Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001365

Physical Location & Seq

Genomic Coordinates Reverse (-)

8657337 .. 8663094

Gene Structure 5758 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00167570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGGCCTCATGTACTTCCCAACTGGGGTGCCCCACGAATGGACCTCCGTCGTCTGGCTGTGCGGGCCCCTCTCCGGTTTACTGGTGCAACCCATCGTGGGTTACTATAGCGACCGTTGCACGTCTCGTTTTGGTCGCCGCCGACCGTTCATAGCCGCGGGTGCTGCCCTTGTTACCATCTCCGTCTTCCTCATTGGATACGCCAAGGACATCGGCGTCCGCTCCGGCGATTCCTTGGACAAACATACGAAGCCACGAGCCGTGGTTGTGTTTGTGATCGGGTTTTGGATATTGGACGTGGCCAACAACATGTTACAAGGCCCCTGTCGCGCTCTTTTTGGCCGACATCTCCGGTTCCGACACGAAGAAGATGAGGACAGCCAATGCCATGTACTCATTCTTCATGGCTGTCGGAAATGTGCTTGGCTACGCCGCCGGATCGTTGAAGAATCTGCACAAGGTGAGGAAGGAGTGATGTTCTTCGGACAAATTATGGGTGCTTTTAAAGAGTTGAAGAAGCCGATGTGGATCTTGCTTTTGGTGACTTGTTTGAATTGGATTGCATGGTTCGGCTTCTTACTATTCGACACAGATTGGATGGGGAAAGAGATCTACGGTGGTACGGTCGGGAAAGGGAGTCTTTACGACATGGGAGTTAGGGCTGGTTCACTTGGGCTCGTGCTAAACTCTATCGTGTTGGGGGTTATGTCTCTTGGGATTATCTACTTGGCTCGTGGGGTTAATGGAGCTAAACAACTCTGGGGAGTGATCAATTTTGTACTAGCCATTTGCCTCCTAATGACAATATTCGTCACTAAGTTGGCTGAGAAGCATCGACATGCCTCTGTCGTCGTTGGCGGAGCTGGAGCCGCCGCCGCCCCCTGCTGGTATCAAGGCCGGTGCATTGCTTATATTTGCGGTGTTGGGGATACCTCTAGCGGTGACCTACAGCATTCCCTTTGCTATGGCCTCCATATTTTGCAGCAACTCTGGTGGAGGACAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

335

Amino Acids

37.18

Weight (kDa)

9.09

Isoelectric Point (pI)

38.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_2	PF13347	10 - 103	1.1e-06	MFS/sugar transport protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22710 AT1G66570 AT1G66570 AT1G66570 AT2G14670 AT5G06170 AT5G43610
fragaria_vesca	FvH4_2g12320 FvH4_2g12320 FvH4_2g12320 FvH4_2g22550 FvH4_2g40110 FvH4_2g40120
malus_domestica	MD05G1040000.v1.1 MD10G1045900.v1.1 MD12G1059700.v1.1
prunus_persica	Prupe.8G052700_v2.0.a1
pyrus_communis	pycom05g03270 pycom10g03210
rosa_chinensis	RchiOBHm_Chr6g0272341 RchiOBHm_Chr6g0300591 RchiOBHm_Chr6g0300631
rosa_laevigata	RLG00000011315 RLG00000011321 RLG00000013682
rosa_multiflora	Rmu_sc0004226.1_g000016 Rmu_sc0004226.1_g000019 Rmu_sc0009379.1_g000001 Rmu_sc0009424.1_g000002 Rmu_sc0022725.1_g000003 Rmu_sc0032937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167570 Rroxscaffold_7G00167610 Rroxscaffold_7G00196420
rosa_rugosa	Rorug06G0068000 Rorug06G0068100 Rorug06G0297700 Rorug06G0297800 Rorug06G0297800
rosa_samantha	Rh6AG184300 Rh6AG410300 Rh6AG410600 Rh6BG187600 Rh6BG417400 Rh6CG185700 Rh6CG425000 Rh6CG425300 Rh6DG177500 Rh6DG410500
rosa_wichuraiana	Rw6G015890 Rw6G015930 Rw6G035880 Rw6G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	215
AccB1I	GGYRCC	1 cut(s)	28
AccBSI	CCGCTC	1 cut(s)	222
AccII	CGCG	2 cut(s)	158, 330
AclWI	GGATC	2 cut(s)	446, 536
AcoI	YGGCCR	2 cut(s)	300, 340
AcyI	GRCGYC	1 cut(s)	216
AdeI	CACNNNGTG	1 cut(s)	461
AfaI	GTAC	4 cut(s)	14, 393, 622, 780
AfiI	CCNNNNNNNGG	6 cut(s)	25, 39, 54, 74, 98, 885
AflIII	ACRYGT	1 cut(s)	309
AgsI	TTSAA	3 cut(s)	446, 514, 553
AjiI	CACGTC	2 cut(s)	123, 298
AluBI	AGCT	2 cut(s)	749, 863
AluI	AGCT	2 cut(s)	749, 863
Alw26I	GTCTC	2 cut(s)	129, 714
AlwI	GGATC	2 cut(s)	446, 536
AoxI	GGCC	7 cut(s)	4, 65, 300, 319, 340, 895, 967
ApaI	GGGCCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	164, 982
AspLEI	GCGC	1 cut(s)	332
AspS9I	GGNCC	5 cut(s)	4, 42, 65, 66, 320
AsuHPI	GGTGA	3 cut(s)	473, 553, 953
AvaII	GGWCC	1 cut(s)	42
BaeGI	GKGCMC	2 cut(s)	33, 69
BalI	TGGCCA	1 cut(s)	302
BanI	GGYRCC	1 cut(s)	28
BanII	GRGCYC	2 cut(s)	69, 678
BarI	GAAGNNNNNNTAC	2 cut(s)	384, 416
BauI	CACGAG	3 cut(s)	255, 677, 732
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	2 cut(s)	151, 994
BccI	CCATC	3 cut(s)	101, 185, 592
BceAI	ACGGC	1 cut(s)	245
BciVI	GTATCC	2 cut(s)	191, 922
BclI	TGATCA	1 cut(s)	768
BcoDI	GTCTC	2 cut(s)	129, 714
BfaI	CTAG	2 cut(s)	782, 936
BfmI	CTRYAG	2 cut(s)	106, 947
BfuI	GTATCC	2 cut(s)	191, 922
BglII	AGATCT	1 cut(s)	609
BisI	GCNGC	8 cut(s)	139, 156, 165, 433, 870, 873, 876, 983
BlsI	GCNGC	8 cut(s)	140, 157, 166, 434, 871, 874, 877, 984
Bme18I	GGWCC	1 cut(s)	42
BmgBI	CACGTC	2 cut(s)	123, 298
BmgT120I	GGNCC	5 cut(s)	4, 42, 65, 66, 320
BmiI	GGNNCC	6 cut(s)	30, 67, 68, 322, 356, 868
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	841
BmuI	ACTGGG	1 cut(s)	33
BoxI	GACNNNNGTC	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	885
BsaBI	GATNNNNATC	1 cut(s)	527
BsaHI	GRCGYC	1 cut(s)	216
BsaJI	CCNNGG	4 cut(s)	156, 204, 234, 261
BsaWI	WCCGGW	2 cut(s)	74, 351
Bsc4I	CCNNNNNNNGG	6 cut(s)	25, 39, 54, 74, 98, 885
Bse118I	RCCGGY	1 cut(s)	897
Bse1I	ACTGG	2 cut(s)	28, 87
Bse3DI	GCAATG	1 cut(s)	903
Bse8I	GATNNNNATC	1 cut(s)	527
BseDI	CCNNGG	4 cut(s)	156, 204, 234, 261
BseGI	GGATG	1 cut(s)	603
BseJI	GATNNNNATC	1 cut(s)	527
BseLI	CCNNNNNNNGG	6 cut(s)	25, 39, 54, 74, 98, 885
BseMI	GCAATG	1 cut(s)	903
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	2 cut(s)	28, 87
BseSI	GKGCMC	2 cut(s)	33, 69
BseXI	GCAGC	2 cut(s)	151, 994
BsgI	GTGCAG	1 cut(s)	438
Bsh1236I	CGCG	2 cut(s)	158, 330
Bsh1285I	CGRYCG	3 cut(s)	115, 146, 627
BshFI	GGCC	7 cut(s)	6, 67, 302, 321, 342, 897, 969
BshNI	GGYRCC	1 cut(s)	28
BsiEI	CGRYCG	3 cut(s)	115, 146, 627
BsiSI	CCGG	5 cut(s)	75, 225, 352, 436, 898
BslI	CCNNNNNNNGG	6 cut(s)	25, 39, 54, 74, 98, 885
BsmAI	GTCTC	2 cut(s)	129, 714
BsmBI	CGTCTC	1 cut(s)	129
BsmI	GAATGC	1 cut(s)	952
BsnI	GGCC	7 cut(s)	6, 67, 302, 321, 342, 897, 969
Bsp120I	GGGCCC	1 cut(s)	65
Bsp1286I	GDGCHC	3 cut(s)	33, 69, 678
Bsp143I	GATC	5 cut(s)	276, 438, 528, 609, 768
BspANI	GGCC	7 cut(s)	6, 67, 302, 321, 342, 897, 969
BspCNI	CTCAG	1 cut(s)	817
BspFNI	CGCG	2 cut(s)	158, 330
BspLI	GGNNCC	6 cut(s)	30, 67, 68, 322, 356, 868
BspPI	GGATC	2 cut(s)	446, 536
BspT107I	GGYRCC	1 cut(s)	28
BsrBI	CCGCTC	1 cut(s)	222
BsrDI	GCAATG	1 cut(s)	903
BsrFI	RCCGGY	1 cut(s)	897
BsrI	ACTGG	2 cut(s)	28, 87
BssAI	RCCGGY	1 cut(s)	897
BssECI	CCNNGG	4 cut(s)	156, 204, 234, 261
BssMI	GATC	5 cut(s)	276, 438, 528, 609, 768
BssNI	GRCGYC	1 cut(s)	216
BssSI	CACGAG	3 cut(s)	255, 677, 732
BssT1I	CCWWGG	2 cut(s)	204, 234
Bst2BI	CACGAG	3 cut(s)	255, 677, 732
Bst4CI	ACNGT	4 cut(s)	116, 147, 617, 625
BstACI	GRCGYC	1 cut(s)	216
BstC8I	GCNNGC	1 cut(s)	65
BstDEI	CTNAG	2 cut(s)	816, 825
BstDSI	CCRYGG	2 cut(s)	156, 261
BstEII	GGTNACC	1 cut(s)	941
BstF5I	GGATG	1 cut(s)	603
BstFNI	CGCG	2 cut(s)	158, 330
BstHHI	GCGC	1 cut(s)	332
BstKTI	GATC	5 cut(s)	279, 441, 531, 612, 771
BstMAI	GTCTC	2 cut(s)	129, 714
BstMBI	GATC	5 cut(s)	276, 438, 528, 609, 768
BstMCI	CGRYCG	3 cut(s)	115, 146, 627
BstMWI	GCNNNNNNNGC	7 cut(s)	64, 117, 161, 164, 327, 869, 875
BstNSI	RCATGY	2 cut(s)	313, 842
BstPAI	GACNNNNGTC	1 cut(s)	47
BstPI	GGTNACC	1 cut(s)	941
BstSFI	CTRYAG	2 cut(s)	106, 947
BstSLI	GKGCMC	2 cut(s)	33, 69
BstUI	CGCG	2 cut(s)	158, 330
BstV1I	GCAGC	2 cut(s)	151, 994
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	2 cut(s)	528, 609
BstYI	RGATCY	2 cut(s)	528, 609
BsuI	GTATCC	2 cut(s)	191, 922
BsuRI	GGCC	7 cut(s)	6, 67, 302, 321, 342, 897, 969
BtgI	CCRYGG	2 cut(s)	156, 261
BtrI	CACGTC	2 cut(s)	123, 298
BtsCI	GGATG	1 cut(s)	603
Cac8I	GCNNGC	1 cut(s)	65
CfoI	GCGC	1 cut(s)	332
Cfr10I	RCCGGY	1 cut(s)	897
Cfr13I	GGNCC	5 cut(s)	4, 42, 65, 66, 320
Cfr42I	CCGCGG	1 cut(s)	159
CseI	GACGC	1 cut(s)	205
Csp6I	GTAC	4 cut(s)	13, 392, 621, 779
CspCI	CAANNNNNGTGG	1 cut(s)	974
CviAII	CATG	7 cut(s)	10, 310, 389, 404, 564, 649, 839
CviQI	GTAC	4 cut(s)	13, 392, 621, 779
DdeI	CTNAG	2 cut(s)	816, 825
DpnI	GATC	5 cut(s)	278, 440, 530, 611, 770
DpnII	GATC	5 cut(s)	276, 438, 528, 609, 768
DraI	TTTAAA	1 cut(s)	505
DraIII	CACNNNGTG	1 cut(s)	461
DrdI	GACNNNNNNGTC	1 cut(s)	215
DseDI	GACNNNNNNGTC	1 cut(s)	215
EaeI	YGGCCR	2 cut(s)	300, 340
EciI	GGCGGA	1 cut(s)	873
Eco130I	CCWWGG	2 cut(s)	204, 234
Eco24I	GRGCYC	2 cut(s)	69, 678
Eco47I	GGWCC	1 cut(s)	42
Eco91I	GGTNACC	1 cut(s)	941
EcoO109I	RGGNCCY	2 cut(s)	66, 320
EcoO65I	GGTNACC	1 cut(s)	941
EcoT14I	CCWWGG	2 cut(s)	204, 234
EcoT38I	GRGCYC	2 cut(s)	69, 678
ErhI	CCWWGG	2 cut(s)	204, 234
Esp3I	CGTCTC	1 cut(s)	129
FaeI	CATG	7 cut(s)	13, 313, 392, 407, 567, 652, 842
FalI	AAGNNNNNCTT	2 cut(s)	624, 656
FatI	CATG	7 cut(s)	9, 309, 388, 403, 563, 648, 838
FauI	CCCGC	2 cut(s)	56, 151
FbaI	TGATCA	1 cut(s)	768
Fnu4HI	GCNGC	8 cut(s)	139, 156, 165, 433, 870, 873, 876, 983
FokI	GGATG	1 cut(s)	610
FriOI	GRGCYC	2 cut(s)	69, 678
Fsp4HI	GCNGC	8 cut(s)	139, 156, 165, 433, 870, 873, 876, 983
FspBI	CTAG	2 cut(s)	782, 936
GlaI	GCGC	1 cut(s)	331
GluI	GCNGC	8 cut(s)	139, 156, 165, 433, 870, 873, 876, 983
GsuI	CTGGAG	1 cut(s)	885
HaeIII	GGCC	7 cut(s)	6, 67, 302, 321, 342, 897, 969
HapII	CCGG	5 cut(s)	75, 225, 352, 436, 898
HgaI	GACGC	1 cut(s)	205
HhaI	GCGC	1 cut(s)	332
Hin1I	GRCGYC	1 cut(s)	216
Hin1II	CATG	7 cut(s)	13, 313, 392, 407, 567, 652, 842
Hin6I	GCGC	1 cut(s)	330
HinP1I	GCGC	1 cut(s)	330
HinfI	GANTC	3 cut(s)	230, 449, 637
HpaII	CCGG	5 cut(s)	75, 225, 352, 436, 898
HphI	GGTGA	3 cut(s)	473, 553, 953
Hpy166II	GTNNAC	2 cut(s)	80, 668
Hpy188I	TCNGA	3 cut(s)	359, 414, 485
Hpy188III	TCNNGA	1 cut(s)	628
Hpy8I	GTNNAC	2 cut(s)	80, 668
Hpy99I	CGWCG	2 cut(s)	53, 854
HpyAV	CCTTC	1 cut(s)	461
HpyCH4III	ACNGT	4 cut(s)	116, 147, 617, 625
HpyCH4IV	ACGT	2 cut(s)	122, 297
HpyCH4V	TGCA	6 cut(s)	88, 120, 455, 563, 903, 982
HpyF10VI	GCNNNNNNNGC	7 cut(s)	64, 117, 161, 164, 327, 869, 875
HpyF3I	CTNAG	2 cut(s)	816, 825
HpySE526I	ACGT	2 cut(s)	122, 297
Hsp92I	GRCGYC	1 cut(s)	216
Hsp92II	CATG	7 cut(s)	13, 313, 392, 407, 567, 652, 842
HspAI	GCGC	1 cut(s)	330
Ksp22I	TGATCA	1 cut(s)	768
KspI	CCGCGG	1 cut(s)	159
Kzo9I	GATC	5 cut(s)	276, 438, 528, 609, 768
LmnI	GCTCC	4 cut(s)	227, 746, 860, 866
Lsp1109I	GCAGC	2 cut(s)	151, 994
LweI	GCATC	1 cut(s)	841
MaeI	CTAG	2 cut(s)	782, 936
MaeII	ACGT	2 cut(s)	122, 297
MaeIII	GTNAC	6 cut(s)	101, 172, 312, 541, 811, 941
MalI	GATC	5 cut(s)	278, 440, 530, 611, 770
MbiI	CCGCTC	1 cut(s)	222
MboI	GATC	5 cut(s)	276, 438, 528, 609, 768
MboII	GAAGA	7 cut(s)	178, 377, 380, 392, 458, 472, 526
MflI	RGATCY	2 cut(s)	528, 609
MhlI	GDGCHC	3 cut(s)	33, 69, 678
MlsI	TGGCCA	1 cut(s)	302
MluCI	AATT	3 cut(s)	489, 553, 772
MluNI	TGGCCA	1 cut(s)	302
MlyI	GAGTC	1 cut(s)	646
MmeI	TCCRAC	2 cut(s)	382, 392
Mox20I	TGGCCA	1 cut(s)	302
MscI	TGGCCA	1 cut(s)	302
MseI	TTAA	2 cut(s)	504, 741
MslI	CAYNNNNRTG	1 cut(s)	837
Msp20I	TGGCCA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	158
MspI	CCGG	5 cut(s)	75, 225, 352, 436, 898
Mva1269I	GAATGC	1 cut(s)	952
MvnI	CGCG	2 cut(s)	158, 330
MwoI	GCNNNNNNNGC	7 cut(s)	64, 117, 161, 164, 327, 869, 875
NdeII	GATC	5 cut(s)	276, 438, 528, 609, 768
NlaIII	CATG	7 cut(s)	13, 313, 392, 407, 567, 652, 842
NlaIV	GGNNCC	6 cut(s)	30, 67, 68, 322, 356, 868
NmuCI	GTSAC	3 cut(s)	541, 811, 941
NspI	RCATGY	2 cut(s)	313, 842
PciI	ACATGT	1 cut(s)	309
PctI	GAATGC	1 cut(s)	952
PfeI	GAWTC	2 cut(s)	230, 449
PkrI	GCNGC	8 cut(s)	140, 157, 166, 434, 871, 874, 877, 984
PleI	GAGTC	1 cut(s)	645
PpsI	GAGTC	1 cut(s)	645
PscI	ACATGT	1 cut(s)	309
PshAI	GACNNNNGTC	1 cut(s)	47
PspEI	GGTNACC	1 cut(s)	941
PspN4I	GGNNCC	6 cut(s)	30, 67, 68, 322, 356, 868
PspOMI	GGGCCC	1 cut(s)	65
PspPI	GGNCC	5 cut(s)	4, 42, 65, 66, 320
PsuI	RGATCY	2 cut(s)	528, 609
RsaI	GTAC	4 cut(s)	14, 393, 622, 780
RsaNI	GTAC	4 cut(s)	13, 392, 621, 779
RseI	CAYNNNNRTG	1 cut(s)	837
SacII	CCGCGG	1 cut(s)	159
SaqAI	TTAA	2 cut(s)	504, 741
SatI	GCNGC	8 cut(s)	139, 156, 165, 433, 870, 873, 876, 983
Sau3AI	GATC	5 cut(s)	276, 438, 528, 609, 768
Sau96I	GGNCC	5 cut(s)	4, 42, 65, 66, 320
SchI	GAGTC	1 cut(s)	646
SduI	GDGCHC	3 cut(s)	33, 69, 678
SetI	ASST	9 cut(s)	47, 125, 300, 463, 751, 865, 935, 948, 1007
SfaNI	GCATC	1 cut(s)	841
SfcI	CTRYAG	2 cut(s)	106, 947
Sfr303I	CCGCGG	1 cut(s)	159
SgrBI	CCGCGG	1 cut(s)	159
SinI	GGWCC	1 cut(s)	42
SmiMI	CAYNNNNRTG	1 cut(s)	837
Sse9I	AATT	3 cut(s)	489, 553, 772
SspI	AATATT	1 cut(s)	807
SspMI	CTAG	2 cut(s)	782, 936
StyI	CCWWGG	2 cut(s)	204, 234
TaaI	ACNGT	4 cut(s)	116, 147, 617, 625
TaiI	ACGT	2 cut(s)	125, 300
TaqI	TCGA	2 cut(s)	585, 835
TasI	AATT	3 cut(s)	489, 553, 772
TatI	WGTACW	3 cut(s)	12, 391, 778
TauI	GCSGC	6 cut(s)	141, 158, 435, 872, 875, 878
TfiI	GAWTC	2 cut(s)	230, 449
Tru1I	TTAA	2 cut(s)	504, 741
Tru9I	TTAA	2 cut(s)	504, 741
TseFI	GTSAC	3 cut(s)	541, 811, 941
TseI	GCWGC	2 cut(s)	164, 982
Tsp45I	GTSAC	3 cut(s)	541, 811, 941
TspDTI	ATGAA	2 cut(s)	139, 392
TspGWI	ACGGA	2 cut(s)	37, 172
VpaK11BI	GGWCC	1 cut(s)	42
XceI	RCATGY	2 cut(s)	313, 842
XspI	CTAG	2 cut(s)	782, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.