Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0001365

Physical Location & Seq

Genomic Coordinates Reverse (-)

9050955 .. 9051340

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0068000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGATAGGTGGGAGATCGGAGATGGGAGGCGGAAGGACAGGCTGGCTGGGACCGGTCCGGTTGGGATCGGAGGTCGGTCCGGTTTGGTTCTGATATCCAGAGTGAGGATGTGTGGGGCTGGGGTGGTGGAGTGGGTGGGTAGTCTTGGCCGGTGGTTCGACGGCGGAGATGGCTCGCAGATGGTTGAGGTCCGACATCGGGGGCGGAGCGGCGAGTATGGTGGCGTGTTGGTTCAGGTGCCTTCCTGGACTGGGCTAACGAGGTATAATAAGTCCCTCCTCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005351 GO:0005402 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008324 GO:0008506 GO:0008515 GO:0008643 GO:0009669 GO:0015075 GO:0015077 GO:0015078 GO:0015144 GO:0015154 GO:0015157 GO:0015291 GO:0015293 GO:0015294 GO:0015295 GO:0015318 GO:0015672 GO:0015766 GO:0015770 GO:0015772 GO:0016020 GO:0022804 GO:0022857 GO:0022890 GO:0034219 GO:0034220 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071944 GO:0098655 GO:0098660 GO:0098662 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MFS_2

Protein Analysis

95

Amino Acids

10.3

Weight (kDa)

10.36

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001365)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22710 AT1G66570 AT1G66570 AT1G66570 AT2G14670 AT5G06170 AT5G43610
fragaria_vesca	FvH4_2g12320 FvH4_2g12320 FvH4_2g12320 FvH4_2g22550 FvH4_2g40110 FvH4_2g40120
malus_domestica	MD05G1040000.v1.1 MD10G1045900.v1.1 MD12G1059700.v1.1
prunus_persica	Prupe.8G052700_v2.0.a1
pyrus_communis	pycom05g03270 pycom10g03210
rosa_chinensis	RchiOBHm_Chr6g0272341 RchiOBHm_Chr6g0300591 RchiOBHm_Chr6g0300631
rosa_laevigata	RLG00000011315 RLG00000011321 RLG00000013682
rosa_multiflora	Rmu_sc0004226.1_g000016 Rmu_sc0004226.1_g000019 Rmu_sc0009379.1_g000001 Rmu_sc0009424.1_g000002 Rmu_sc0022725.1_g000003 Rmu_sc0032937.1_g000001
rosa_roxburghii	Rroxscaffold_7G00167570 Rroxscaffold_7G00167610 Rroxscaffold_7G00196420
rosa_rugosa	Rorug06G0068000 Rorug06G0068100 Rorug06G0297700 Rorug06G0297800 Rorug06G0297800
rosa_samantha	Rh6AG184300 Rh6AG410300 Rh6AG410600 Rh6BG187600 Rh6BG417400 Rh6CG185700 Rh6CG425000 Rh6CG425300 Rh6DG177500 Rh6DG410500
rosa_wichuraiana	Rw6G015890 Rw6G015930 Rw6G035880 Rw6G035920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	238
AccBSI	CCGCTC	1 cut(s)	210
AciI	CCGC	4 cut(s)	31, 165, 205, 210
AclWI	GGATC	1 cut(s)	74
AcoI	YGGCCR	1 cut(s)	148
AfiI	CCNNNNNNNGG	3 cut(s)	105, 199, 252
AgeI	ACCGGT	1 cut(s)	53
AjnI	CCWGG	1 cut(s)	245
AlwI	GGATC	1 cut(s)	74
AoxI	GGCC	1 cut(s)	148
AsiGI	ACCGGT	1 cut(s)	53
AspS9I	GGNCC	4 cut(s)	51, 56, 78, 190
AvaII	GGWCC	4 cut(s)	51, 56, 78, 190
BanI	GGYRCC	1 cut(s)	238
BccI	CCATC	3 cut(s)	17, 164, 175
BceAI	ACGGC	1 cut(s)	178
BciT130I	CCWGG	1 cut(s)	247
BisI	GCNGC	1 cut(s)	211
BlsI	GCNGC	1 cut(s)	212
Bme1390I	CCNGG	1 cut(s)	247
Bme18I	GGWCC	4 cut(s)	51, 56, 78, 190
BmgT120I	GGNCC	4 cut(s)	51, 56, 78, 190
BmiI	GGNNCC	2 cut(s)	52, 240
BmrFI	CCNGG	1 cut(s)	247
BmrI	ACTGGG	1 cut(s)	261
BmuI	ACTGGG	1 cut(s)	261
BsaWI	WCCGGW	3 cut(s)	53, 58, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	105, 199, 252
Bse118I	RCCGGY	2 cut(s)	53, 150
Bse1I	ACTGG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	247
BseGI	GGATG	1 cut(s)	114
BseLI	CCNNNNNNNGG	3 cut(s)	105, 199, 252
BseNI	ACTGG	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	269
BseYI	CCCAGC	2 cut(s)	47, 119
BshFI	GGCC	1 cut(s)	150
BshNI	GGYRCC	1 cut(s)	238
BshTI	ACCGGT	1 cut(s)	53
BsiSI	CCGG	4 cut(s)	54, 59, 81, 151
BslFI	GGGAC	2 cut(s)	64, 259
BslI	CCNNNNNNNGG	3 cut(s)	105, 199, 252
BsmFI	GGGAC	2 cut(s)	64, 259
BsnI	GGCC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	15, 66
BspACI	CCGC	4 cut(s)	31, 165, 205, 210
BspANI	GGCC	1 cut(s)	150
BspLI	GGNNCC	2 cut(s)	52, 240
BspPI	GGATC	1 cut(s)	74
BspT107I	GGYRCC	1 cut(s)	238
BsrBI	CCGCTC	1 cut(s)	210
BsrFI	RCCGGY	2 cut(s)	53, 150
BsrI	ACTGG	1 cut(s)	256
BssAI	RCCGGY	2 cut(s)	53, 150
BssMI	GATC	2 cut(s)	15, 66
Bst2UI	CCWGG	1 cut(s)	247
BstC8I	GCNNGC	2 cut(s)	45, 176
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	18, 69
BstMBI	GATC	2 cut(s)	15, 66
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstNI	CCWGG	1 cut(s)	247
BstSCI	CCNGG	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	114
Cac8I	GCNNGC	2 cut(s)	45, 176
Cfr10I	RCCGGY	2 cut(s)	53, 150
Cfr13I	GGNCC	4 cut(s)	51, 56, 78, 190
CpoI	CGGWCCG	2 cut(s)	56, 78
CspAI	ACCGGT	1 cut(s)	53
CspI	CGGWCCG	2 cut(s)	56, 78
CviJI	RGCY	6 cut(s)	43, 47, 119, 150, 174, 256
CviKI_1	RGCY	6 cut(s)	43, 47, 119, 150, 174, 256
DpnI	GATC	2 cut(s)	17, 68
DpnII	GATC	2 cut(s)	15, 66
EaeI	YGGCCR	1 cut(s)	148
EciI	GGCGGA	3 cut(s)	46, 180, 220
Eco32I	GATATC	1 cut(s)	96
Eco47I	GGWCC	4 cut(s)	51, 56, 78, 190
EcoRII	CCWGG	1 cut(s)	245
EcoRV	GATATC	1 cut(s)	96
FaiI	YATR	2 cut(s)	219, 267
FaqI	GGGAC	2 cut(s)	64, 259
Fnu4HI	GCNGC	1 cut(s)	211
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	211
GsaI	CCCAGC	2 cut(s)	51, 123
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	4 cut(s)	54, 59, 81, 151
HpaII	CCGG	4 cut(s)	54, 59, 81, 151
Hpy188I	TCNGA	4 cut(s)	20, 71, 93, 194
Hpy188III	TCNNGA	1 cut(s)	99
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	28, 252
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	15, 66
LmnI	GCTCC	1 cut(s)	207
MalI	GATC	2 cut(s)	17, 68
MbiI	CCGCTC	1 cut(s)	210
MboI	GATC	2 cut(s)	15, 66
MfeI	CAATTG	1 cut(s)	283
MluCI	AATT	1 cut(s)	283
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	6 cut(s)	21, 65, 99, 181, 255, 287
MspI	CCGG	4 cut(s)	54, 59, 81, 151
MspR9I	CCNGG	1 cut(s)	247
MunI	CAATTG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	247
MwoI	GCNNNNNNNGC	1 cut(s)	171
NdeII	GATC	2 cut(s)	15, 66
NlaIV	GGNNCC	2 cut(s)	52, 240
PfoI	TCCNGGA	1 cut(s)	245
PinAI	ACCGGT	1 cut(s)	53
PkrI	GCNGC	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	245
PspFI	CCCAGC	2 cut(s)	47, 119
PspGI	CCWGG	1 cut(s)	245
PspN4I	GGNNCC	2 cut(s)	52, 240
PspPI	GGNCC	4 cut(s)	51, 56, 78, 190
Rsr2I	CGGWCCG	2 cut(s)	56, 78
RsrII	CGGWCCG	2 cut(s)	56, 78
SatI	GCNGC	1 cut(s)	211
Sau3AI	GATC	2 cut(s)	15, 66
Sau96I	GGNCC	4 cut(s)	51, 56, 78, 190
ScrFI	CCNGG	1 cut(s)	247
SetI	ASST	5 cut(s)	11, 76, 192, 240, 266
SinI	GGWCC	4 cut(s)	51, 56, 78, 190
Sse9I	AATT	1 cut(s)	283
SsiI	CCGC	4 cut(s)	31, 165, 205, 210
StyD4I	CCNGG	1 cut(s)	245
TaqI	TCGA	1 cut(s)	159
TaqII	GACCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	283
TauI	GCSGC	1 cut(s)	213
VpaK11BI	GGWCC	4 cut(s)	51, 56, 78, 190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.