut(s)	536, 832
Bme18I	GGWCC	3 cut(s)	142, 336, 457
BmeT110I	CYCGRG	1 cut(s)	187
BmgT120I	GGNCC	7 cut(s)	142, 156, 179, 336, 434, 457, 676
BmiI	GGNNCC	6 cut(s)	30, 143, 144, 251, 469, 797
BmrFI	CCNGG	2 cut(s)	536, 832
BmrI	ACTGGG	1 cut(s)	146
BmuI	ACTGGG	1 cut(s)	146
BpuEI	CTTGAG	1 cut(s)	608
BpuMI	CCSGG	1 cut(s)	832
BsaHI	GRCGYC	3 cut(s)	119, 250, 810
BsaJI	CCNNGG	3 cut(s)	535, 594, 717
BsaWI	WCCGGW	2 cut(s)	25, 333
Bsc4I	CCNNNNNNNGG	7 cut(s)	136, 168, 187, 188, 212, 442, 805
Bse1I	ACTGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	25
BseBI	CCWGG	1 cut(s)	536
BseDI	CCNNGG	3 cut(s)	535, 594, 717
BseLI	CCNNNNNNNGG	7 cut(s)	136, 168, 187, 188, 212, 442, 805
BseMI	GCAATG	1 cut(s)	264
BseNI	ACTGG	1 cut(s)	141
BseRI	GAGGAG	2 cut(s)	744, 747
BseXI	GCAGC	4 cut(s)	86, 243, 414, 617
BseYI	CCCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	545
Bsh1285I	CGRYCG	1 cut(s)	229
BshFI	GGCC	5 cut(s)	158, 180, 435, 521, 677
BshNI	GGYRCC	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	229
BsiHKCI	CYCGRG	1 cut(s)	187
BsiSI	CCGG	6 cut(s)	26, 78, 334, 339, 465, 831
BsiWI	CGTACG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	7 cut(s)	136, 168, 187, 188, 212, 442, 805
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	5 cut(s)	158, 180, 435, 521, 677
BsoBI	CYCGRG	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp13I	TCCGGA	1 cut(s)	25
Bsp143I	GATC	5 cut(s)	183, 306, 551, 795, 838
BspACI	CCGC	8 cut(s)	159, 177, 229, 253, 273, 318, 455, 545
BspANI	GGCC	5 cut(s)	158, 180, 435, 521, 677
BspEI	TCCGGA	1 cut(s)	25
BspFNI	CGCG	1 cut(s)	545
BspLI	GGNNCC	6 cut(s)	30, 143, 144, 251, 469, 797
BspPI	GGATC	4 cut(s)	559, 790, 803, 846
BspT107I	GGYRCC	1 cut(s)	249
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	141
BssECI	CCNNGG	3 cut(s)	535, 594, 717
BssMI	GATC	5 cut(s)	183, 306, 551, 795, 838
BssNI	GRCGYC	3 cut(s)	119, 250, 810
BssT1I	CCWWGG	1 cut(s)	594
Bst2UI	CCWGG	1 cut(s)	536
Bst4CI	ACNGT	3 cut(s)	87, 670, 777
BstACI	GRCGYC	3 cut(s)	119, 250, 810
BstC8I	GCNNGC	2 cut(s)	271, 601
BstFNI	CGCG	1 cut(s)	545
BstH2I	RGCGCY	2 cut(s)	101, 253
BstHHI	GCGC	4 cut(s)	100, 252, 502, 617
BstKTI	GATC	5 cut(s)	186, 309, 554, 798, 841
BstMBI	GATC	5 cut(s)	183, 306, 551, 795, 838
BstMCI	CGRYCG	1 cut(s)	229
BstMWI	GCNNNNNNNGC	8 cut(s)	71, 112, 222, 231, 275, 452, 474, 722
BstNI	CCWGG	1 cut(s)	536
BstNSI	RCATGY	2 cut(s)	427, 603
BstSCI	CCNGG	2 cut(s)	534, 830
BstSFI	CTRYAG	1 cut(s)	220
BstUI	CGCG	1 cut(s)	545
BstV1I	GCAGC	4 cut(s)	86, 243, 414, 617
BstX2I	RGATCY	1 cut(s)	795
BstXI	CCANNNNNNTGG	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	795
BsuRI	GGCC	5 cut(s)	158, 180, 435, 521, 677
BtgZI	GCGATG	1 cut(s)	277
BtsIMutI	CAGTG	1 cut(s)	666
Cac8I	GCNNGC	2 cut(s)	271, 601
CaiI	CAGNNNCTG	1 cut(s)	136
CfoI	GCGC	4 cut(s)	100, 252, 502, 617
Cfr13I	GGNCC	7 cut(s)	142, 156, 179, 336, 434, 457, 676
CpoI	CGGWCCG	1 cut(s)	336
CseI	GACGC	1 cut(s)	127
Csp6I	GTAC	5 cut(s)	83, 124, 313, 541, 659
CspI	CGGWCCG	1 cut(s)	336
CviAII	CATG	7 cut(s)	424, 438, 517, 589, 600, 790, 822
CviQI	GTAC	5 cut(s)	83, 124, 313, 541, 659
DinI	GGCGCC	1 cut(s)	251
DpnI	GATC	5 cut(s)	185, 308, 553, 797, 840
DpnII	GATC	5 cut(s)	183, 306, 551, 795, 838
DrdI	GACNNNNNNGTC	2 cut(s)	329, 826
DseDI	GACNNNNNNGTC	2 cut(s)	329, 826
EaeI	YGGCCR	1 cut(s)	519
EciI	GGCGGA	1 cut(s)	470
Eco130I	CCWWGG	1 cut(s)	594
Eco24I	GRGCYC	1 cut(s)	448
Eco47I	GGWCC	3 cut(s)	142, 336, 457
Eco57I	CTGAAG	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	187
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	1 cut(s)	534
EcoT14I	CCWWGG	1 cut(s)	594
EcoT38I	GRGCYC	1 cut(s)	448
EgeI	GGCGCC	1 cut(s)	251
EheI	GGCGCC	1 cut(s)	251
ErhI	CCWWGG	1 cut(s)	594
FaeI	CATG	7 cut(s)	427, 441, 520, 592, 603, 793, 825
FaiI	YATR	9 cut(s)	44, 425, 439, 518, 590, 601, 791, 818, 823
FalI	AAGNNNNNCTT	2 cut(s)	617, 649
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	7 cut(s)	423, 437, 516, 588, 599, 789, 821
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	9 cut(s)	75, 159, 178, 232, 253, 318, 428, 546, 631
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	9 cut(s)	75, 159, 178, 232, 253, 318, 428, 546, 631
GlaI	GCGC	4 cut(s)	99, 251, 501, 616
GluI	GCNGC	9 cut(s)	75, 159, 178, 232, 253, 318, 428, 546, 631
GsaI	CCCAGC	1 cut(s)	97
HaeII	RGCGCY	2 cut(s)	101, 253
HaeIII	GGCC	5 cut(s)	158, 180, 435, 521, 677
HapII	CCGG	6 cut(s)	26, 78, 334, 339, 465, 831
HgaI	GACGC	1 cut(s)	127
HhaI	GCGC	4 cut(s)	100, 252, 502, 617
Hin1I	GRCGYC	3 cut(s)	119, 250, 810
Hin1II	CATG	7 cut(s)	427, 441, 520, 592, 603, 793, 825
Hin6I	GCGC	4 cut(s)	98, 250, 500, 615
HinP1I	GCGC	4 cut(s)	98, 250, 500, 615
HinfI	GANTC	3 cut(s)	330, 344, 827
HpaII	CCGG	6 cut(s)	26, 78, 334, 339, 465, 831
HphI	GGTGA	2 cut(s)	577, 764
Hpy166II	GTNNAC	1 cut(s)	585
Hpy188I	TCNGA	3 cut(s)	329, 472, 851
Hpy188III	TCNNGA	5 cut(s)	26, 304, 625, 706, 806
Hpy8I	GTNNAC	1 cut(s)	585
Hpy99I	CGWCG	3 cut(s)	215, 380, 527
HpyAV	CCTTC	2 cut(s)	685, 809
HpyCH4III	ACNGT	3 cut(s)	87, 670, 777
HpyCH4IV	ACGT	5 cut(s)	126, 531, 561, 683, 810
HpyCH4V	TGCA	4 cut(s)	202, 269, 352, 430
HpyF10VI	GCNNNNNNNGC	8 cut(s)	71, 112, 222, 231, 275, 452, 474, 722
HpySE526I	ACGT	5 cut(s)	126, 531, 561, 683, 810
Hsp92I	GRCGYC	3 cut(s)	119, 250, 810
Hsp92II	CATG	7 cut(s)	427, 441, 520, 592, 603, 793, 825
HspAI	GCGC	4 cut(s)	98, 250, 500, 615
KasI	GGCGCC	1 cut(s)	249
KflI	GGGWCCC	1 cut(s)	142
Kpn2I	TCCGGA	1 cut(s)	25
Kzo9I	GATC	5 cut(s)	183, 306, 551, 795, 838
LmnI	GCTCC	3 cut(s)	28, 473, 722
Lsp1109I	GCAGC	4 cut(s)	86, 243, 414, 617
MaeII	ACGT	5 cut(s)	126, 531, 561, 683, 810
MalI	GATC	5 cut(s)	185, 308, 553, 797, 840
MboI	GATC	5 cut(s)	183, 306, 551, 795, 838
MboII	GAAGA	6 cut(s)	493, 505, 557, 628, 793, 794
MflI	RGATCY	1 cut(s)	795
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	2 cut(s)	645, 756
Mly113I	GGCGCC	1 cut(s)	250
MlyI	GAGTC	3 cut(s)	338, 339, 836
MmeI	TCCRAC	1 cut(s)	495
MnlI	CCTC	6 cut(s)	76, 632, 712, 722, 725, 728
MroI	TCCGGA	1 cut(s)	25
MseI	TTAA	1 cut(s)	18
MslI	CAYNNNNRTG	1 cut(s)	151
MspA1I	CMGCKG	1 cut(s)	106
MspI	CCGG	6 cut(s)	26, 78, 334, 339, 465, 831
MspR9I	CCNGG	2 cut(s)	536, 832
MvaI	CCWGG	1 cut(s)	536
MvnI	CGCG	1 cut(s)	545
MwoI	GCNNNNNNNGC	8 cut(s)	71, 112, 222, 231, 275, 452, 474, 722
NarI	GGCGCC	1 cut(s)	250
NciI	CCSGG	1 cut(s)	832
NdeII	GATC	5 cut(s)	183, 306, 551, 795, 838
NlaIII	CATG	7 cut(s)	427, 441, 520, 592, 603, 793, 825
NlaIV	GGNNCC	6 cut(s)	30, 143, 144, 251, 469, 797
NmeAIII	GCCGAG	1 cut(s)	742
NspI	RCATGY	2 cut(s)	427, 603
OliI	CACNNNNGTG	1 cut(s)	151
PaeI	GCATGC	1 cut(s)	603
Pfl23II	CGTACG	1 cut(s)	123
PflMI	CCANNNNNTGG	1 cut(s)	136
PkrI	GCNGC	9 cut(s)	76, 160, 179, 233, 254, 319, 429, 547, 632
PleI	GAGTC	3 cut(s)	338, 338, 835
PluTI	GGCGCC	1 cut(s)	253
PpsI	GAGTC	3 cut(s)	338, 338, 835
PpuMI	RGGWCCY	1 cut(s)	142
Psp1406I	AACGTT	2 cut(s)	561, 683
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	1 cut(s)	534
PspFI	CCCAGC	1 cut(s)	93
PspGI	CCWGG	1 cut(s)	534
PspLI	CGTACG	1 cut(s)	123
PspN4I	GGNNCC	6 cut(s)	30, 143, 144, 251, 469, 797
PspPI	GGNCC	7 cut(s)	142, 156, 179, 336, 434, 457, 676
PspPPI	RGGWCCY	1 cut(s)	142
PstNI	CAGNNNCTG	1 cut(s)	136
PsuI	RGATCY	1 cut(s)	795
PvuII	CAGCTG	1 cut(s)	106
RsaI	GTAC	5 cut(s)	84, 125, 314, 542, 660
RsaNI	GTAC	5 cut(s)	83, 124, 313, 541, 659
RseI	CAYNNNNRTG	1 cut(s)	151
Rsr2I	CGGWCCG	1 cut(s)	336
RsrII	CGGWCCG	1 cut(s)	336
SaqAI	TTAA	1 cut(s)	18
SatI	GCNGC	9 cut(s)	75, 159, 178, 232, 253, 318, 428, 546, 631
Sau3AI	GATC	5 cut(s)	183, 306, 551, 795, 838
Sau96I	GGNCC	7 cut(s)	142, 156, 179, 336, 434, 457, 676
SchI	GAGTC	3 cut(s)	338, 339, 836
ScrFI	CCNGG	2 cut(s)	536, 832
SduI	GDGCHC	1 cut(s)	448
SfcI	CTRYAG	1 cut(s)	220
SfoI	GGCGCC	1 cut(s)	251
SinI	GGWCC	3 cut(s)	142, 336, 457
SmiMI	CAYNNNNRTG	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	623
SmoI	CTYRAG	1 cut(s)	623
SphI	GCATGC	1 cut(s)	603
Sse9I	AATT	2 cut(s)	645, 756
SsiI	CCGC	8 cut(s)	159, 177, 229, 253, 273, 318, 455, 545
SspDI	GGCGCC	1 cut(s)	249
StyD4I	CCNGG	2 cut(s)	534, 830
StyI	CCWWGG	1 cut(s)	594
TaaI	ACNGT	3 cut(s)	87, 670, 777
TaiI	ACGT	5 cut(s)	129, 534, 564, 686, 813
TaqI	TCGA	2 cut(s)	705, 772
TasI	AATT	2 cut(s)	645, 756
TatI	WGTACW	2 cut(s)	82, 658
TauI	GCSGC	5 cut(s)	161, 180, 255, 320, 548
Tru1I	TTAA	1 cut(s)	18
Tru9I	TTAA	1 cut(s)	18
TscAI	CASTG	1 cut(s)	673
TseI	GCWGC	4 cut(s)	74, 231, 427, 630
TspDTI	ATGAA	2 cut(s)	253, 505
TspGWI	ACGGA	1 cut(s)	570
TspRI	CASTG	1 cut(s)	673
Van91I	CCANNNNNTGG	1 cut(s)	136
VpaK11BI	GGWCC	3 cut(s)	142, 336, 457
XapI	RAATTY	1 cut(s)	756
XceI	RCATGY	2 cut(s)	427, 603
ZraI	GACGTC	1 cut(s)	811

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.