Rh5CG112900

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0004130
Physical Location & Seq
Forward (+)
9258686 .. 9262866
4181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG112900.1

Sequence Viewer

Length: 3843 bp
ATGGGTTGTAATTCAGATGGTGGGTCCCAAGTGTTTACGGGTGAGGATGATGATGAAGAATATGAGGAGGATGGTAGGGGTAGTCGGTTTCTTGGGTTTATGTTTGGTAATGTGGATGACTCGGGTGATCTTGATGTTGATTACCTTGATGAGGATGCAAAGAAGCATTTTGCTGTACTTTCCGAGAAGCTTGGTCCTGCTTTCACGGATATGGACATGTCAGTGAAGTTACCAAGGACATTAAGCGATGCGGTGGAGCAAGATTATGATGAGAAGGCTGAGAATGCTGTGAATTATTTTGACATTGATGAGGATTTTGAGGGTCCGGAGATTGAAGGTGCTACTGAGGAGGACCATCTTTTGCCGAGAGATGAATACCTTTCTGCTAAAGTTTCAGTGGATAAAATTCGAGAAGTGGAACATGAGGTGGTTGAAAATTATGATGAGGAGAGTGAACAGGAAAAGGAACAAGAGGTGGTTGAACAGGATGTTAGAATTTCCCCACCGCTGCCAGTTCTATGCATAGAAGATGGAGAGGTGATCCTAAGATTCTCAGAAATCTTTGGCACTCATGTAAAGGAGGCAGTTAAAAGAAACCATAGGTACTCTGTTTGCAAAAGTATGCATAAATCCATGGATTTTACGGATATTGTTGAAGAGGATGAAGAGGCATTTCTCAAAGGAACTAGTGAAGGATTTACAGCTTTGAAAGAAGCTGATGGAGTGAAACATAACATCTCAGAATTGAATGATGATGATTTGGAATTTGCAAAATTTCGTGTTCACAAAGAGGCTACCTCATTTGCTGTGCTGGATGGGCCAGGAAAGGGCACGTACCTTTTTGCGGCACCAATGAAAGAAGATCTAGATGTGGATCTTTGTGTGGAAAGGCAGTCACCTTCGTGTCCTACATTTTACCCTCTTGATCAACAAGACTGGGAAGATGGAATTATTTGGGACAAGTCTCCTGTAATGAGTGACAATGCTGTTGAGAGTTGTGAAATGTCAGGACCTGACCACACCTCAGTTGATAGTGAAACAGAATCTGATAGTGGGTCGCAAAATATTCAGTTAGAGTCCCAAAAAGAGTCTGATGAGAAAAGGCATGATTTTATGCTATTTAGCCGGTCTAGTCTGTTGGAGCCTTTTGGCTCAAGAAATTCAGCAGGACCTTTATGTGTTCCTGTATCGGAAAGCAGATACCATCCCCAACTCTTAAGGCTAGAATCTCGATTTGAAGTGGATGACCAGGCAAATGGTAGAATGGAGAATGTCGACCAGAAGCTTCATAAGAGAGATGCTGTGAGGCAATTCAGCAAGCTTACCTCACATAACAGAGACATGCTGGAAGGATCATGGTTAGACCAGATCATATGGGACCCAAACATACGTATTAGGAAGCCAAAGCTTATCCTTGATCTTGAAGATGAGCAAATGCTCTTTGAGATTTTGGATAACAAGGATAGTGAACATCTTAAGCTTCATTCAGGGGCCACGATTGTAACTACCCCTCTAAAGTCAAGCAATGAGGATTCTTTGGATTTGCCCAGTCATAGAGCTCAGTTTTGTTGGCGATATGTAGCTAATGACAAGCACTATGCAAACAGGAAAACATCTTATCAACTACAATCGAATTCTAAAAGACGCACTGCTCAAAGCATAAAGATTTATCACTCACAACCTGCACTTCGGCTACAGACTATGAAGCTGAAGTTAAGCAATAAGGAGGTTGCTAATTTTCATCGACCAAAGGCTTTATGGTATCCCTGCGACGATGAAAAAGCTGTAAAAGAACTAGGGAAGCTGCCTACTCAAGGACCAATGAAAATTATTATAAAGAGCTTGGGTGGCAAAGGCAGTAAGCTTCATGTTGATCATGAGGAAACTGTCTTTTCTGTCAAAGCAAAAGCTTCAAAAAAGCTAGATTTTAAGTCATCTGAAACAGTGAGGATGTTTTATAAAGGGAAGGAACTTGAAGATGATAAATCTCTAGCTGCTCAAAATGTTCAGCGGAACTCTTTGCTTTATCTGGTCCGTACAAATATATATTTGTTGCCAAGGTCGCAAAAACTTCCTGGTGAGAATAAATCGTTGCGTCCTCCTGGAGCATTTAAGAAGAAATCTGACCTTTCAGCTAAAGATGGTCATGTCTTTCTAGTAGAGTATTGTGAGGAAAGACCTTTACTTCTGAGCAATATTGGTATGGGTGCAAGATTGTGCACTTATTATCAAAATTCAGCCCCAGATGATCAAAATGGATCTTTGTTGCACAATGAAAACAGCAGCTTGGGTCATGTCATTTCGCTAAACCCTGCTGATAAATCACCTTTTCTTGGAGATATAAAAGCTGGTTGCTGTCAGTCATCTCTTGAGACAAACATGTATAGAGCACCTCTTTTTTCTCATAAGGTGCCATCAACTGATTATCTGTTAGTTCGTTCTGCAAAGGGAAAGCTTTCAATTAGACGCATTGACAAGCTTAATGTTGTAGGGCAACAGGAACCTCTCATGAAGGTAATGTCTCCTGGAACTAAGAATCTGAAAAATTACATGCTTAACAGGCTCCTAGTCTACATGTGCCGTGAGTTCCGTGCTGCCGAAGAGCGCCATGTCCCTCCTTGTATTTGTGTAGATGAGTTACGTGCACAATTTCCTTACCTATCTGATCCCTTTATCAAAAACAAAGTGAAGGAACTTGTGAATTTGCCGAAGGGATCAAGTGGACATTGGGTTAAGAAGAGCAATTTCACGATTTTCTCAGAGGATGAATTAAGAAATATGGTGAAACCAGAAGAGGTGTGTGCCTATGAAAGCATGCAAGCTGGTCTTTATCGGCTCAAACATTTACGAATTACTCAAACTTATCCTTCTGTCATGTCATCTGCAATGAGTCATCTCCACGACGAAGGTAATACTCTGGCTGCTGCATGTCACATCAAAAGGGAACTACAGACGACTCCATGGAATTTGAGTTGCAATTTTGTAGCCTGTACAATGGGAAAAGAAAATATTGAGCGTTTAGAAATATCTGGCCTTGGTGATCCATCTGGCCGGGGACTAGGTTTTAGTTATGTTCGCGCTGCTCCAAAATCATCAATGCCCAATGCAGTGGGAAAGAAAAACTGTGCTACTGGTAGAGGACGTTCAGATTCTTTCAGCAGGGAGAGGTGTCAGGAAATTTGGGAACAGCAAGTTCATTGTCTTTCAGCAGTAGGCAGTGATGAGAATGAGAGTGATTCTGAAGGAAATTATAGTGATCTGGATTCCTTTGCTGGGAGTTTAGAAAATCTGCTTGATGCAGAAGAATGTGAAAAGGGGTTAGGGGGTGACCATGAATTTGAGTGTGACAAAGAAGACGACGTTAAAGGGCTCGTAATGAGAAGGCTCCTGTCCTTGAATCCAGCAGAGGAAAGTGAAGATGAAGCAGCTGAAGCAGCTGAGTTATGCCGGTTGCTTATGGGTGATGAAACTGAGAGGAAGAAAAAGAAAACAACAAGAGTTTTGGAGGAAGCTAGGCTGCTTCCAGGCTCACGAACAAGTTTTGCTTTTGAGAATGCAGATAGGGTAAAGCAAAACATTGTTACAGCACAATTTGATGGTTCCTATACTCCTAAAGAGAATCCAATTGGAGACAGCAAAGTGATGGAAAATCTTCTTAAAAGAAGCAAGACTGGAGAATTAGAAGGGATGAGAGAGAATGGTACTACACCTATGCATAAGAAACTAAACGCATCAGGAAATGGTGTCAAGATGTTTGGTGAGAAGAAGCCAGTAAGAGAGAATTTTGTCTGTGGAGCATGTGGTCAGCATGGACACATGAGGACAAACAAGAACTGCCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

1280

Amino Acids

144.37

Weight (kDa)

5.3

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP-binding PF09247 18 - 62 1.3e-09 TATA box-binding protein binding
DUF3591 PF12157 528 - 1050 4.7e-100 Protein of unknown function (DUF3591)
Rad60-SLD PF11976 608 - 675 4.5e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 610 - 680 4.3e-08 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1835, 1959
Acc36I ACCTGC 1 cut(s) 1690
AccB1I GGYRCC 2 cut(s) 847, 2410
AccI GTMKAC 2 cut(s) 1275, 2571
AccII CGCG 1 cut(s) 3078
AccIII TCCGGA 1 cut(s) 325
AciI CCGC 4 cut(s) 251, 506, 845, 2011
AclWI GGATC 7 cut(s) 535, 882, 1360, 2266, 2660, 2722, 3035
AcoI YGGCCR 1 cut(s) 3049
AcuI CTGAAG 3 cut(s) 1730, 3261, 3450
AfaI GTAC 6 cut(s) 177, 605, 836, 2038, 2992, 3703
AfiI CCNNNNNNNGG 6 cut(s) 151, 827, 844, 1814, 2333, 3273
AflII CTTAAG 2 cut(s) 1216, 1475
AflIII ACRYGT 3 cut(s) 216, 2379, 2574
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 6 cut(s) 820, 1248, 2074, 2101, 2524, 3523
AleI CACNNNNGTG 1 cut(s) 901
Alw21I GWGCWC 4 cut(s) 1561, 2222, 2392, 2647
Alw26I GTCTC 5 cut(s) 969, 1332, 2366, 2526, 3624
Alw44I GTGCAC 2 cut(s) 2218, 2643
AlwI GGATC 7 cut(s) 535, 882, 1360, 2266, 2660, 2722, 3035
AlwNI CAGNNNCTG 2 cut(s) 1013, 1046
Ama87I CYCGRG 1 cut(s) 121
Aor13HI TCCGGA 1 cut(s) 325
AoxI GGCC 4 cut(s) 818, 1491, 3031, 3049
ApaLI GTGCAC 2 cut(s) 2218, 2643
ArsI GACNNNNNNTTYG 2 cut(s) 3320, 3352
Asp700I GAANNNNTTC 2 cut(s) 2455, 3651
AspLEI GCGC 2 cut(s) 2607, 3080
AsuC2I CCSGG 1 cut(s) 3053
AvaI CYCGRG 1 cut(s) 121
AvaII GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1169, 1378, 1817, 2032
BaeGI GKGCMC 3 cut(s) 833, 2222, 2647
BanI GGYRCC 2 cut(s) 847, 2410
BanII GRGCYC 2 cut(s) 1561, 3372
BbsI GAAGAC 1 cut(s) 3360
Bbv12I GWGCWC 4 cut(s) 1561, 2222, 2392, 2647
BceAI ACGGC 1 cut(s) 2565
BciT130I CCWGG 6 cut(s) 822, 1250, 2076, 2103, 2526, 3525
BciVI GTATCC 1 cut(s) 1773
BclI TGATCA 3 cut(s) 925, 1873, 2248
BcnI CCSGG 1 cut(s) 3053
BcoDI GTCTC 5 cut(s) 969, 1332, 2366, 2526, 3624
BcuI ACTAGT 1 cut(s) 686
BfmI CTRYAG 2 cut(s) 1694, 2948
BfoI RGCGCY 1 cut(s) 2608
BfrI CTTAAG 2 cut(s) 1216, 1475
BfuAI ACCTGC 1 cut(s) 1690
BfuI GTATCC 1 cut(s) 1773
BglII AGATCT 1 cut(s) 862
Bme1390I CCNGG 7 cut(s) 822, 1250, 2076, 2103, 2526, 3053, 3525
Bme18I GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1169, 1378, 1817, 2032
BmeT110I CYCGRG 1 cut(s) 121
BmrFI CCNGG 7 cut(s) 822, 1250, 2076, 2103, 2526, 3053, 3525
BmrI ACTGGG 2 cut(s) 946, 1542
BmsI GCATC 5 cut(s) 145, 238, 1288, 3286, 3740
BmuI ACTGGG 2 cut(s) 946, 1542
BpiI GAAGAC 1 cut(s) 3360
BplI GAGNNNNNCTC 2 cut(s) 782, 814
BpmI CTGGAG 2 cut(s) 2124, 3693
BpuEI CTTGAG 3 cut(s) 1138, 1797, 2390
BpuMI CCSGG 1 cut(s) 3053
BsaAI YACGTR 3 cut(s) 834, 1391, 2642
BsaBI GATNNNNATC 1 cut(s) 873
BsaJI CCNNGG 6 cut(s) 233, 633, 2057, 2960, 3034, 3052
BsaWI WCCGGW 1 cut(s) 325
Bsc4I CCNNNNNNNGG 6 cut(s) 151, 827, 844, 1814, 2333, 3273
Bse118I RCCGGY 2 cut(s) 1125, 3447
Bse1I ACTGG 6 cut(s) 512, 941, 1548, 3136, 3676, 3770
Bse3DI GCAATG 2 cut(s) 1531, 2892
Bse8I GATNNNNATC 1 cut(s) 873
BseAI TCCGGA 1 cut(s) 325
BseBI CCWGG 6 cut(s) 822, 1250, 2076, 2103, 2526, 3525
BseDI CCNNGG 6 cut(s) 233, 633, 2057, 2960, 3034, 3052
BseJI GATNNNNATC 1 cut(s) 873
BseLI CCNNNNNNNGG 6 cut(s) 151, 827, 844, 1814, 2333, 3273
BseMI GCAATG 2 cut(s) 1531, 2892
BseNI ACTGG 6 cut(s) 512, 941, 1548, 3136, 3676, 3770
BseRI GAGGAG 3 cut(s) 80, 362, 461
BseSI GKGCMC 3 cut(s) 833, 2222, 2647
BseYI CCCAGC 1 cut(s) 3272
BsgI GTGCAG 1 cut(s) 1668
Bsh1236I CGCG 1 cut(s) 3078
BshFI GGCC 4 cut(s) 820, 1493, 3033, 3051
BshNI GGYRCC 2 cut(s) 847, 2410
BsiHKAI GWGCWC 4 cut(s) 1561, 2222, 2392, 2647
BsiHKCI CYCGRG 1 cut(s) 121
BsiSI CCGG 4 cut(s) 326, 1126, 3052, 3448
BslFI GGGAC 6 cut(s) 10, 971, 1063, 1391, 2597, 3069
BslI CCNNNNNNNGG 6 cut(s) 151, 827, 844, 1814, 2333, 3273
BsmAI GTCTC 5 cut(s) 969, 1332, 2366, 2526, 3624
BsmFI GGGAC 6 cut(s) 10, 971, 1063, 1391, 2597, 3069
BsmI GAATGC 2 cut(s) 289, 3559
BsnI GGCC 4 cut(s) 820, 1493, 3033, 3051
BsoBI CYCGRG 1 cut(s) 121
Bsp1286I GDGCHC 6 cut(s) 833, 1561, 2222, 2392, 2647, 3372
Bsp13I TCCGGA 1 cut(s) 325
Bsp1407I TGTACA 1 cut(s) 2990
Bsp19I CCATGG 2 cut(s) 633, 2960
BspACI CCGC 4 cut(s) 251, 506, 845, 2011
BspANI GGCC 4 cut(s) 820, 1493, 3033, 3051
BspEI TCCGGA 1 cut(s) 325
BspFNI CGCG 1 cut(s) 3078
BspHI TCATGA 2 cut(s) 1876, 2508
BspMI ACCTGC 1 cut(s) 1690
BspPI GGATC 7 cut(s) 535, 882, 1360, 2266, 2660, 2722, 3035
BspQI GCTCTTC 2 cut(s) 2595, 2732
BspT107I GGYRCC 2 cut(s) 847, 2410
BspTI CTTAAG 2 cut(s) 1216, 1475
BsrDI GCAATG 2 cut(s) 1531, 2892
BsrFI RCCGGY 2 cut(s) 1125, 3447
BsrGI TGTACA 1 cut(s) 2990
BsrI ACTGG 6 cut(s) 512, 941, 1548, 3136, 3676, 3770
BssAI RCCGGY 2 cut(s) 1125, 3447
BssECI CCNNGG 6 cut(s) 233, 633, 2057, 2960, 3034, 3052
BssT1I CCWWGG 5 cut(s) 233, 633, 2057, 2960, 3034
Bst2UI CCWGG 6 cut(s) 822, 1250, 2076, 2103, 2526, 3525
Bst4CI ACNGT 3 cut(s) 1888, 1945, 3125
Bst6I CTCTTC 5 cut(s) 651, 660, 2595, 2732, 2787
BstAFI CTTAAG 2 cut(s) 1216, 1475
BstAUI TGTACA 1 cut(s) 2990
BstBAI YACGTR 3 cut(s) 834, 1391, 2642
BstC8I GCNNGC 3 cut(s) 1319, 2816, 2820
BstDSI CCRYGG 2 cut(s) 633, 2960
BstEII GGTNACC 1 cut(s) 3326
BstENI CCTNNNNNAGG 2 cut(s) 149, 1812
BstFNI CGCG 1 cut(s) 3078
BstH2I RGCGCY 1 cut(s) 2608
BstHHI GCGC 2 cut(s) 2607, 3080
BstMAI GTCTC 5 cut(s) 969, 1332, 2366, 2526, 3624
BstMWI GCNNNNNNNGC 7 cut(s) 284, 817, 1848, 2062, 2560, 3431, 3434
BstNI CCWGG 6 cut(s) 822, 1250, 2076, 2103, 2526, 3525
BstNSI RCATGY 8 cut(s) 220, 1345, 2383, 2554, 2578, 2818, 2931, 3801
BstPI GGTNACC 1 cut(s) 3326
BstSCI CCNGG 7 cut(s) 820, 1248, 2074, 2101, 2524, 3051, 3523
BstSFI CTRYAG 2 cut(s) 1694, 2948
BstSLI GKGCMC 3 cut(s) 833, 2222, 2647
BstSNI TACGTA 1 cut(s) 1391
BstUI CGCG 1 cut(s) 3078
BstV2I GAAGAC 1 cut(s) 3360
BstX2I RGATCY 3 cut(s) 862, 874, 2258
BstXI CCANNNNNNTGG 2 cut(s) 1256, 3109
BstYI RGATCY 3 cut(s) 862, 874, 2258
BsuI GTATCC 1 cut(s) 1773
BsuRI GGCC 4 cut(s) 820, 1493, 3033, 3051
BtgI CCRYGG 2 cut(s) 633, 2960
BtgZI GCGATG 1 cut(s) 261
BtsI GCAGTG 3 cut(s) 1647, 3114, 3223
BtsIMutI CAGTG 6 cut(s) 228, 402, 1647, 1950, 3114, 3223
BveI ACCTGC 1 cut(s) 1690
Cac8I GCNNGC 3 cut(s) 1319, 2816, 2820
CaiI CAGNNNCTG 2 cut(s) 1013, 1046
CciI TCATGA 2 cut(s) 1876, 2508
CfoI GCGC 2 cut(s) 2607, 3080
Cfr10I RCCGGY 2 cut(s) 1125, 3447
CseI GACGC 3 cut(s) 1653, 2084, 2475
Csp6I GTAC 6 cut(s) 176, 604, 835, 2037, 2991, 3702
CviQI GTAC 6 cut(s) 176, 604, 835, 2037, 2991, 3702
EaeI YGGCCR 1 cut(s) 3049
Eam1104I CTCTTC 5 cut(s) 651, 660, 2595, 2732, 2787
EarI CTCTTC 5 cut(s) 651, 660, 2595, 2732, 2787
Ecl136II GAGCTC 1 cut(s) 1559
Eco105I TACGTA 1 cut(s) 1391
Eco130I CCWWGG 5 cut(s) 233, 633, 2057, 2960, 3034
Eco24I GRGCYC 2 cut(s) 1561, 3372
Eco47I GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1169, 1378, 1817, 2032
Eco53kI GAGCTC 1 cut(s) 1559
Eco57I CTGAAG 3 cut(s) 1730, 3261, 3450
Eco88I CYCGRG 1 cut(s) 121
Eco91I GGTNACC 1 cut(s) 3326
EcoICRI GAGCTC 1 cut(s) 1559
EcoNI CCTNNNNNAGG 2 cut(s) 149, 1812
EcoO109I RGGNCCY 4 cut(s) 24, 1010, 1169, 1378
EcoO65I GGTNACC 1 cut(s) 3326
EcoRI GAATTC 1 cut(s) 1633
EcoRII CCWGG 6 cut(s) 820, 1248, 2074, 2101, 2524, 3523
EcoT14I CCWWGG 5 cut(s) 233, 633, 2057, 2960, 3034
EcoT22I ATGCAT 3 cut(s) 524, 627, 3717
EcoT38I GRGCYC 2 cut(s) 1561, 3372
ErhI CCWWGG 5 cut(s) 233, 633, 2057, 2960, 3034
FalI AAGNNNNNCTT 4 cut(s) 2811, 2843, 3529, 3561
FaqI GGGAC 6 cut(s) 10, 971, 1063, 1391, 2597, 3069
FauNDI CATATG 1 cut(s) 1373
FbaI TGATCA 3 cut(s) 925, 1873, 2248
FblI GTMKAC 2 cut(s) 1275, 2571
FriOI GRGCYC 2 cut(s) 1561, 3372
GlaI GCGC 2 cut(s) 2606, 3079
GsaI CCCAGC 1 cut(s) 3276
GsuI CTGGAG 2 cut(s) 2124, 3693
HaeII RGCGCY 1 cut(s) 2608
HaeIII GGCC 4 cut(s) 820, 1493, 3033, 3051
HapII CCGG 4 cut(s) 326, 1126, 3052, 3448
HgaI GACGC 3 cut(s) 1653, 2084, 2475
HhaI GCGC 2 cut(s) 2607, 3080
Hin6I GCGC 2 cut(s) 2605, 3078
HinP1I GCGC 2 cut(s) 2605, 3078
HincII GTYRAC 1 cut(s) 1276
HindII GTYRAC 1 cut(s) 1276
HindIII AAGCTT 9 cut(s) 188, 1283, 1319, 1406, 1478, 1862, 1908, 2453, 2477
HpaII CCGG 4 cut(s) 326, 1126, 3052, 3448
Hpy166II GTNNAC 9 cut(s) 36, 455, 784, 1276, 1469, 2220, 2572, 2645, 2723
Hpy8I GTNNAC 9 cut(s) 36, 455, 784, 1276, 1469, 2220, 2572, 2645, 2723
Hpy99I CGWCG 3 cut(s) 1775, 2906, 3362
HpyCH4III ACNGT 3 cut(s) 1888, 1945, 3125
HpyCH4IV ACGT 5 cut(s) 833, 1390, 2641, 3142, 3360
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 817, 1848, 2062, 2560, 3431, 3434
HpySE526I ACGT 5 cut(s) 833, 1390, 2641, 3142, 3360
HspAI GCGC 2 cut(s) 2605, 3078
KflI GGGWCCC 2 cut(s) 24, 1378
Kpn2I TCCGGA 1 cut(s) 325
Ksp22I TGATCA 3 cut(s) 925, 1873, 2248
LguI GCTCTTC 2 cut(s) 2595, 2732
LmnI GCTCC 7 cut(s) 256, 1141, 2105, 2568, 3088, 3390, 3794
LweI GCATC 5 cut(s) 145, 238, 1288, 3286, 3740
MaeII ACGT 5 cut(s) 833, 1390, 2641, 3142, 3360
MaeIII GTNAC 9 cut(s) 228, 894, 977, 1501, 2637, 2930, 3326, 3344, 3580
MfeI CAATTG 1 cut(s) 3624
MflI RGATCY 3 cut(s) 862, 874, 2258
MhlI GDGCHC 6 cut(s) 833, 1561, 2222, 2392, 2647, 3372
MlyI GAGTC 5 cut(s) 113, 1085, 1097, 2899, 2950
MmeI TCCRAC 1 cut(s) 1119
Mph1103I ATGCAT 3 cut(s) 524, 627, 3717
MroI TCCGGA 1 cut(s) 325
MroXI GAANNNNTTC 2 cut(s) 2455, 3651
MslI CAYNNNNRTG 3 cut(s) 209, 221, 901
MspA1I CMGCKG 4 cut(s) 508, 2011, 3428, 3437
MspCI CTTAAG 2 cut(s) 1216, 1475
MspI CCGG 4 cut(s) 326, 1126, 3052, 3448
MspR9I CCNGG 7 cut(s) 822, 1250, 2076, 2103, 2526, 3053, 3525
MunI CAATTG 1 cut(s) 3624
Mva1269I GAATGC 2 cut(s) 289, 3559
MvaI CCWGG 6 cut(s) 822, 1250, 2076, 2103, 2526, 3525
MvnI CGCG 1 cut(s) 3078
MwoI GCNNNNNNNGC 7 cut(s) 284, 817, 1848, 2062, 2560, 3431, 3434
NciI CCSGG 1 cut(s) 3053
NcoI CCATGG 2 cut(s) 633, 2960
NdeI CATATG 1 cut(s) 1373
NmeAIII GCCGAG 1 cut(s) 390
NmuCI GTSAC 5 cut(s) 894, 977, 2930, 3326, 3344
NsiI ATGCAT 3 cut(s) 524, 627, 3717
NspI RCATGY 8 cut(s) 220, 1345, 2383, 2554, 2578, 2818, 2931, 3801
OliI CACNNNNGTG 1 cut(s) 901
PaeI GCATGC 1 cut(s) 2818
PagI TCATGA 2 cut(s) 1876, 2508
PciI ACATGT 3 cut(s) 216, 2379, 2574
PciSI GCTCTTC 2 cut(s) 2595, 2732
PctI GAATGC 2 cut(s) 289, 3559
PdmI GAANNNNTTC 2 cut(s) 2455, 3651
PfoI TCCNGGA 2 cut(s) 2101, 2524
PleI GAGTC 5 cut(s) 113, 1084, 1096, 2898, 2950
PpsI GAGTC 5 cut(s) 113, 1084, 1096, 2898, 2950
Ppu21I YACGTR 3 cut(s) 834, 1391, 2642
PpuMI RGGWCCY 4 cut(s) 24, 1010, 1169, 1378
PscI ACATGT 3 cut(s) 216, 2379, 2574
PsiI TTATAA 2 cut(s) 1835, 1959
Psp124BI GAGCTC 1 cut(s) 1561
Psp5II RGGWCCY 4 cut(s) 24, 1010, 1169, 1378
Psp6I CCWGG 6 cut(s) 820, 1248, 2074, 2101, 2524, 3523
PspEI GGTNACC 1 cut(s) 3326
PspFI CCCAGC 1 cut(s) 3272
PspGI CCWGG 6 cut(s) 820, 1248, 2074, 2101, 2524, 3523
PspPPI RGGWCCY 4 cut(s) 24, 1010, 1169, 1378
PsrI GAACNNNNNNTAC 2 cut(s) 3127, 3159
PstNI CAGNNNCTG 2 cut(s) 1013, 1046
PsuI RGATCY 3 cut(s) 862, 874, 2258
PvuII CAGCTG 2 cut(s) 3428, 3437
RsaI GTAC 6 cut(s) 177, 605, 836, 2038, 2992, 3703
RsaNI GTAC 6 cut(s) 176, 604, 835, 2037, 2991, 3702
RseI CAYNNNNRTG 3 cut(s) 209, 221, 901
SacI GAGCTC 1 cut(s) 1561
SalI GTCGAC 1 cut(s) 1274
SapI GCTCTTC 2 cut(s) 2595, 2732
SchI GAGTC 5 cut(s) 113, 1085, 1097, 2899, 2950
ScrFI CCNGG 7 cut(s) 822, 1250, 2076, 2103, 2526, 3053, 3525
SduI GDGCHC 6 cut(s) 833, 1561, 2222, 2392, 2647, 3372
SfaNI GCATC 5 cut(s) 145, 238, 1288, 3286, 3740
SfcI CTRYAG 2 cut(s) 1694, 2948
SinI GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1169, 1378, 1817, 2032
SmiMI CAYNNNNRTG 3 cut(s) 209, 221, 901
SmlI CTYRAG 5 cut(s) 1153, 1216, 1475, 1812, 2369
SmoI CTYRAG 5 cut(s) 1153, 1216, 1475, 1812, 2369
SnaBI TACGTA 1 cut(s) 1391
SpeI ACTAGT 1 cut(s) 686
SphI GCATGC 1 cut(s) 2818
SsiI CCGC 4 cut(s) 251, 506, 845, 2011
SspI AATATT 3 cut(s) 1066, 2197, 3010
SstI GAGCTC 1 cut(s) 1561
StyD4I CCNGG 7 cut(s) 820, 1248, 2074, 2101, 2524, 3051, 3523
StyI CCWWGG 5 cut(s) 233, 633, 2057, 2960, 3034
TaaI ACNGT 3 cut(s) 1888, 1945, 3125
TaiI ACGT 5 cut(s) 836, 1393, 2644, 3145, 3363
TaqI TCGA 5 cut(s) 409, 1231, 1275, 1631, 1744
TatI WGTACW 2 cut(s) 175, 2990
TauI GCSGC 1 cut(s) 848
TscAI CASTG 6 cut(s) 228, 402, 1654, 1950, 3114, 3223
TseFI GTSAC 5 cut(s) 894, 977, 2930, 3326, 3344
Tsp45I GTSAC 5 cut(s) 894, 977, 2930, 3326, 3344
TspGWI ACGGA 4 cut(s) 221, 659, 2024, 2579
TspRI CASTG 6 cut(s) 228, 402, 1654, 1950, 3114, 3223
Vha464I CTTAAG 2 cut(s) 1216, 1475
VneI GTGCAC 2 cut(s) 2218, 2643
VpaK11BI GGWCC 9 cut(s) 24, 194, 323, 352, 1010, 1169, 1378, 1817, 2032
XagI CCTNNNNNAGG 2 cut(s) 149, 1812
XbaI TCTAGA 1 cut(s) 865
XceI RCATGY 8 cut(s) 220, 1345, 2383, 2554, 2578, 2818, 2931, 3801
XcmI CCANNNNNNNNNTGG 1 cut(s) 1755
XmiI GTMKAC 2 cut(s) 1275, 2571
XmnI GAANNNNTTC 2 cut(s) 2455, 3651
Zsp2I ATGCAT 3 cut(s) 524, 627, 3717
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.