Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0001365

Physical Location & Seq

Genomic Coordinates Forward (+)

3770145 .. 3772554

Gene Structure 2410 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03270.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATTGGGGCCTTTAAGGAGTTGAAGAGGCCAATGCTGGTGTTGCTTCTGGTGACGTGTCTAAACTGGATTGCGTGGTTCCCGTTCTTGCTGTTCGACACTGACTGGATGGGGAAGGAGGTGTACGGCGGCCAAGTCGGTAAAGGGCGGCTGTACGATTTGGGTGTGAGGGTTGGTTCACTTGGCCTCTTGTTAAACTCTGTCGTTTTGGGGTTCATGTCCCTTGGGATCGAGCTTCTCGGTCGTTGGGTTGGTGGTGTCAAGAGATTGTGGGCCATTGTCAACTTTTTGCTCGCCGTTTGTTTGGCCATTACTGTTTTGATCACTAAATTGGCTGAGGCCAGCCGACACGGTCACGGCGGTGTTGAGCCCCCACCGCCACCTGCCAGTGTCAAGGCCGGTGCATTGTCTCTGTTCGCCGTTCTTGGTATTCCTCTGGCGGTGACATACAGTATTCCTTTTGCCCTGGCATCCATATTTTCCAGCGATTCTGGTGCAGGCCAAGGGCTTTCATTGGGAGTCTTAAATCTTGCAATTGTCCTACCACAGATGTTTGTGTCCGTCGTAAGTGGACCGTGGGATGCTTTGTTCGGTGGTGGTAATTTACCGGCATTTGTCGCGGGAGCGGTTGCTGCCATAGTAAGTGGAATATTGGCTCTCTTTATGCTACCGTCTCCGCCACCCGATCTTCCATCGAACAACAATGCAGGAGCTGCTGTTGTTGCCTTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

245

Amino Acids

25.39

Weight (kDa)

8.64

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22710 AT1G66570 AT1G66570 AT1G66570 AT2G14670 AT5G06170 AT5G43610
fragaria_vesca	FvH4_2g12320 FvH4_2g12320 FvH4_2g12320 FvH4_2g22550 FvH4_2g40110 FvH4_2g40120
malus_domestica	MD05G1040000.v1.1 MD10G1045900.v1.1 MD12G1059700.v1.1
prunus_persica	Prupe.8G052700_v2.0.a1
pyrus_communis	pycom05g03270 pycom10g03210
rosa_chinensis	RchiOBHm_Chr6g0272341 RchiOBHm_Chr6g0300591 RchiOBHm_Chr6g0300631
rosa_laevigata	RLG00000011315 RLG00000011321 RLG00000013682
rosa_multiflora	Rmu_sc0004226.1_g000016 Rmu_sc0004226.1_g000019 Rmu_sc0009379.1_g000001 Rmu_sc0009424.1_g000002 Rmu_sc0022725.1_g000003 Rmu_sc0032937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167570 Rroxscaffold_7G00167610 Rroxscaffold_7G00196420
rosa_rugosa	Rorug06G0068000 Rorug06G0068100 Rorug06G0297700 Rorug06G0297800 Rorug06G0297800
rosa_samantha	Rh6AG184300 Rh6AG410300 Rh6AG410600 Rh6BG187600 Rh6BG417400 Rh6CG185700 Rh6CG425000 Rh6CG425300 Rh6DG177500 Rh6DG410500
rosa_wichuraiana	Rw6G015890 Rw6G015930 Rw6G035880 Rw6G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	391
Acc36I	ACCTGC	1 cut(s)	391
AccBSI	CCGCTC	1 cut(s)	626
AccII	CGCG	1 cut(s)	620
AciI	CCGC	8 cut(s)	129, 148, 360, 377, 440, 620, 626, 677
AclWI	GGATC	1 cut(s)	236
AcoI	YGGCCR	2 cut(s)	130, 306
AfaI	GTAC	2 cut(s)	125, 155
AflIII	ACRYGT	1 cut(s)	56
AgsI	TTSAA	1 cut(s)	25
AjiI	CACGTC	1 cut(s)	57
AjnI	CCWGG	1 cut(s)	465
AleI	CACNNNNGTG	1 cut(s)	360
AloI	GAACNNNNNNTCC	2 cut(s)	572, 604
AluBI	AGCT	2 cut(s)	235, 713
AluI	AGCT	2 cut(s)	235, 713
Alw26I	GTCTC	2 cut(s)	414, 678
AlwI	GGATC	1 cut(s)	236
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	9 cut(s)	9, 29, 130, 184, 273, 306, 339, 396, 499
ApeKI	GCWGC	2 cut(s)	632, 713
AspS9I	GGNCC	3 cut(s)	9, 273, 572
AsuHPI	GGTGA	2 cut(s)	64, 454
AvaII	GGWCC	1 cut(s)	572
BalI	TGGCCA	1 cut(s)	308
BanII	GRGCYC	1 cut(s)	372
BarI	GAAGNNNNNNTAC	2 cut(s)	107, 139
BbvCI	CCTCAGC	1 cut(s)	336
BbvI	GCAGC	2 cut(s)	619, 700
BccI	CCATC	2 cut(s)	103, 700
BceAI	ACGGC	4 cut(s)	142, 281, 373, 404
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BciT130I	CCWGG	1 cut(s)	467
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	414, 678
BfuAI	ACCTGC	1 cut(s)	391
BisI	GCNGC	4 cut(s)	130, 149, 633, 714
BlsI	GCNGC	4 cut(s)	131, 150, 634, 715
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	572
BmgBI	CACGTC	1 cut(s)	57
BmgT120I	GGNCC	3 cut(s)	9, 273, 572
BmiI	GGNNCC	2 cut(s)	10, 80
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	2 cut(s)	479, 571
Bpu10I	CCTNAGC	1 cut(s)	336
BsaJI	CCNNGG	4 cut(s)	223, 465, 502, 575
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bse118I	RCCGGY	2 cut(s)	398, 607
Bse1I	ACTGG	3 cut(s)	71, 110, 387
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	4 cut(s)	223, 465, 502, 575
BseGI	GGATG	3 cut(s)	114, 470, 586
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	3 cut(s)	71, 110, 387
BseXI	GCAGC	2 cut(s)	619, 700
BsgI	GTGCAG	1 cut(s)	516
Bsh1236I	CGCG	1 cut(s)	620
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	9 cut(s)	11, 31, 132, 186, 275, 308, 341, 398, 501
BsiEI	CGRYCG	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	399, 608
BslFI	GGGAC	1 cut(s)	205
BsmAI	GTCTC	2 cut(s)	414, 678
BsmBI	CGTCTC	1 cut(s)	678
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	9 cut(s)	11, 31, 132, 186, 275, 308, 341, 398, 501
Bsp1286I	GDGCHC	1 cut(s)	372
Bsp143I	GATC	3 cut(s)	228, 321, 685
BspACI	CCGC	8 cut(s)	129, 148, 360, 377, 440, 620, 626, 677
BspANI	GGCC	9 cut(s)	11, 31, 132, 186, 275, 308, 341, 398, 501
BspCNI	CTCAG	1 cut(s)	328
BspFNI	CGCG	1 cut(s)	620
BspLI	GGNNCC	2 cut(s)	10, 80
BspMI	ACCTGC	1 cut(s)	391
BspPI	GGATC	1 cut(s)	236
BsrBI	CCGCTC	1 cut(s)	626
BsrFI	RCCGGY	2 cut(s)	398, 607
BsrI	ACTGG	3 cut(s)	71, 110, 387
BssAI	RCCGGY	2 cut(s)	398, 607
BssECI	CCNNGG	4 cut(s)	223, 465, 502, 575
BssMI	GATC	3 cut(s)	228, 321, 685
BssT1I	CCWWGG	2 cut(s)	223, 502
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	5 cut(s)	316, 353, 452, 576, 672
Bst6I	CTCTTC	1 cut(s)	20
BstAPI	GCANNNNNTGC	1 cut(s)	713
BstC8I	GCNNGC	3 cut(s)	294, 343, 499
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	575
BstF5I	GGATG	3 cut(s)	114, 470, 586
BstFNI	CGCG	1 cut(s)	620
BstKTI	GATC	3 cut(s)	231, 324, 688
BstMAI	GTCTC	2 cut(s)	414, 678
BstMBI	GATC	3 cut(s)	228, 321, 685
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	6 cut(s)	43, 376, 617, 632, 713, 722
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstUI	CGCG	1 cut(s)	620
BstV1I	GCAGC	2 cut(s)	619, 700
BsuRI	GGCC	9 cut(s)	11, 31, 132, 186, 275, 308, 341, 398, 501
BtgI	CCRYGG	1 cut(s)	575
BtrI	CACGTC	1 cut(s)	57
BtsCI	GGATG	3 cut(s)	114, 470, 586
BtsIMutI	CAGTG	2 cut(s)	99, 394
BveI	ACCTGC	1 cut(s)	391
Cac8I	GCNNGC	3 cut(s)	294, 343, 499
CaiI	CAGNNNCTG	1 cut(s)	713
Cfr10I	RCCGGY	2 cut(s)	398, 607
Cfr13I	GGNCC	3 cut(s)	9, 273, 572
Csp6I	GTAC	2 cut(s)	124, 154
CviAII	CATG	1 cut(s)	217
CviQI	GTAC	2 cut(s)	124, 154
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	3 cut(s)	230, 323, 687
DpnII	GATC	3 cut(s)	228, 321, 685
EaeI	YGGCCR	2 cut(s)	130, 306
Eam1104I	CTCTTC	1 cut(s)	20
EarI	CTCTTC	1 cut(s)	20
EciI	GGCGGA	1 cut(s)	666
Eco130I	CCWWGG	2 cut(s)	223, 502
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	572
EcoO109I	RGGNCCY	1 cut(s)	9
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	2 cut(s)	223, 502
EcoT38I	GRGCYC	1 cut(s)	372
ErhI	CCWWGG	2 cut(s)	223, 502
Esp3I	CGTCTC	1 cut(s)	678
FaeI	CATG	1 cut(s)	220
FaiI	YATR	5 cut(s)	218, 448, 476, 638, 665
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	1 cut(s)	216
FauI	CCCGC	1 cut(s)	613
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	4 cut(s)	130, 149, 633, 714
FokI	GGATG	3 cut(s)	121, 457, 593
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	4 cut(s)	130, 149, 633, 714
GluI	GCNGC	4 cut(s)	130, 149, 633, 714
HaeIII	GGCC	9 cut(s)	11, 31, 132, 186, 275, 308, 341, 398, 501
HapII	CCGG	2 cut(s)	399, 608
Hin1II	CATG	1 cut(s)	220
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	2 cut(s)	488, 519
HpaII	CCGG	2 cut(s)	399, 608
HphI	GGTGA	2 cut(s)	64, 454
Hpy166II	GTNNAC	4 cut(s)	124, 179, 283, 572
Hpy188III	TCNNGA	1 cut(s)	262
Hpy8I	GTNNAC	4 cut(s)	124, 179, 283, 572
Hpy99I	CGWCG	1 cut(s)	566
HpyAV	CCTTC	1 cut(s)	109
HpyCH4III	ACNGT	5 cut(s)	316, 353, 452, 576, 672
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	4 cut(s)	404, 497, 533, 707
HpyF10VI	GCNNNNNNNGC	6 cut(s)	43, 376, 617, 632, 713, 722
HpyF3I	CTNAG	1 cut(s)	336
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	228, 321, 685
LmnI	GCTCC	2 cut(s)	623, 710
Lsp1109I	GCAGC	2 cut(s)	619, 700
LweI	GCATC	2 cut(s)	479, 571
MaeII	ACGT	1 cut(s)	56
MaeIII	GTNAC	3 cut(s)	52, 353, 442
MalI	GATC	3 cut(s)	230, 323, 687
MbiI	CCGCTC	1 cut(s)	626
MboI	GATC	3 cut(s)	228, 321, 685
MboII	GAAGA	2 cut(s)	37, 680
MfeI	CAATTG	1 cut(s)	534
MhlI	GDGCHC	1 cut(s)	372
MlsI	TGGCCA	1 cut(s)	308
MluCI	AATT	3 cut(s)	329, 534, 601
MluNI	TGGCCA	1 cut(s)	308
MlyI	GAGTC	1 cut(s)	528
MnlI	CCTC	6 cut(s)	21, 112, 162, 197, 331, 444
Mox20I	TGGCCA	1 cut(s)	308
MscI	TGGCCA	1 cut(s)	308
MseI	TTAA	3 cut(s)	15, 194, 524
MslI	CAYNNNNRTG	1 cut(s)	360
Msp20I	TGGCCA	1 cut(s)	308
MspI	CCGG	2 cut(s)	399, 608
MspR9I	CCNGG	1 cut(s)	467
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	467
MvnI	CGCG	1 cut(s)	620
MwoI	GCNNNNNNNGC	6 cut(s)	43, 376, 617, 632, 713, 722
NdeII	GATC	3 cut(s)	228, 321, 685
NlaIII	CATG	1 cut(s)	220
NlaIV	GGNNCC	2 cut(s)	10, 80
NmuCI	GTSAC	3 cut(s)	52, 353, 442
OliI	CACNNNNGTG	1 cut(s)	360
PaqCI	CACCTGC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	488
PflFI	GACNNNGTC	1 cut(s)	351
PkrI	GCNGC	4 cut(s)	131, 150, 634, 715
PleI	GAGTC	1 cut(s)	527
PpsI	GAGTC	1 cut(s)	527
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	2 cut(s)	10, 80
PspPI	GGNCC	3 cut(s)	9, 273, 572
PstNI	CAGNNNCTG	1 cut(s)	713
PsyI	GACNNNGTC	1 cut(s)	351
RsaI	GTAC	2 cut(s)	125, 155
RsaNI	GTAC	2 cut(s)	124, 154
RseI	CAYNNNNRTG	1 cut(s)	360
SaqAI	TTAA	3 cut(s)	15, 194, 524
SatI	GCNGC	4 cut(s)	130, 149, 633, 714
Sau3AI	GATC	3 cut(s)	228, 321, 685
Sau96I	GGNCC	3 cut(s)	9, 273, 572
SchI	GAGTC	1 cut(s)	528
ScrFI	CCNGG	1 cut(s)	467
SduI	GDGCHC	1 cut(s)	372
SetI	ASST	5 cut(s)	59, 123, 237, 385, 715
SfaNI	GCATC	2 cut(s)	479, 571
SinI	GGWCC	1 cut(s)	572
SmiMI	CAYNNNNRTG	1 cut(s)	360
Sse9I	AATT	3 cut(s)	329, 534, 601
SsiI	CCGC	8 cut(s)	129, 148, 360, 377, 440, 620, 626, 677
SspI	AATATT	1 cut(s)	651
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	2 cut(s)	223, 502
TaaI	ACNGT	5 cut(s)	316, 353, 452, 576, 672
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	3 cut(s)	96, 231, 695
TaqII	GACCGA	1 cut(s)	230
TasI	AATT	3 cut(s)	329, 534, 601
TauI	GCSGC	2 cut(s)	132, 151
TfiI	GAWTC	1 cut(s)	488
Tru1I	TTAA	3 cut(s)	15, 194, 524
Tru9I	TTAA	3 cut(s)	15, 194, 524
TscAI	CASTG	2 cut(s)	106, 394
TseFI	GTSAC	3 cut(s)	52, 353, 442
TseI	GCWGC	2 cut(s)	632, 713
Tsp45I	GTSAC	3 cut(s)	52, 353, 442
TspDTI	ATGAA	2 cut(s)	205, 501
TspGWI	ACGGA	1 cut(s)	550
TspRI	CASTG	2 cut(s)	106, 394
Tth111I	GACNNNGTC	1 cut(s)	351
VpaK11BI	GGWCC	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.