Rh3BG340200

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0004130
Physical Location & Seq
Forward (+)
36510633 .. 36529179
18547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG340200.1

Sequence Viewer

Length: 4281 bp
ATGGCTGTTTCAGATGAGGAGAAAGATTATGAGGAGGAGGAGGAGGAGGAGGAGGAGCAGGCCGGTAGGGGTGGCCGACTTCTCGGATTTATGTTTGGCAATGTCAATGACTCGGGACATCTTGATGTCGATTATCTTGATGAGGATGCCAAGGAACATCTTGCTGCACTTGCCGACAAGCTGGATCCTTCTTTCACAGATATAGATTTGTCAGTAAAATCACAGCGAAAATCAGCTGATGCTGTCGAACAAGATTATGATGAGAAGGCTGAAAATGCAGTTAATTATTTTGATATTGATGAGGAATTTGAGGGACCAGAGATTCAAGCTGCTACTGAGGAGGACCATCTCTTGCCCAAAAAGGAATATCTTTCTGCAGAAGTTTCATGGGCCAAATTACGTGAAGCAGGAGATGAGGAGGAGGAAAATTATGATGAGGAAAGTTATCAGGAAGAGGAACATGAGGTGGTTGAAAATGATGTTGATGTTCAGTCTATCTCTGTCCCTGGTGATGAGGGTGTGCATATTGCAGCGGATCATAAAGGACAAACATCTGAGGAGAATGGTTGTGAAATTGGCTCGTTAGATTCTGAAAATTTGGTTGATCATGCAGAAGAGCTTCAGGACATACTTTCAGACAGAAGTTCCACACCATTGCCTGTTCTATGCATAGAAGACGGATTGGTGATCTTACGGTTTTCAGAAATCTTTGGCATTCATGTACCCTTAAAGAAGGCTGAAAAAAGAGACCATAGGTACTCTGTTGCTAAAGATAGGTATAAATCGATGGATATCTCTGATATTGTTGAAGACGATGAAGAGGCATTCCTAAAAGGAACTGGTGACGGAGTTCCATCTTTAAAACAGGCAGGTGCAGTGAAACATGCTATCTCAGAATTCAATAACGATGACTTCGACATTGCAAAATTTGACTTTGTAAAAGAGGATGCCCCTGTGGATTTGTGGGATGGGCCAGGAAAGAGCATGTGCCTCATCACAGAACCGATGAAAGAGGATAGCATTGTGGAGCCTTCTATGGAAACAAAATCACCTTTGTGTTCTACATTTTACCCTCTTGATCAGCACGACTGGGAAGAGGAAATTCTTTGGGGAAACTCTCCTGTAACAAGCAACAAGTTTGTTGAAAGTTGTGAAATTTCCGGACCTGATGAAGCTTCAATTAATAGTGAAACTGAACCTGATACTGGGTCACAAAAGATTCAGACACACTCCCAAAAAGAACTTGATGAGAAGGATCCTGGTCTTACGCTACACAGCTACTCTACTCTGTTGGAGCCTTTCGGCTCAAGAAATCTGTCAGGACCGCCATGTCCCAGTTTATCAGAAAGCAGATACCATCCCCAACTTTTAAGGCTAGAATCTCGATATGAAGTGGATGATCTTGCGGATGGTAGAGTGGAGAATTCTGGTGAGAAGCTTCATAAGGGACATGCTGTGAGGCATTTCAGCAAACTTAGCTCAAAAAACAGAGACATACTGGAAGGATCTTGGTTAGATCAAATAATTTGGGACCCAGATATACCCATTAGGAAGCCAAAGCTTATCCTTGATCTTGAAGATGAGCAAATGCTTTTTGAGATTTTGGATAACAAAGACTCTGAACATCTTAAGCTTCATTCAGGGGCCATGATTGTGACTCGCCCTTTAAAGTCAAGCAATGGGGACTCTTTGGAGCTGCCAAATCATGGAGGTCAATTTGGTTGGCGATATCTTGCTAATGACAAACACTATTCAAACAGGAAAACTTCTCAGCAACTAAAATCAAATTCTAAAAAACGCACTGCTCAAGGCATAAAGATTTATCACTCACAACCTGCACTGATGCTACAGACGATGAAGTTGAAGTTGAGCAACAAGGATCTTGCTAATTTTCATCGACCAAAAGCTTTGTGGTATCCCCATGATATTCAAATAGCTGTAAAAGAACAAGGGAAGCTGTCCACCCAAGGACCAATGAGAATTATTATAAAGAGCTTGGGTGGCAAAGGCAGTAAGGTTCATGTAGGTGCTGAGGAAACTGTTTCTTGTGTTAAAGCAAAAGCTTCAAAAAAGCTAGACTTTAAGCCATCCGAAACAGTGAAGATGTTTTACTTGGGGAGGGAACTTGAAGATGATAAAACACTTGCTGCTCAAAATGTTCAACCAAACTCTTTGGTTCATCTTGTTCGTACAAAAATATGTTTGTTGCCAAGGGCACAAAAGCTTCCTGGTGAGAATAAATCTTTGCGGCCTCCTGGAGCATTTAAGAAGAAATCTGACCTTTCGGTGAAAGATGGACATGTCTTTCTGGTTGAGTATTGTGAGGAAAGACCTTTACTTTTGAGCAATGTTGGTATGGGTGCAAGATTATGCACTTATTATCACAAATCAGCCCCAGATGATCAAGCTGGTTCGTTGTTGCGGAATGAAAACAGCAGCTTGGGACATGTGATTTCGCTAAACCCTGCTGATAAATCACCTTATCTGGGAGATACGAAAGCTGGATGTCGTCAATCATCTCTGGAAACAAACATGTACAGAGCACCTGTATTTTCTCATAAGGTGCCGTCAACTGATTATCTATTAGTTCGCTCTGCAAAGGGAAAGCTTTCAATTAGACGCATAGACAGGCTAACTGTAGTCGGACAGCAGGAACCTCTCATGGAGGTAATGTCTCCTGGAACCAAGAATCTTCAAAATTACATGATTAGCAGGCTCCTAGTCTACATTTGCCGTGAGTTCCGTGCTGCCGAAAAGCGCCATTTTCTTCCTTGCATCCGTGCAGAAGAGTTACTTTCACAATTTCCTTACCTAACTGATACCTTTATTAAAAAGAAGCTGAAGGAACTTGCGAATTTGCAGAAGGGATCAAATGGAAGATGGATTTGGGTTAAGAAGCGCAATTTCCGGATTTTCTCAGAGGATGAATTACGGAATATGGTGAAGCCAGAAGAGGTATGTGCCTATGAAAGCATGCAAGCTGGTCTTTATAGGCTCAAGCATTTAGGAATTACTGAAACACATCCTTCAGCCATATCATCTGCAATGAGTCGTCTCCCTGATGAAGCAATTACTCTGGCTGCTGCATCCCACATTGAAAGGGAACTACAGATTACTCCATGGAACTTGAGTAGCAATTTTGTAGCCTGTACACTGGGAAAAGAAACTATTGAGCGTTTGGAAATATCTGGTGTGGGTGATCCATCTGGTAGGGGCCTAGGGTTTAGTTATGTTCGTGCTACTCCGAAAGCATCAATGTCAAGCGCTGTTGTGAAGAAGAAATCTGCTGCTGGTCGAGGAGGTTCCACTGTTACCGGAACAGATTCTGATTTACGCAGATTAAGCATGGAAGCTGCACGAGAGGTTCTTCTTAAATTTGGCGTTTCTGATGAACTGATTGCGAGGCAGACCAGATGGCATCGGATTGCAATGATACGTAAGCTATCAAGTGAGCAAGCTGCATCTGGGGTCAAAGTCGATGCAAATACTATCAGCAAATATGCACGTGGACAGCGTATGTCCTTTCTTCAGCTGCAGCAGCAGAACCGTGAGAAGTGTCAAGAAATTTGGGAACGACAAGTTCAGAGTCTTTCAGCTGTAGATGGTGATGAAAATGAAAGCGATTCTGAAGGAAATAATAGTGACCTAGATTCCTTTGCTGGGGATTTAGAAAACCTGCTTGATGCAGAAGAATGTGAAGAAGGGCTAGGGGGTAAACATGAATCCAACTATGATAAGGCAGATGGTGTTAAAGGGCTTAAAATGAGAAGGCGCCCCTCCTTGGCTCAGGCAGAAGAGGAAAATGAAGATGAAGCAGCTGAAGCAGCTGAATTATGCAGGTTGCTTATGGATGTTGACCAATATAGTAGTTGCACAGATGATGAAACTGAGAGGAAGAGAAAAAAGAAAACAAGAGTTGTGGGGGATGAAGCTCGTTTGGGTCCAGGCTCCCGAACAGGTTATGGGTTTGAGAATGCAGATAGGGTAAAGCAAGTCATTGATGCAGGACAACCTGATGGTTCCTATACTTCAAAAGAGAATCCAATTGGAGACGCGAAAGTGATGGAAAATCTTCTTAAAAGAAACAAGACTGGAAAACTCAAAGGAATAAAACAGAATGATGCTGCGCCTTTGGGTCTAACGAACAAAAAACTGAAAATATCAGGAGATGGGGTCAACAAGGTGTTTAAGGAGAAGAAATCAGCAAGAGACAGTTTTGTCTGTGGAGCATGTGGTCAGGTACATAACTCAGATCAGAATTTGGTAATAAACTGTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

1426

Amino Acids

159.42

Weight (kDa)

5.31

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TBP-binding PF09247 16 - 58 1e-10 TATA box-binding protein binding
DUF3591 PF12157 578 - 1143 1e-106 Protein of unknown function (DUF3591)
Rad60-SLD PF11976 659 - 729 9.2e-06 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 661 - 731 6.8e-10 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1988
AarI CACCTGC 1 cut(s) 860
AasI GACNNNNNNGTC 2 cut(s) 1329, 4217
Acc36I ACCTGC 4 cut(s) 860, 1843, 3684, 3828
AccB1I GGYRCC 2 cut(s) 2563, 3771
AccB7I CCANNNNNTGG 1 cut(s) 1706
AccI GTMKAC 1 cut(s) 2724
AccII CGCG 1 cut(s) 4055
AccIII TCCGGA 2 cut(s) 1160, 2907
AciI CCGC 5 cut(s) 533, 1325, 1406, 2248, 2422
AclWI GGATC 9 cut(s) 179, 192, 543, 1250, 1263, 1513, 1887, 2875, 3194
AcoI YGGCCR 1 cut(s) 73
AcuI CTGAAG 6 cut(s) 605, 2861, 3012, 3512, 3648, 3840
AcvI CACGTG 1 cut(s) 3506
AcyI GRCGYC 1 cut(s) 3772
AfaI GTAC 6 cut(s) 723, 758, 2191, 2537, 3151, 4242
AfeI AGCGCT 1 cut(s) 3265
AfiI CCNNNNNNNGG 5 cut(s) 1205, 1706, 2486, 3660, 3781
AflII CTTAAG 1 cut(s) 1628
AflIII ACRYGT 3 cut(s) 2299, 2446, 2532
AjnI CCWGG 7 cut(s) 505, 973, 1258, 2227, 2254, 2677, 3943
AjuI GAANNNNNNNTTGG 2 cut(s) 2869, 2901
AleI CACNNNNGTG 1 cut(s) 1054
Alw21I GWGCWC 1 cut(s) 2545
Alw26I GTCTC 6 cut(s) 741, 1485, 2679, 3059, 4044, 4203
AlwI GGATC 9 cut(s) 179, 192, 543, 1250, 1263, 1513, 1887, 2875, 3194
AlwNI CAGNNNCTG 1 cut(s) 3326
Ama87I CYCGRG 1 cut(s) 112
Aor13HI TCCGGA 2 cut(s) 1160, 2907
Aor51HI AGCGCT 1 cut(s) 3265
AoxI GGCC 7 cut(s) 60, 73, 390, 971, 1644, 2249, 3214
AseI ATTAAT 1 cut(s) 1182
Asp700I GAANNNNTTC 4 cut(s) 618, 2608, 3322, 4071
AspA2I CCTAGG 1 cut(s) 3217
AspLEI GCGC 5 cut(s) 2760, 2901, 3266, 3774, 4129
AvaI CYCGRG 1 cut(s) 112
AvaII GGWCC 7 cut(s) 314, 343, 1163, 1322, 1531, 1970, 3941
AvrII CCTAGG 1 cut(s) 3217
BaeGI GKGCMC 1 cut(s) 2218
BamHI GGATCC 2 cut(s) 184, 1255
BanI GGYRCC 2 cut(s) 2563, 3771
BarI GAAGNNNNNNTAC 2 cut(s) 2093, 2125
BauI CACGAG 1 cut(s) 3357
BbrPI CACGTG 1 cut(s) 3506
BbsI GAAGAC 2 cut(s) 681, 816
Bbv12I GWGCWC 1 cut(s) 2545
BbvCI CCTCAGC 1 cut(s) 2031
BceAI ACGGC 2 cut(s) 2551, 2718
BciT130I CCWGG 7 cut(s) 507, 975, 1260, 2229, 2256, 2679, 3945
BciVI GTATCC 1 cut(s) 1926
BclI TGATCA 3 cut(s) 604, 1078, 2401
BcoDI GTCTC 6 cut(s) 741, 1485, 2679, 3059, 4044, 4203
BfaI CTAG 6 cut(s) 1376, 2075, 2720, 3218, 3647, 3707
BfmI CTRYAG 6 cut(s) 375, 1847, 2637, 3107, 3533, 3597
BfoI RGCGCY 3 cut(s) 2761, 3267, 3775
BfrI CTTAAG 1 cut(s) 1628
BfuAI ACCTGC 4 cut(s) 860, 1843, 3684, 3828
BfuI GTATCC 1 cut(s) 1926
BlnI CCTAGG 1 cut(s) 3217
Bme1390I CCNGG 7 cut(s) 507, 975, 1260, 2229, 2256, 2679, 3945
Bme18I GGWCC 7 cut(s) 314, 343, 1163, 1322, 1531, 1970, 3941
BmeT110I CYCGRG 1 cut(s) 112
BmrFI CCNGG 7 cut(s) 507, 975, 1260, 2229, 2256, 2679, 3945
BmrI ACTGGG 4 cut(s) 1099, 1215, 1329, 3164
BmuI ACTGGG 4 cut(s) 1099, 1215, 1329, 3164
BpiI GAAGAC 2 cut(s) 681, 816
BpmI CTGGAG 1 cut(s) 2277
Bpu10I CCTNAGC 2 cut(s) 2031, 3786
BpuEI CTTGAG 4 cut(s) 1291, 1791, 2981, 3148
Bsa29I ATCGAT 1 cut(s) 785
BsaAI YACGTR 3 cut(s) 401, 3437, 3506
BsaBI GATNNNNATC 1 cut(s) 791
BsaHI GRCGYC 1 cut(s) 3772
BsaI GGTCTC 1 cut(s) 741
BsaJI CCNNGG 7 cut(s) 150, 505, 1966, 2210, 3119, 3217, 3780
BsaWI WCCGGW 3 cut(s) 1160, 2907, 3314
BsaXI ACNNNNNCTCC 4 cut(s) 2657, 2687, 4158, 4188
Bsc4I CCNNNNNNNGG 5 cut(s) 1205, 1706, 2486, 3660, 3781
Bse118I RCCGGY 1 cut(s) 62
Bse1I ACTGG 7 cut(s) 844, 1094, 1210, 1335, 1503, 3159, 4096
Bse3DI GCAATG 7 cut(s) 106, 653, 918, 1684, 2353, 3051, 3435
Bse8I GATNNNNATC 1 cut(s) 791
BseAI TCCGGA 2 cut(s) 1160, 2907
BseBI CCWGG 7 cut(s) 507, 975, 1260, 2229, 2256, 2679, 3945
BseCI ATCGAT 1 cut(s) 785
BseDI CCNNGG 7 cut(s) 150, 505, 1966, 2210, 3119, 3217, 3780
BseJI GATNNNNATC 1 cut(s) 791
BseLI CCNNNNNNNGG 5 cut(s) 1205, 1706, 2486, 3660, 3781
BseMI GCAATG 7 cut(s) 106, 653, 918, 1684, 2353, 3051, 3435
BseMII CTCAG 9 cut(s) 327, 546, 906, 1784, 2022, 2931, 3800, 3879, 4263
BseNI ACTGG 7 cut(s) 844, 1094, 1210, 1335, 1503, 3159, 4096
BseSI GKGCMC 1 cut(s) 2218
BseYI CCCAGC 1 cut(s) 3659
BsgI GTGCAG 5 cut(s) 150, 894, 1821, 2802, 3339
Bsh1236I CGCG 1 cut(s) 4055
BshFI GGCC 7 cut(s) 62, 75, 392, 973, 1646, 2251, 3216
BshNI GGYRCC 2 cut(s) 2563, 3771
BshVI ATCGAT 1 cut(s) 785
BsiHKAI GWGCWC 1 cut(s) 2545
BsiHKCI CYCGRG 1 cut(s) 112
BsiSI CCGG 4 cut(s) 63, 1161, 2908, 3315
BslFI GGGAC 8 cut(s) 129, 327, 488, 1317, 1461, 1544, 1697, 2457
BslI CCNNNNNNNGG 5 cut(s) 1205, 1706, 2486, 3660, 3781
BsmAI GTCTC 6 cut(s) 741, 1485, 2679, 3059, 4044, 4203
BsmBI CGTCTC 2 cut(s) 3059, 4044
BsmFI GGGAC 8 cut(s) 129, 327, 488, 1317, 1461, 1544, 1697, 2457
BsmI GAATGC 3 cut(s) 714, 824, 3979
BsnI GGCC 7 cut(s) 62, 75, 392, 973, 1646, 2251, 3216
Bso31I GGTCTC 1 cut(s) 741
BsoBI CYCGRG 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 2218, 2545
Bsp13I TCCGGA 2 cut(s) 1160, 2907
Bsp1407I TGTACA 2 cut(s) 2535, 3149
Bsp19I CCATGG 1 cut(s) 3119
BspACI CCGC 5 cut(s) 533, 1325, 1406, 2248, 2422
BspANI GGCC 7 cut(s) 62, 75, 392, 973, 1646, 2251, 3216
BspCNI CTCAG 9 cut(s) 328, 547, 905, 1783, 2023, 2930, 3799, 3880, 4262
BspDI ATCGAT 1 cut(s) 785
BspEI TCCGGA 2 cut(s) 1160, 2907
BspFNI CGCG 1 cut(s) 4055
BspMAI CTGCAG 2 cut(s) 379, 3537
BspMI ACCTGC 4 cut(s) 860, 1843, 3684, 3828
BspPI GGATC 9 cut(s) 179, 192, 543, 1250, 1263, 1513, 1887, 2875, 3194
BspQI GCTCTTC 1 cut(s) 609
BspT107I GGYRCC 2 cut(s) 2563, 3771
BspTI CTTAAG 1 cut(s) 1628
BspTNI GGTCTC 1 cut(s) 741
BsrDI GCAATG 7 cut(s) 106, 653, 918, 1684, 2353, 3051, 3435
BsrFI RCCGGY 1 cut(s) 62
BsrGI TGTACA 2 cut(s) 2535, 3149
BsrI ACTGG 7 cut(s) 844, 1094, 1210, 1335, 1503, 3159, 4096
BssAI RCCGGY 1 cut(s) 62
BssECI CCNNGG 7 cut(s) 150, 505, 1966, 2210, 3119, 3217, 3780
BssNI GRCGYC 1 cut(s) 3772
BssSI CACGAG 1 cut(s) 3357
BssT1I CCWWGG 6 cut(s) 150, 1966, 2210, 3119, 3217, 3780
Bst2BI CACGAG 1 cut(s) 3357
Bst2UI CCWGG 7 cut(s) 507, 975, 1260, 2229, 2256, 2679, 3945
Bst4CI ACNGT 8 cut(s) 696, 2041, 2098, 2638, 3310, 3548, 4214, 4274
Bst6I CTCTTC 8 cut(s) 447, 609, 813, 1089, 2781, 2946, 3789, 3890
BstACI GRCGYC 1 cut(s) 3772
BstAFI CTTAAG 1 cut(s) 1628
BstAUI TGTACA 2 cut(s) 2535, 3149
BstBAI YACGTR 3 cut(s) 401, 3437, 3506
BstC8I GCNNGC 5 cut(s) 60, 2714, 2975, 2979, 3456
BstDSI CCRYGG 1 cut(s) 3119
BstFNI CGCG 1 cut(s) 4055
BstH2I RGCGCY 3 cut(s) 2761, 3267, 3775
BstHHI GCGC 5 cut(s) 2760, 2901, 3266, 3774, 4129
BstMAI GTCTC 6 cut(s) 741, 1485, 2679, 3059, 4044, 4203
BstMWI GCNNNNNNNGC 8 cut(s) 170, 275, 1476, 2001, 3342, 3538, 3821, 3824
BstNI CCWGG 7 cut(s) 507, 975, 1260, 2229, 2256, 2679, 3945
BstNSI RCATGY 8 cut(s) 887, 988, 1454, 2303, 2450, 2536, 2977, 4233
BstSCI CCNGG 7 cut(s) 505, 973, 1258, 2227, 2254, 2677, 3943
BstSFI CTRYAG 6 cut(s) 375, 1847, 2637, 3107, 3533, 3597
BstSLI GKGCMC 1 cut(s) 2218
BstSNI TACGTA 1 cut(s) 3437
BstUI CGCG 1 cut(s) 4055
BstV2I GAAGAC 2 cut(s) 681, 816
BstX2I RGATCY 4 cut(s) 184, 1255, 1505, 1879
BstYI RGATCY 4 cut(s) 184, 1255, 1505, 1879
Bsu15I ATCGAT 1 cut(s) 785
BsuI GTATCC 1 cut(s) 1926
BsuRI GGCC 7 cut(s) 62, 75, 392, 973, 1646, 2251, 3216
BsuTUI ATCGAT 1 cut(s) 785
BtgI CCRYGG 1 cut(s) 3119
BtsI GCAGTG 2 cut(s) 882, 1800
BtsIMutI CAGTG 6 cut(s) 882, 1800, 1838, 2103, 3152, 3306
BveI ACCTGC 4 cut(s) 860, 1843, 3684, 3828
Cac8I GCNNGC 5 cut(s) 60, 2714, 2975, 2979, 3456
CaiI CAGNNNCTG 1 cut(s) 3326
CfoI GCGC 5 cut(s) 2760, 2901, 3266, 3774, 4129
Cfr10I RCCGGY 1 cut(s) 62
ClaI ATCGAT 1 cut(s) 785
CseI GACGC 2 cut(s) 2628, 4061
Csp6I GTAC 6 cut(s) 722, 757, 2190, 2536, 3150, 4241
CspCI CAANNNNNGTGG 2 cut(s) 3900, 3935
CviQI GTAC 6 cut(s) 722, 757, 2190, 2536, 3150, 4241
DinI GGCGCC 1 cut(s) 3773
DraI TTTAAA 2 cut(s) 861, 1668
DrdI GACNNNNNNGTC 2 cut(s) 1329, 4217
DseDI GACNNNNNNGTC 2 cut(s) 1329, 4217
EaeI YGGCCR 1 cut(s) 73
Eam1104I CTCTTC 8 cut(s) 447, 609, 813, 1089, 2781, 2946, 3789, 3890
EarI CTCTTC 8 cut(s) 447, 609, 813, 1089, 2781, 2946, 3789, 3890
Eco105I TACGTA 1 cut(s) 3437
Eco130I CCWWGG 6 cut(s) 150, 1966, 2210, 3119, 3217, 3780
Eco31I GGTCTC 1 cut(s) 741
Eco32I GATATC 2 cut(s) 793, 1730
Eco47I GGWCC 7 cut(s) 314, 343, 1163, 1322, 1531, 1970, 3941
Eco47III AGCGCT 1 cut(s) 3265
Eco57I CTGAAG 6 cut(s) 605, 2861, 3012, 3512, 3648, 3840
Eco72I CACGTG 1 cut(s) 3506
Eco88I CYCGRG 1 cut(s) 112
EcoO109I RGGNCCY 2 cut(s) 1531, 3214
EcoRI GAATTC 2 cut(s) 896, 1423
EcoRII CCWGG 7 cut(s) 505, 973, 1258, 2227, 2254, 2677, 3943
EcoRV GATATC 2 cut(s) 793, 1730
EcoT14I CCWWGG 6 cut(s) 150, 1966, 2210, 3119, 3217, 3780
EcoT22I ATGCAT 1 cut(s) 671
EgeI GGCGCC 1 cut(s) 3773
EheI GGCGCC 1 cut(s) 3773
ErhI CCWWGG 6 cut(s) 150, 1966, 2210, 3119, 3217, 3780
Esp3I CGTCTC 2 cut(s) 3059, 4044
FalI AAGNNNNNCTT 6 cut(s) 2063, 2095, 2778, 2810, 2970, 3002
FaqI GGGAC 8 cut(s) 129, 327, 488, 1317, 1461, 1544, 1697, 2457
FbaI TGATCA 3 cut(s) 604, 1078, 2401
FblI GTMKAC 1 cut(s) 2724
FspBI CTAG 6 cut(s) 1376, 2075, 2720, 3218, 3647, 3707
GlaI GCGC 5 cut(s) 2759, 2900, 3265, 3773, 4128
GsaI CCCAGC 1 cut(s) 3663
GsuI CTGGAG 1 cut(s) 2277
HaeII RGCGCY 3 cut(s) 2761, 3267, 3775
HaeIII GGCC 7 cut(s) 62, 75, 392, 973, 1646, 2251, 3216
HapII CCGG 4 cut(s) 63, 1161, 2908, 3315
HgaI GACGC 2 cut(s) 2628, 4061
HhaI GCGC 5 cut(s) 2760, 2901, 3266, 3774, 4129
Hin1I GRCGYC 1 cut(s) 3772
Hin6I GCGC 5 cut(s) 2758, 2899, 3264, 3772, 4127
HinP1I GCGC 5 cut(s) 2758, 2899, 3264, 3772, 4127
HincII GTYRAC 3 cut(s) 2571, 3856, 4177
HindII GTYRAC 3 cut(s) 2571, 3856, 4177
HindIII AAGCTT 8 cut(s) 1173, 1436, 1559, 1631, 1905, 2061, 2222, 2606
HpaII CCGG 4 cut(s) 63, 1161, 2908, 3315
Hpy166II GTNNAC 8 cut(s) 1962, 2571, 2725, 3152, 3509, 3716, 3856, 4177
Hpy8I GTNNAC 8 cut(s) 1962, 2571, 2725, 3152, 3509, 3716, 3856, 4177
HpyCH4III ACNGT 8 cut(s) 696, 2041, 2098, 2638, 3310, 3548, 4214, 4274
HpyCH4IV ACGT 3 cut(s) 400, 3436, 3505
HpyF10VI GCNNNNNNNGC 8 cut(s) 170, 275, 1476, 2001, 3342, 3538, 3821, 3824
HpySE526I ACGT 3 cut(s) 400, 3436, 3505
Hsp92I GRCGYC 1 cut(s) 3772
HspAI GCGC 5 cut(s) 2758, 2899, 3264, 3772, 4127
KasI GGCGCC 1 cut(s) 3771
KflI GGGWCCC 1 cut(s) 1531
Kpn2I TCCGGA 2 cut(s) 1160, 2907
Ksp22I TGATCA 3 cut(s) 604, 1078, 2401
LguI GCTCTTC 1 cut(s) 609
LmnI GCTCC 8 cut(s) 55, 1027, 1294, 1693, 2258, 2721, 3953, 4226
MaeI CTAG 6 cut(s) 1376, 2075, 2720, 3218, 3647, 3707
MaeII ACGT 3 cut(s) 400, 3436, 3505
MaeIII GTNAC 7 cut(s) 842, 1123, 1209, 1654, 2790, 3310, 3641
MfeI CAATTG 1 cut(s) 4044
MflI RGATCY 4 cut(s) 184, 1255, 1505, 1879
MhlI GDGCHC 2 cut(s) 2218, 2545
Mly113I GGCGCC 1 cut(s) 3772
MlyI GAGTC 6 cut(s) 104, 1610, 1651, 1679, 3058, 3595
MmeI TCCRAC 3 cut(s) 1272, 2623, 3750
Mph1103I ATGCAT 1 cut(s) 671
MroI TCCGGA 2 cut(s) 1160, 2907
MroXI GAANNNNTTC 4 cut(s) 618, 2608, 3322, 4071
MslI CAYNNNNRTG 4 cut(s) 123, 1054, 1652, 2025
MspA1I CMGCKG 6 cut(s) 236, 533, 3532, 3596, 3818, 3827
MspCI CTTAAG 1 cut(s) 1628
MspI CCGG 4 cut(s) 63, 1161, 2908, 3315
MspR9I CCNGG 7 cut(s) 507, 975, 1260, 2229, 2256, 2679, 3945
MunI CAATTG 1 cut(s) 4044
Mva1269I GAATGC 3 cut(s) 714, 824, 3979
MvaI CCWGG 7 cut(s) 507, 975, 1260, 2229, 2256, 2679, 3945
MvnI CGCG 1 cut(s) 4055
MwoI GCNNNNNNNGC 8 cut(s) 170, 275, 1476, 2001, 3342, 3538, 3821, 3824
NarI GGCGCC 1 cut(s) 3772
NcoI CCATGG 1 cut(s) 3119
NmuCI GTSAC 4 cut(s) 842, 1209, 1654, 3641
NsiI ATGCAT 1 cut(s) 671
NspI RCATGY 8 cut(s) 887, 988, 1454, 2303, 2450, 2536, 2977, 4233
OliI CACNNNNGTG 1 cut(s) 1054
PaeI GCATGC 1 cut(s) 2977
PaqCI CACCTGC 1 cut(s) 860
PciI ACATGT 3 cut(s) 2299, 2446, 2532
PciSI GCTCTTC 1 cut(s) 609
PcsI WCGNNNNNNNCGW 2 cut(s) 912, 3511
PctI GAATGC 3 cut(s) 714, 824, 3979
PdmI GAANNNNTTC 4 cut(s) 618, 2608, 3322, 4071
PflMI CCANNNNNTGG 1 cut(s) 1706
PfoI TCCNGGA 2 cut(s) 2254, 2677
PleI GAGTC 6 cut(s) 104, 1610, 1651, 1679, 3057, 3594
PluTI GGCGCC 1 cut(s) 3775
PmaCI CACGTG 1 cut(s) 3506
PmlI CACGTG 1 cut(s) 3506
PpsI GAGTC 6 cut(s) 104, 1610, 1651, 1679, 3057, 3594
Ppu21I YACGTR 3 cut(s) 401, 3437, 3506
PpuMI RGGWCCY 1 cut(s) 1531
PscI ACATGT 3 cut(s) 2299, 2446, 2532
PshBI ATTAAT 1 cut(s) 1182
PsiI TTATAA 1 cut(s) 1988
Psp5II RGGWCCY 1 cut(s) 1531
Psp6I CCWGG 7 cut(s) 505, 973, 1258, 2227, 2254, 2677, 3943
PspCI CACGTG 1 cut(s) 3506
PspFI CCCAGC 1 cut(s) 3659
PspGI CCWGG 7 cut(s) 505, 973, 1258, 2227, 2254, 2677, 3943
PspPPI RGGWCCY 1 cut(s) 1531
PstI CTGCAG 2 cut(s) 379, 3537
PstNI CAGNNNCTG 1 cut(s) 3326
PsuI RGATCY 4 cut(s) 184, 1255, 1505, 1879
PvuII CAGCTG 5 cut(s) 236, 3532, 3596, 3818, 3827
RsaI GTAC 6 cut(s) 723, 758, 2191, 2537, 3151, 4242
RsaNI GTAC 6 cut(s) 722, 757, 2190, 2536, 3150, 4241
RseI CAYNNNNRTG 4 cut(s) 123, 1054, 1652, 2025
SapI GCTCTTC 1 cut(s) 609
SchI GAGTC 6 cut(s) 104, 1610, 1651, 1679, 3058, 3595
ScrFI CCNGG 7 cut(s) 507, 975, 1260, 2229, 2256, 2679, 3945
SduI GDGCHC 2 cut(s) 2218, 2545
SfcI CTRYAG 6 cut(s) 375, 1847, 2637, 3107, 3533, 3597
SfoI GGCGCC 1 cut(s) 3773
SinI GGWCC 7 cut(s) 314, 343, 1163, 1322, 1531, 1970, 3941
SmiMI CAYNNNNRTG 4 cut(s) 123, 1054, 1652, 2025
SmlI CTYRAG 5 cut(s) 1306, 1628, 1806, 2996, 3127
SmoI CTYRAG 5 cut(s) 1306, 1628, 1806, 2996, 3127
SnaBI TACGTA 1 cut(s) 3437
SphI GCATGC 1 cut(s) 2977
SsiI CCGC 5 cut(s) 533, 1325, 1406, 2248, 2422
SspDI GGCGCC 1 cut(s) 3771
SspMI CTAG 6 cut(s) 1376, 2075, 2720, 3218, 3647, 3707
StyD4I CCNGG 7 cut(s) 505, 973, 1258, 2227, 2254, 2677, 3943
StyI CCWWGG 6 cut(s) 150, 1966, 2210, 3119, 3217, 3780
TaaI ACNGT 8 cut(s) 696, 2041, 2098, 2638, 3310, 3548, 4214, 4274
TaiI ACGT 3 cut(s) 403, 3439, 3508
TaqI TCGA 8 cut(s) 129, 246, 785, 915, 1384, 1897, 3295, 3477
TatI WGTACW 2 cut(s) 2535, 3149
TauI GCSGC 1 cut(s) 2251
TscAI CASTG 6 cut(s) 882, 1807, 1845, 2103, 3159, 3313
TseFI GTSAC 4 cut(s) 842, 1209, 1654, 3641
Tsp45I GTSAC 4 cut(s) 842, 1209, 1654, 3641
TspGWI ACGGA 5 cut(s) 693, 861, 2732, 2768, 2947
TspRI CASTG 6 cut(s) 882, 1807, 1845, 2103, 3159, 3313
Van91I CCANNNNNTGG 1 cut(s) 1706
Vha464I CTTAAG 1 cut(s) 1628
VpaK11BI GGWCC 7 cut(s) 314, 343, 1163, 1322, 1531, 1970, 3941
VspI ATTAAT 1 cut(s) 1182
XceI RCATGY 8 cut(s) 887, 988, 1454, 2303, 2450, 2536, 2977, 4233
XcmI CCANNNNNNNNNTGG 1 cut(s) 1908
XmaJI CCTAGG 1 cut(s) 3217
XmiI GTMKAC 1 cut(s) 2724
XmnI GAANNNNTTC 4 cut(s) 618, 2608, 3322, 4071
XspI CTAG 6 cut(s) 1376, 2075, 2720, 3218, 3647, 3707
Zsp2I ATGCAT 1 cut(s) 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.