Transcription initiation factor TFIID subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32750 AT3G19040 AT3G19040 |
| fragaria_vesca | FvH4_1g29900 FvH4_1g29900 FvH4_1g29900 FvH4_3g05980 FvH4_3g05980 FvH4_3g05980 |
| malus_domestica | MD04G1047300.v1.1 |
| prunus_persica | Prupe.1G559000_v2.0.a1 |
| pyrus_communis | pycom04g04140 |
| rosa_chinensis | RchiOBHm_Chr3g0492481 RchiOBHm_Chr5g0013481 |
| rosa_laevigata | RLG00000022765 RLG00000029713 RLG00000032019 |
| rosa_multiflora | Rmu_sc0000971.1_g000001 Rmu_sc0020049.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00063080 Rroxscaffold_6G00392250 |
| rosa_rugosa | Rorug01G0101000 Rorug01G0101100 Rorug05G0009500 |
| rosa_samantha | Rh3AG304400 Rh3BG340200 Rh3CG337500 Rh3DG339500 Rh5BG101100 Rh5CG112900 Rh5DG099700 |
| rosa_wichuraiana | Rw3G026820 Rw5G009130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 4 cut(s) | 1448, 1775, 1899, 3470 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 182 |
| Acc36I | ACCTGC | 1 cut(s) | 1630 |
| Acc65I | GGTACC | 1 cut(s) | 564 |
| AccB1I | GGYRCC | 2 cut(s) | 564, 2350 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1493 |
| AccI | GTMKAC | 3 cut(s) | 360, 2511, 5219 |
| AccIII | TCCGGA | 1 cut(s) | 286 |
| AciI | CCGC | 5 cut(s) | 207, 467, 1625, 3855, 5411 |
| AclI | AACGTT | 1 cut(s) | 3058 |
| AcoI | YGGCCR | 2 cut(s) | 1994, 2965 |
| AcyI | GRCGYC | 1 cut(s) | 981 |
| AfaI | GTAC | 6 cut(s) | 566, 2908, 3990, 4128, 4216, 5252 |
| AflII | CTTAAG | 3 cut(s) | 1162, 1421, 2480 |
| AflIII | ACRYGT | 6 cut(s) | 1516, 2233, 2319, 2514, 4476, 4662 |
| AjnI | CCWGG | 8 cut(s) | 781, 1194, 2014, 2041, 2464, 2505, 4077, 5328 |
| AleI | CACNNNNGTG | 1 cut(s) | 862 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 3093, 3125 |
| Alw21I | GWGCWC | 6 cut(s) | 1501, 2162, 2332, 2587, 3805, 5128 |
| Alw44I | GTGCAC | 3 cut(s) | 2158, 2583, 3801 |
| Ama87I | CYCGRG | 1 cut(s) | 82 |
| Aor13HI | TCCGGA | 1 cut(s) | 286 |
| AoxI | GGCC | 9 cut(s) | 779, 1437, 1994, 2947, 2965, 2971, 3283, 4289, 4998 |
| ApaLI | GTGCAC | 3 cut(s) | 2158, 2583, 3801 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 3236, 3268, 3416, 3448, 4562, 4594 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 2010, 2395, 4158 |
| Asp718I | GGTACC | 1 cut(s) | 564 |
| AspA2I | CCTAGG | 1 cut(s) | 2974 |
| AspLEI | GCGC | 2 cut(s) | 2245, 2547 |
| AsuC2I | CCSGG | 3 cut(s) | 2969, 3412, 5261 |
| AvaI | CYCGRG | 1 cut(s) | 82 |
| AvaII | GGWCC | 9 cut(s) | 175, 284, 313, 971, 1324, 1757, 4109, 4919, 5212 |
| AvrII | CCTAGG | 1 cut(s) | 2974 |
| AxyI | CCTNAGG | 1 cut(s) | 506 |
| BaeGI | GKGCMC | 4 cut(s) | 794, 2162, 2587, 3805 |
| BalI | TGGCCA | 1 cut(s) | 1996 |
| BamHI | GGATCC | 1 cut(s) | 1477 |
| BanI | GGYRCC | 2 cut(s) | 564, 2350 |
| BanII | GRGCYC | 2 cut(s) | 1501, 5128 |
| BbsI | GAAGAC | 3 cut(s) | 624, 734, 1377 |
| Bbv12I | GWGCWC | 6 cut(s) | 1501, 2162, 2332, 2587, 3805, 5128 |
| BceAI | ACGGC | 2 cut(s) | 2505, 4304 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 134, 168 |
| BciT130I | CCWGG | 8 cut(s) | 783, 1196, 2016, 2043, 2466, 2507, 4079, 5330 |
| BciVI | GTATCC | 2 cut(s) | 1713, 4278 |
| BclI | TGATCA | 3 cut(s) | 886, 1813, 2188 |
| BcnI | CCSGG | 3 cut(s) | 2969, 3412, 5261 |
| BfmI | CTRYAG | 4 cut(s) | 1634, 2535, 2864, 4278 |
| BfoI | RGCGCY | 1 cut(s) | 2548 |
| BfrI | CTTAAG | 3 cut(s) | 1162, 1421, 2480 |
| BfuAI | ACCTGC | 1 cut(s) | 1630 |
| BfuI | GTATCC | 2 cut(s) | 1713, 4278 |
| BglII | AGATCT | 3 cut(s) | 519, 823, 3976 |
| BlnI | CCTAGG | 1 cut(s) | 2974 |
| BlpI | GCTNAGC | 2 cut(s) | 135, 4410 |
| Bme18I | GGWCC | 9 cut(s) | 175, 284, 313, 971, 1324, 1757, 4109, 4919, 5212 |
| BmeT110I | CYCGRG | 1 cut(s) | 82 |
| BmrI | ACTGGG | 2 cut(s) | 907, 4200 |
| BmsI | GCATC | 3 cut(s) | 106, 439, 4968 |
| BmuI | ACTGGG | 2 cut(s) | 907, 4200 |
| BpiI | GAAGAC | 3 cut(s) | 624, 734, 1377 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 743, 775 |
| BpmI | CTGGAG | 5 cut(s) | 2793, 3789, 3957, 4001, 5267 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 135, 4410 |
| BpuEI | CTTGAG | 6 cut(s) | 960, 1096, 1737, 2330, 3410, 5405 |
| BpuMI | CCSGG | 3 cut(s) | 2969, 3412, 5261 |
| BsaAI | YACGTR | 2 cut(s) | 2582, 3992 |
| BsaBI | GATNNNNATC | 1 cut(s) | 834 |
| BsaHI | GRCGYC | 1 cut(s) | 981 |
| BsaI | GGTCTC | 3 cut(s) | 947, 1029, 4954 |
| BsaWI | WCCGGW | 2 cut(s) | 286, 5187 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 2791, 2821, 3825, 3855, 5064, 5094 |
| Bse118I | RCCGGY | 2 cut(s) | 1092, 3543 |
| Bse21I | CCTNAGG | 1 cut(s) | 506 |
| Bse3DI | GCAATG | 4 cut(s) | 1477, 2238, 2832, 4334 |
| Bse8I | GATNNNNATC | 1 cut(s) | 834 |
| BseAI | TCCGGA | 1 cut(s) | 286 |
| BseBI | CCWGG | 8 cut(s) | 783, 1196, 2016, 2043, 2466, 2507, 4079, 5330 |
| BseJI | GATNNNNATC | 1 cut(s) | 834 |
| BseMI | GCAATG | 4 cut(s) | 1477, 2238, 2832, 4334 |
| BseRI | GAGGAG | 7 cut(s) | 41, 323, 3407, 4598, 4736, 4784, 5088 |
| BseSI | GKGCMC | 4 cut(s) | 794, 2162, 2587, 3805 |
| BseX3I | CGGCCG | 1 cut(s) | 2965 |
| BseYI | CCCAGC | 3 cut(s) | 3188, 3368, 3608 |
| BsgI | GTGCAG | 2 cut(s) | 825, 3699 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2968 |
| BshFI | GGCC | 9 cut(s) | 781, 1439, 1996, 2949, 2967, 2973, 3285, 4291, 5000 |
| BshNI | GGYRCC | 2 cut(s) | 564, 2350 |
| BsiEI | CGRYCG | 1 cut(s) | 2968 |
| BsiHKAI | GWGCWC | 6 cut(s) | 1501, 2162, 2332, 2587, 3805, 5128 |
| BsiHKCI | CYCGRG | 1 cut(s) | 82 |
| BsiSI | CCGG | 8 cut(s) | 287, 1093, 2964, 2968, 3411, 3544, 5188, 5260 |
| BslFI | GGGAC | 4 cut(s) | 932, 1030, 1337, 2244 |
| BsmBI | CGTCTC | 1 cut(s) | 1236 |
| BsmFI | GGGAC | 4 cut(s) | 932, 1030, 1337, 2244 |
| BsmI | GAATGC | 2 cut(s) | 3655, 4570 |
| BsnI | GGCC | 9 cut(s) | 781, 1439, 1996, 2949, 2967, 2973, 3285, 4291, 5000 |
| Bso31I | GGTCTC | 3 cut(s) | 947, 1029, 4954 |
| BsoBI | CYCGRG | 1 cut(s) | 82 |
| Bsp1286I | GDGCHC | 7 cut(s) | 794, 1501, 2162, 2332, 2587, 3805, 5128 |
| Bsp13I | TCCGGA | 1 cut(s) | 286 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 135, 4410 |
| Bsp19I | CCATGG | 1 cut(s) | 2876 |
| BspACI | CCGC | 5 cut(s) | 207, 467, 1625, 3855, 5411 |
| BspANI | GGCC | 9 cut(s) | 781, 1439, 1996, 2949, 2967, 2973, 3285, 4291, 5000 |
| BspEI | TCCGGA | 1 cut(s) | 286 |
| BspHI | TCATGA | 3 cut(s) | 1816, 2448, 4942 |
| BspMAI | CTGCAG | 1 cut(s) | 2539 |
| BspMI | ACCTGC | 1 cut(s) | 1630 |
| BspQI | GCTCTTC | 1 cut(s) | 2535 |
| BspT107I | GGYRCC | 2 cut(s) | 564, 2350 |
| BspTI | CTTAAG | 3 cut(s) | 1162, 1421, 2480 |
| BspTNI | GGTCTC | 3 cut(s) | 947, 1029, 4954 |
| BsrDI | GCAATG | 4 cut(s) | 1477, 2238, 2832, 4334 |
| BsrFI | RCCGGY | 2 cut(s) | 1092, 3543 |
| BssAI | RCCGGY | 2 cut(s) | 1092, 3543 |
| BssNI | GRCGYC | 1 cut(s) | 981 |
| BssT1I | CCWWGG | 6 cut(s) | 984, 1997, 2876, 2950, 2974, 4105 |
| Bst2UI | CCWGG | 8 cut(s) | 783, 1196, 2016, 2043, 2466, 2507, 4079, 5330 |
| Bst4CI | ACNGT | 8 cut(s) | 560, 1412, 1828, 1885, 2626, 4069, 4204, 4372 |
| Bst6I | CTCTTC | 6 cut(s) | 417, 621, 2535, 2727, 4554, 4634 |
| BstACI | GRCGYC | 1 cut(s) | 981 |
| BstAFI | CTTAAG | 3 cut(s) | 1162, 1421, 2480 |
| BstBAI | YACGTR | 2 cut(s) | 2582, 3992 |
| BstC8I | GCNNGC | 5 cut(s) | 153, 2756, 2760, 3867, 5419 |
| BstDSI | CCRYGG | 2 cut(s) | 194, 2876 |
| BstEII | GGTNACC | 3 cut(s) | 189, 3242, 3422 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1752 |
| BstH2I | RGCGCY | 1 cut(s) | 2548 |
| BstHHI | GCGC | 2 cut(s) | 2245, 2547 |
| BstMCI | CGRYCG | 1 cut(s) | 2968 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 542, 764, 778, 1788, 2500, 3527, 3530, 5300 |
| BstNI | CCWGG | 8 cut(s) | 783, 1196, 2016, 2043, 2466, 2507, 4079, 5330 |
| BstPI | GGTNACC | 3 cut(s) | 189, 3242, 3422 |
| BstSFI | CTRYAG | 4 cut(s) | 1634, 2535, 2864, 4278 |
| BstSLI | GKGCMC | 4 cut(s) | 794, 2162, 2587, 3805 |
| BstV2I | GAAGAC | 3 cut(s) | 624, 734, 1377 |
| BstX2I | RGATCY | 9 cut(s) | 519, 823, 835, 1298, 1477, 2198, 2476, 3976, 4180 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1202, 3025 |
| BstYI | RGATCY | 9 cut(s) | 519, 823, 835, 1298, 1477, 2198, 2476, 3976, 4180 |
| BstZI | CGGCCG | 1 cut(s) | 2965 |
| Bsu36I | CCTNAGG | 1 cut(s) | 506 |
| BsuI | GTATCC | 2 cut(s) | 1713, 4278 |
| BsuRI | GGCC | 9 cut(s) | 781, 1439, 1996, 2949, 2967, 2973, 3285, 4291, 5000 |
| BtgI | CCRYGG | 2 cut(s) | 194, 2876 |
| BtsI | GCAGTG | 2 cut(s) | 3030, 3319 |
| BtsIMutI | CAGTG | 9 cut(s) | 1417, 1890, 1955, 2136, 3030, 3319, 4200, 4296, 5166 |
| BveI | ACCTGC | 1 cut(s) | 1630 |
| Cac8I | GCNNGC | 5 cut(s) | 153, 2756, 2760, 3867, 5419 |
| CciI | TCATGA | 3 cut(s) | 1816, 2448, 4942 |
| CfoI | GCGC | 2 cut(s) | 2245, 2547 |
| Cfr10I | RCCGGY | 2 cut(s) | 1092, 3543 |
| CseI | GACGC | 5 cut(s) | 989, 1253, 2024, 2415, 5051 |
| CsiI | ACCWGGT | 2 cut(s) | 4077, 5328 |
| Csp6I | GTAC | 6 cut(s) | 565, 2907, 3989, 4127, 4215, 5251 |
| CviQI | GTAC | 6 cut(s) | 565, 2907, 3989, 4127, 4215, 5251 |
| DraI | TTTAAA | 2 cut(s) | 1461, 3709 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 182 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 182 |
| EaeI | YGGCCR | 2 cut(s) | 1994, 2965 |
| EagI | CGGCCG | 1 cut(s) | 2965 |
| Eam1104I | CTCTTC | 6 cut(s) | 417, 621, 2535, 2727, 4554, 4634 |
| EarI | CTCTTC | 6 cut(s) | 417, 621, 2535, 2727, 4554, 4634 |
| Ecl136II | GAGCTC | 2 cut(s) | 1499, 5126 |
| EclXI | CGGCCG | 1 cut(s) | 2965 |
| Eco130I | CCWWGG | 6 cut(s) | 984, 1997, 2876, 2950, 2974, 4105 |
| Eco147I | AGGCCT | 1 cut(s) | 3285 |
| Eco24I | GRGCYC | 2 cut(s) | 1501, 5128 |
| Eco31I | GGTCTC | 3 cut(s) | 947, 1029, 4954 |
| Eco32I | GATATC | 2 cut(s) | 4059, 4675 |
| Eco47I | GGWCC | 9 cut(s) | 175, 284, 313, 971, 1324, 1757, 4109, 4919, 5212 |
| Eco52I | CGGCCG | 1 cut(s) | 2965 |
| Eco53kI | GAGCTC | 2 cut(s) | 1499, 5126 |
| Eco81I | CCTNAGG | 1 cut(s) | 506 |
| Eco88I | CYCGRG | 1 cut(s) | 82 |
| Eco91I | GGTNACC | 3 cut(s) | 189, 3242, 3422 |
| EcoICRI | GAGCTC | 2 cut(s) | 1499, 5126 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1752 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1324, 2971 |
| EcoO65I | GGTNACC | 3 cut(s) | 189, 3242, 3422 |
| EcoRI | GAATTC | 4 cut(s) | 1573, 3358, 3773, 4856 |
| EcoRII | CCWGG | 8 cut(s) | 781, 1194, 2014, 2041, 2464, 2505, 4077, 5328 |
| EcoRV | GATATC | 2 cut(s) | 4059, 4675 |
| EcoT14I | CCWWGG | 6 cut(s) | 984, 1997, 2876, 2950, 2974, 4105 |
| EcoT38I | GRGCYC | 2 cut(s) | 1501, 5128 |
| ErhI | CCWWGG | 6 cut(s) | 984, 1997, 2876, 2950, 2974, 4105 |
| Esp3I | CGTCTC | 1 cut(s) | 1236 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 2751, 2783, 2910, 2942, 3948, 3980, 4788, 4820 |
| FaqI | GGGAC | 4 cut(s) | 932, 1030, 1337, 2244 |
| FauNDI | CATATG | 2 cut(s) | 3912, 5376 |
| FbaI | TGATCA | 3 cut(s) | 886, 1813, 2188 |
| FblI | GTMKAC | 3 cut(s) | 360, 2511, 5219 |
| FriOI | GRGCYC | 2 cut(s) | 1501, 5128 |
| GlaI | GCGC | 2 cut(s) | 2244, 2546 |
| GsaI | CCCAGC | 3 cut(s) | 3192, 3372, 3612 |
| GsuI | CTGGAG | 5 cut(s) | 2793, 3789, 3957, 4001, 5267 |
| HaeII | RGCGCY | 1 cut(s) | 2548 |
| HaeIII | GGCC | 9 cut(s) | 781, 1439, 1996, 2949, 2967, 2973, 3285, 4291, 5000 |
| HapII | CCGG | 8 cut(s) | 287, 1093, 2964, 2968, 3411, 3544, 5188, 5260 |
| HgaI | GACGC | 5 cut(s) | 989, 1253, 2024, 2415, 5051 |
| HhaI | GCGC | 2 cut(s) | 2245, 2547 |
| Hin1I | GRCGYC | 1 cut(s) | 981 |
| Hin6I | GCGC | 2 cut(s) | 2243, 2545 |
| HinP1I | GCGC | 2 cut(s) | 2243, 2545 |
| HincII | GTYRAC | 1 cut(s) | 5220 |
| HindII | GTYRAC | 1 cut(s) | 5220 |
| HpaII | CCGG | 8 cut(s) | 287, 1093, 2964, 2968, 3411, 3544, 5188, 5260 |
| Hpy166II | GTNNAC | 9 cut(s) | 361, 416, 1415, 2039, 2160, 2512, 2585, 3803, 5220 |
| Hpy8I | GTNNAC | 9 cut(s) | 361, 416, 1415, 2039, 2160, 2512, 2585, 3803, 5220 |
| HpyCH4III | ACNGT | 8 cut(s) | 560, 1412, 1828, 1885, 2626, 4069, 4204, 4372 |
| HpyCH4IV | ACGT | 4 cut(s) | 2581, 3058, 3991, 4866 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 542, 764, 778, 1788, 2500, 3527, 3530, 5300 |
| HpySE526I | ACGT | 4 cut(s) | 2581, 3058, 3991, 4866 |
| Hsp92I | GRCGYC | 1 cut(s) | 981 |
| HspAI | GCGC | 2 cut(s) | 2243, 2545 |
| KflI | GGGWCCC | 1 cut(s) | 1324 |
| Kpn2I | TCCGGA | 1 cut(s) | 286 |
| KpnI | GGTACC | 1 cut(s) | 568 |
| Ksp22I | TGATCA | 3 cut(s) | 886, 1813, 2188 |
| LguI | GCTCTTC | 1 cut(s) | 2535 |
| LweI | GCATC | 3 cut(s) | 106, 439, 4968 |
| MabI | ACCWGGT | 2 cut(s) | 4077, 5328 |
| MaeII | ACGT | 4 cut(s) | 2581, 3058, 3991, 4866 |
| MfeI | CAATTG | 3 cut(s) | 726, 3720, 4898 |
| MflI | RGATCY | 9 cut(s) | 519, 823, 835, 1298, 1477, 2198, 2476, 3976, 4180 |
| MhlI | GDGCHC | 7 cut(s) | 794, 1501, 2162, 2332, 2587, 3805, 5128 |
| MlsI | TGGCCA | 1 cut(s) | 1996 |
| MluNI | TGGCCA | 1 cut(s) | 1996 |
| MlyI | GAGTC | 8 cut(s) | 74, 761, 1052, 1064, 2866, 4146, 4321, 4931 |
| MmeI | TCCRAC | 2 cut(s) | 1077, 3720 |
| Mox20I | TGGCCA | 1 cut(s) | 1996 |
| MroI | TCCGGA | 1 cut(s) | 286 |
| MroXI | GAANNNNTTC | 3 cut(s) | 2010, 2395, 4158 |
| MscI | TGGCCA | 1 cut(s) | 1996 |
| MslI | CAYNNNNRTG | 2 cut(s) | 862, 2141 |
| Msp20I | TGGCCA | 1 cut(s) | 1996 |
| MspA1I | CMGCKG | 4 cut(s) | 469, 1564, 3524, 3533 |
| MspCI | CTTAAG | 3 cut(s) | 1162, 1421, 2480 |
| MspI | CCGG | 8 cut(s) | 287, 1093, 2964, 2968, 3411, 3544, 5188, 5260 |
| MunI | CAATTG | 3 cut(s) | 726, 3720, 4898 |
| Mva1269I | GAATGC | 2 cut(s) | 3655, 4570 |
| MvaI | CCWGG | 8 cut(s) | 783, 1196, 2016, 2043, 2466, 2507, 4079, 5330 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 542, 764, 778, 1788, 2500, 3527, 3530, 5300 |
| NciI | CCSGG | 3 cut(s) | 2969, 3412, 5261 |
| NcoI | CCATGG | 1 cut(s) | 2876 |
| NdeI | CATATG | 2 cut(s) | 3912, 5376 |
| NmuCI | GTSAC | 6 cut(s) | 855, 938, 3242, 3422, 4171, 5369 |
| OliI | CACNNNNGTG | 1 cut(s) | 862 |
| PaeI | GCATGC | 1 cut(s) | 2758 |
| PagI | TCATGA | 3 cut(s) | 1816, 2448, 4942 |
| PceI | AGGCCT | 1 cut(s) | 3285 |
| PciI | ACATGT | 6 cut(s) | 1516, 2233, 2319, 2514, 4476, 4662 |
| PciSI | GCTCTTC | 1 cut(s) | 2535 |
| PctI | GAATGC | 2 cut(s) | 3655, 4570 |
| PdmI | GAANNNNTTC | 3 cut(s) | 2010, 2395, 4158 |
| PflFI | GACNNNGTC | 1 cut(s) | 3948 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1493 |
| PfoI | TCCNGGA | 1 cut(s) | 2464 |
| PleI | GAGTC | 8 cut(s) | 74, 760, 1051, 1063, 2866, 4145, 4320, 4931 |
| PpsI | GAGTC | 8 cut(s) | 74, 760, 1051, 1063, 2866, 4145, 4320, 4931 |
| Ppu21I | YACGTR | 2 cut(s) | 2582, 3992 |
| PpuMI | RGGWCCY | 1 cut(s) | 1324 |
| PscI | ACATGT | 6 cut(s) | 1516, 2233, 2319, 2514, 4476, 4662 |
| PsiI | TTATAA | 4 cut(s) | 1448, 1775, 1899, 3470 |
| Psp124BI | GAGCTC | 2 cut(s) | 1501, 5128 |
| Psp1406I | AACGTT | 1 cut(s) | 3058 |
| Psp5II | RGGWCCY | 1 cut(s) | 1324 |
| Psp6I | CCWGG | 8 cut(s) | 781, 1194, 2014, 2041, 2464, 2505, 4077, 5328 |
| PspEI | GGTNACC | 3 cut(s) | 189, 3242, 3422 |
| PspFI | CCCAGC | 3 cut(s) | 3188, 3368, 3608 |
| PspGI | CCWGG | 8 cut(s) | 781, 1194, 2014, 2041, 2464, 2505, 4077, 5328 |
| PspPPI | RGGWCCY | 1 cut(s) | 1324 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 3043, 3075 |
| PstI | CTGCAG | 1 cut(s) | 2539 |
| PsuI | RGATCY | 9 cut(s) | 519, 823, 835, 1298, 1477, 2198, 2476, 3976, 4180 |
| PsyI | GACNNNGTC | 1 cut(s) | 3948 |
| PvuII | CAGCTG | 3 cut(s) | 1564, 3524, 3533 |
| RsaI | GTAC | 6 cut(s) | 566, 2908, 3990, 4128, 4216, 5252 |
| RsaNI | GTAC | 6 cut(s) | 565, 2907, 3989, 4127, 4215, 5251 |
| RseI | CAYNNNNRTG | 2 cut(s) | 862, 2141 |
| SacI | GAGCTC | 2 cut(s) | 1501, 5128 |
| SalI | GTCGAC | 1 cut(s) | 5218 |
| SapI | GCTCTTC | 1 cut(s) | 2535 |
| SchI | GAGTC | 8 cut(s) | 74, 761, 1052, 1064, 2866, 4146, 4321, 4931 |
| SduI | GDGCHC | 7 cut(s) | 794, 1501, 2162, 2332, 2587, 3805, 5128 |
| SexAI | ACCWGGT | 2 cut(s) | 4077, 5328 |
| SfaNI | GCATC | 3 cut(s) | 106, 439, 4968 |
| SfcI | CTRYAG | 4 cut(s) | 1634, 2535, 2864, 4278 |
| SinI | GGWCC | 9 cut(s) | 175, 284, 313, 971, 1324, 1757, 4109, 4919, 5212 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 862, 2141 |
| SmlI | CTYRAG | 9 cut(s) | 975, 1111, 1162, 1421, 1752, 2309, 2480, 3389, 5384 |
| SmoI | CTYRAG | 9 cut(s) | 975, 1111, 1162, 1421, 1752, 2309, 2480, 3389, 5384 |
| SphI | GCATGC | 1 cut(s) | 2758 |
| SseBI | AGGCCT | 1 cut(s) | 3285 |
| SsiI | CCGC | 5 cut(s) | 207, 467, 1625, 3855, 5411 |
| SspI | AATATT | 1 cut(s) | 1033 |
| SstI | GAGCTC | 2 cut(s) | 1501, 5128 |
| StuI | AGGCCT | 1 cut(s) | 3285 |
| StyI | CCWWGG | 6 cut(s) | 984, 1997, 2876, 2950, 2974, 4105 |
| TaaI | ACNGT | 8 cut(s) | 560, 1412, 1828, 1885, 2626, 4069, 4204, 4372 |
| TaiI | ACGT | 4 cut(s) | 2584, 3061, 3994, 4869 |
| TatI | WGTACW | 2 cut(s) | 4214, 5250 |
| TscAI | CASTG | 9 cut(s) | 1417, 1890, 1955, 2143, 3030, 3319, 4207, 4303, 5166 |
| TseFI | GTSAC | 6 cut(s) | 855, 938, 3242, 3422, 4171, 5369 |
| Tsp45I | GTSAC | 6 cut(s) | 855, 938, 3242, 3422, 4171, 5369 |
| TspGWI | ACGGA | 1 cut(s) | 2519 |
| TspRI | CASTG | 9 cut(s) | 1417, 1890, 1955, 2143, 3030, 3319, 4207, 4303, 5166 |
| Tth111I | GACNNNGTC | 1 cut(s) | 3948 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1493 |
| Vha464I | CTTAAG | 3 cut(s) | 1162, 1421, 2480 |
| VneI | GTGCAC | 3 cut(s) | 2158, 2583, 3801 |
| VpaK11BI | GGWCC | 9 cut(s) | 175, 284, 313, 971, 1324, 1757, 4109, 4919, 5212 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1752 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1695 |
| XmaJI | CCTAGG | 1 cut(s) | 2974 |
| XmiI | GTMKAC | 3 cut(s) | 360, 2511, 5219 |
| XmnI | GAANNNNTTC | 3 cut(s) | 2010, 2395, 4158 |