Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001365

Physical Location & Seq

Genomic Coordinates Forward (+)

9054645 .. 9055168

Gene Structure 524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0068100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGCATAAAATGGCAACAAACCAACAAAGATTTGGTGCTCTTCTTCTTCTCCTTCTTTCGAGTTTTAGCCTTCTTCGCATCGAAGCAAGGCCGTTACGCAGTTACAGAGGGATGGATGGTTTGCCATTTGGTATGGTGAAGCGTTCAGGGCCAAGCAAAGGTGGTGGAGGACACAGAAGATGGGCTGCTCGGGTTCTGCTGGTGCTACATGAAATCAAAGACAACTCTGGCCCGAGTCCTGGAGTTGGTCACCAGAAGGGCAATGGCATACACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

92

Amino Acids

10.04

Weight (kDa)

11.72

Isoelectric Point (pI)

69.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22710 AT1G66570 AT1G66570 AT1G66570 AT2G14670 AT5G06170 AT5G43610
fragaria_vesca	FvH4_2g12320 FvH4_2g12320 FvH4_2g12320 FvH4_2g22550 FvH4_2g40110 FvH4_2g40120
malus_domestica	MD05G1040000.v1.1 MD10G1045900.v1.1 MD12G1059700.v1.1
prunus_persica	Prupe.8G052700_v2.0.a1
pyrus_communis	pycom05g03270 pycom10g03210
rosa_chinensis	RchiOBHm_Chr6g0272341 RchiOBHm_Chr6g0300591 RchiOBHm_Chr6g0300631
rosa_laevigata	RLG00000011315 RLG00000011321 RLG00000013682
rosa_multiflora	Rmu_sc0004226.1_g000016 Rmu_sc0004226.1_g000019 Rmu_sc0009379.1_g000001 Rmu_sc0009424.1_g000002 Rmu_sc0022725.1_g000003 Rmu_sc0032937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167570 Rroxscaffold_7G00167610 Rroxscaffold_7G00196420
rosa_rugosa	Rorug06G0068000 Rorug06G0068100 Rorug06G0297700 Rorug06G0297800 Rorug06G0297800
rosa_samantha	Rh6AG184300 Rh6AG410300 Rh6AG410600 Rh6BG187600 Rh6BG417400 Rh6CG185700 Rh6CG425000 Rh6CG425300 Rh6DG177500 Rh6DG410500
rosa_wichuraiana	Rw6G015890 Rw6G015930 Rw6G035880 Rw6G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfiI	CCNNNNNNNGG	3 cut(s)	158, 239, 245
AjnI	CCWGG	1 cut(s)	238
Alw21I	GWGCWC	1 cut(s)	40
Ama87I	CYCGRG	2 cut(s)	189, 232
AoxI	GGCC	3 cut(s)	89, 149, 229
ApeKI	GCWGC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	149, 230
AsuHPI	GGTGA	2 cut(s)	148, 242
AvaI	CYCGRG	2 cut(s)	189, 232
Bbv12I	GWGCWC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	172
BccI	CCATC	3 cut(s)	106, 110, 174
BceAI	ACGGC	1 cut(s)	76
BciT130I	CCWGG	1 cut(s)	240
BisI	GCNGC	1 cut(s)	186
BlsI	GCNGC	1 cut(s)	187
Bme1390I	CCNGG	1 cut(s)	240
BmeT110I	CYCGRG	2 cut(s)	189, 232
BmgT120I	GGNCC	2 cut(s)	149, 230
BmrFI	CCNGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	87
BpmI	CTGGAG	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	3 cut(s)	158, 239, 245
Bse3DI	GCAATG	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	240
BseGI	GGATG	2 cut(s)	117, 121
BseLI	CCNNNNNNNGG	3 cut(s)	158, 239, 245
BseMI	GCAATG	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	172
BshFI	GGCC	3 cut(s)	91, 151, 231
BsiHKAI	GWGCWC	1 cut(s)	40
BsiHKCI	CYCGRG	2 cut(s)	189, 232
BslI	CCNNNNNNNGG	3 cut(s)	158, 239, 245
BsnI	GGCC	3 cut(s)	91, 151, 231
BsoBI	CYCGRG	2 cut(s)	189, 232
Bsp1286I	GDGCHC	1 cut(s)	40
BspANI	GGCC	3 cut(s)	91, 151, 231
BspQI	GCTCTTC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	268
Bst2UI	CCWGG	1 cut(s)	240
Bst6I	CTCTTC	1 cut(s)	45
BstEII	GGTNACC	1 cut(s)	248
BstF5I	GGATG	2 cut(s)	117, 121
BstMWI	GCNNNNNNNGC	2 cut(s)	75, 148
BstNI	CCWGG	1 cut(s)	240
BstPI	GGTNACC	1 cut(s)	248
BstSCI	CCNGG	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	172
BsuRI	GGCC	3 cut(s)	91, 151, 231
BtsCI	GGATG	2 cut(s)	117, 121
Cfr13I	GGNCC	2 cut(s)	149, 230
CspCI	CAANNNNNGTGG	2 cut(s)	145, 180
CviAII	CATG	1 cut(s)	209
CviJI	RGCY	5 cut(s)	69, 91, 151, 185, 231
CviKI_1	RGCY	5 cut(s)	69, 91, 151, 185, 231
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco88I	CYCGRG	2 cut(s)	189, 232
Eco91I	GGTNACC	1 cut(s)	248
EcoO65I	GGTNACC	1 cut(s)	248
EcoRII	CCWGG	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	1 cut(s)	212
FaiI	YATR	4 cut(s)	6, 134, 210, 269
FatI	CATG	1 cut(s)	208
Fnu4HI	GCNGC	1 cut(s)	186
FokI	GGATG	2 cut(s)	124, 128
Fsp4HI	GCNGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	186
GsuI	CTGGAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	91, 151, 231
Hin1II	CATG	1 cut(s)	212
HinfI	GANTC	1 cut(s)	235
HphI	GGTGA	2 cut(s)	148, 242
HpyAV	CCTTC	3 cut(s)	62, 80, 250
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	75, 148
Hsp92II	CATG	1 cut(s)	212
LguI	GCTCTTC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	132, 185, 213, 225, 252, 266
Lsp1109I	GCAGC	1 cut(s)	172
LweI	GCATC	1 cut(s)	87
MaeIII	GTNAC	3 cut(s)	93, 101, 248
MboII	GAAGA	5 cut(s)	32, 35, 38, 65, 189
MhlI	GDGCHC	1 cut(s)	40
MlyI	GAGTC	1 cut(s)	244
MnlI	CCTC	2 cut(s)	101, 161
Mph1103I	ATGCAT	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	240
MvaI	CCWGG	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	75, 148
NlaIII	CATG	1 cut(s)	212
NmuCI	GTSAC	1 cut(s)	248
NsiI	ATGCAT	1 cut(s)	6
PciSI	GCTCTTC	1 cut(s)	45
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	1 cut(s)	187
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
Psp6I	CCWGG	1 cut(s)	238
PspEI	GGTNACC	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	238
PspPI	GGNCC	2 cut(s)	149, 230
SapI	GCTCTTC	1 cut(s)	45
SatI	GCNGC	1 cut(s)	186
Sau96I	GGNCC	2 cut(s)	149, 230
SchI	GAGTC	1 cut(s)	244
ScrFI	CCNGG	1 cut(s)	240
SduI	GDGCHC	1 cut(s)	40
SetI	ASST	2 cut(s)	163, 276
SfaNI	GCATC	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	238
TaqI	TCGA	2 cut(s)	59, 81
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	225
XcmI	CCANNNNNNNNNTGG	2 cut(s)	29, 260
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.