Transcription initiation factor TFIID subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32750 AT3G19040 AT3G19040 |
| fragaria_vesca | FvH4_1g29900 FvH4_1g29900 FvH4_1g29900 FvH4_3g05980 FvH4_3g05980 FvH4_3g05980 |
| malus_domestica | MD04G1047300.v1.1 |
| prunus_persica | Prupe.1G559000_v2.0.a1 |
| pyrus_communis | pycom04g04140 |
| rosa_chinensis | RchiOBHm_Chr3g0492481 RchiOBHm_Chr5g0013481 |
| rosa_laevigata | RLG00000022765 RLG00000029713 RLG00000032019 |
| rosa_multiflora | Rmu_sc0000971.1_g000001 Rmu_sc0020049.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00063080 Rroxscaffold_6G00392250 |
| rosa_rugosa | Rorug01G0101000 Rorug01G0101100 Rorug05G0009500 |
| rosa_samantha | Rh3AG304400 Rh3BG340200 Rh3CG337500 Rh3DG339500 Rh5BG101100 Rh5CG112900 Rh5DG099700 |
| rosa_wichuraiana | Rw3G026820 Rw5G009130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1997 |
| AarI | CACCTGC | 1 cut(s) | 869 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 1338, 4196 |
| Acc36I | ACCTGC | 4 cut(s) | 869, 1852, 3687, 3831 |
| AccB1I | GGYRCC | 3 cut(s) | 2566, 3774, 5255 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1715 |
| AccBSI | CCGCTC | 1 cut(s) | 4510 |
| AccI | GTMKAC | 2 cut(s) | 2727, 4544 |
| AccII | CGCG | 1 cut(s) | 4034 |
| AccIII | TCCGGA | 1 cut(s) | 2910 |
| AciI | CCGC | 5 cut(s) | 542, 1334, 2257, 2425, 4510 |
| AcoI | YGGCCR | 3 cut(s) | 82, 4511, 4515 |
| AcuI | CTGAAG | 9 cut(s) | 614, 2864, 3015, 3515, 3651, 3843, 4431, 5685, 5691 |
| AcvI | CACGTG | 1 cut(s) | 3509 |
| AcyI | GRCGYC | 1 cut(s) | 3775 |
| AdeI | CACNNNGTG | 1 cut(s) | 2156 |
| AfaI | GTAC | 8 cut(s) | 732, 767, 2200, 2540, 3154, 4599, 5314, 5510 |
| AfeI | AGCGCT | 1 cut(s) | 3268 |
| AflII | CTTAAG | 2 cut(s) | 1637, 4550 |
| AflIII | ACRYGT | 3 cut(s) | 2308, 2449, 2535 |
| AjnI | CCWGG | 9 cut(s) | 982, 1267, 2236, 2263, 2680, 3922, 4278, 4394, 5587 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2872, 2904 |
| AleI | CACNNNNGTG | 1 cut(s) | 1063 |
| Alw21I | GWGCWC | 5 cut(s) | 2161, 2548, 4856, 4869, 5097 |
| Alw26I | GTCTC | 9 cut(s) | 517, 750, 1494, 2682, 3062, 4023, 4182, 4347, 4487 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 3329 |
| Ama87I | CYCGRG | 1 cut(s) | 121 |
| Aor13HI | TCCGGA | 1 cut(s) | 2910 |
| Aor51HI | AGCGCT | 1 cut(s) | 3268 |
| AseI | ATTAAT | 1 cut(s) | 1191 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 627, 2611, 3325, 4050, 4467 |
| AspA2I | CCTAGG | 1 cut(s) | 3220 |
| AspLEI | GCGC | 6 cut(s) | 2763, 2904, 3269, 3777, 4108, 5463 |
| AsuC2I | CCSGG | 1 cut(s) | 5519 |
| AvaI | CYCGRG | 1 cut(s) | 121 |
| AvaII | GGWCC | 7 cut(s) | 323, 352, 1172, 1331, 1540, 1979, 3920 |
| AvrII | CCTAGG | 1 cut(s) | 3220 |
| BaeGI | GKGCMC | 1 cut(s) | 2227 |
| BamHI | GGATCC | 3 cut(s) | 193, 1036, 1264 |
| BanI | GGYRCC | 3 cut(s) | 2566, 3774, 5255 |
| BanII | GRGCYC | 1 cut(s) | 5097 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2102, 2134 |
| BauI | CACGAG | 2 cut(s) | 3360, 4857 |
| BbrPI | CACGTG | 1 cut(s) | 3509 |
| BbsI | GAAGAC | 3 cut(s) | 690, 825, 5171 |
| Bbv12I | GWGCWC | 5 cut(s) | 2161, 2548, 4856, 4869, 5097 |
| BbvCI | CCTCAGC | 1 cut(s) | 2040 |
| BceAI | ACGGC | 4 cut(s) | 2554, 2721, 4649, 5192 |
| BciT130I | CCWGG | 9 cut(s) | 984, 1269, 2238, 2265, 2682, 3924, 4280, 4396, 5589 |
| BciVI | GTATCC | 3 cut(s) | 1935, 2789, 5603 |
| BclI | TGATCA | 2 cut(s) | 613, 1087 |
| BcnI | CCSGG | 1 cut(s) | 5519 |
| BcoDI | GTCTC | 9 cut(s) | 517, 750, 1494, 2682, 3062, 4023, 4182, 4347, 4487 |
| BfaI | CTAG | 8 cut(s) | 1385, 2084, 2723, 3221, 3414, 3650, 4829, 4965 |
| BfmI | CTRYAG | 7 cut(s) | 384, 1856, 2640, 3110, 3536, 3600, 5688 |
| BfoI | RGCGCY | 4 cut(s) | 2764, 3270, 3778, 5464 |
| BfrI | CTTAAG | 2 cut(s) | 1637, 4550 |
| BfuAI | ACCTGC | 4 cut(s) | 869, 1852, 3687, 3831 |
| BfuI | GTATCC | 3 cut(s) | 1935, 2789, 5603 |
| BglII | AGATCT | 2 cut(s) | 4291, 4717 |
| BlnI | CCTAGG | 1 cut(s) | 3220 |
| Bme18I | GGWCC | 7 cut(s) | 323, 352, 1172, 1331, 1540, 1979, 3920 |
| BmeT110I | CYCGRG | 1 cut(s) | 121 |
| BmrI | ACTGGG | 5 cut(s) | 1108, 1224, 1338, 3167, 4545 |
| BmuI | ACTGGG | 5 cut(s) | 1108, 1224, 1338, 3167, 4545 |
| BpiI | GAAGAC | 3 cut(s) | 690, 825, 5171 |
| BpmI | CTGGAG | 5 cut(s) | 2286, 4272, 4316, 4509, 5421 |
| Bpu10I | CCTNAGC | 3 cut(s) | 2040, 3789, 5096 |
| BpuEI | CTTGAG | 5 cut(s) | 1300, 1800, 1959, 2984, 3151 |
| BpuMI | CCSGG | 1 cut(s) | 5519 |
| Bsa29I | ATCGAT | 2 cut(s) | 794, 3480 |
| BsaAI | YACGTR | 3 cut(s) | 410, 3440, 3509 |
| BsaBI | GATNNNNATC | 3 cut(s) | 800, 4830, 5552 |
| BsaHI | GRCGYC | 1 cut(s) | 3775 |
| BsaI | GGTCTC | 1 cut(s) | 750 |
| BsaJI | CCNNGG | 7 cut(s) | 2219, 3122, 3220, 3783, 4395, 4575, 5466 |
| BsaWI | WCCGGW | 3 cut(s) | 2910, 3317, 4070 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 2660, 2690, 4137, 4167, 4843, 4873, 5322, 5352 |
| Bse118I | RCCGGY | 2 cut(s) | 71, 4513 |
| Bse3DI | GCAATG | 7 cut(s) | 115, 662, 927, 1693, 2362, 3054, 3438 |
| Bse8I | GATNNNNATC | 3 cut(s) | 800, 4830, 5552 |
| BseAI | TCCGGA | 1 cut(s) | 2910 |
| BseBI | CCWGG | 9 cut(s) | 984, 1269, 2238, 2265, 2682, 3924, 4280, 4396, 5589 |
| BseCI | ATCGAT | 2 cut(s) | 794, 3480 |
| BseDI | CCNNGG | 7 cut(s) | 2219, 3122, 3220, 3783, 4395, 4575, 5466 |
| BseJI | GATNNNNATC | 3 cut(s) | 800, 4830, 5552 |
| BseMI | GCAATG | 7 cut(s) | 115, 662, 927, 1693, 2362, 3054, 3438 |
| BseSI | GKGCMC | 1 cut(s) | 2227 |
| BseX3I | CGGCCG | 1 cut(s) | 4511 |
| BseYI | CCCAGC | 2 cut(s) | 3662, 3709 |
| BsgI | GTGCAG | 6 cut(s) | 159, 903, 1830, 2805, 3342, 4401 |
| Bsh1236I | CGCG | 1 cut(s) | 4034 |
| Bsh1285I | CGRYCG | 2 cut(s) | 4514, 4644 |
| BshNI | GGYRCC | 3 cut(s) | 2566, 3774, 5255 |
| BshVI | ATCGAT | 2 cut(s) | 794, 3480 |
| BsiEI | CGRYCG | 2 cut(s) | 4514, 4644 |
| BsiHKAI | GWGCWC | 5 cut(s) | 2161, 2548, 4856, 4869, 5097 |
| BsiHKCI | CYCGRG | 1 cut(s) | 121 |
| BsiSI | CCGG | 6 cut(s) | 72, 2911, 3318, 4071, 4514, 5518 |
| BslFI | GGGAC | 8 cut(s) | 138, 336, 1326, 1470, 1553, 1706, 2460, 4794 |
| BsmAI | GTCTC | 9 cut(s) | 517, 750, 1494, 2682, 3062, 4023, 4182, 4347, 4487 |
| BsmBI | CGTCTC | 2 cut(s) | 3062, 4023 |
| BsmFI | GGGAC | 8 cut(s) | 138, 336, 1326, 1470, 1553, 1706, 2460, 4794 |
| BsmI | GAATGC | 4 cut(s) | 723, 833, 3958, 5241 |
| Bso31I | GGTCTC | 1 cut(s) | 750 |
| BsoBI | CYCGRG | 1 cut(s) | 121 |
| Bsp1286I | GDGCHC | 6 cut(s) | 2161, 2227, 2548, 4856, 4869, 5097 |
| Bsp13I | TCCGGA | 1 cut(s) | 2910 |
| Bsp1407I | TGTACA | 2 cut(s) | 2538, 3152 |
| Bsp19I | CCATGG | 2 cut(s) | 3122, 5466 |
| BspACI | CCGC | 5 cut(s) | 542, 1334, 2257, 2425, 4510 |
| BspDI | ATCGAT | 2 cut(s) | 794, 3480 |
| BspEI | TCCGGA | 1 cut(s) | 2910 |
| BspFNI | CGCG | 1 cut(s) | 4034 |
| BspHI | TCATGA | 1 cut(s) | 4267 |
| BspMAI | CTGCAG | 2 cut(s) | 388, 3540 |
| BspMI | ACCTGC | 4 cut(s) | 869, 1852, 3687, 3831 |
| BspQI | GCTCTTC | 1 cut(s) | 618 |
| BspT107I | GGYRCC | 3 cut(s) | 2566, 3774, 5255 |
| BspTI | CTTAAG | 2 cut(s) | 1637, 4550 |
| BspTNI | GGTCTC | 1 cut(s) | 750 |
| BsrBI | CCGCTC | 1 cut(s) | 4510 |
| BsrDI | GCAATG | 7 cut(s) | 115, 662, 927, 1693, 2362, 3054, 3438 |
| BsrFI | RCCGGY | 2 cut(s) | 71, 4513 |
| BsrGI | TGTACA | 2 cut(s) | 2538, 3152 |
| BssAI | RCCGGY | 2 cut(s) | 71, 4513 |
| BssECI | CCNNGG | 7 cut(s) | 2219, 3122, 3220, 3783, 4395, 4575, 5466 |
| BssNI | GRCGYC | 1 cut(s) | 3775 |
| BssSI | CACGAG | 2 cut(s) | 3360, 4857 |
| BssT1I | CCWWGG | 6 cut(s) | 2219, 3122, 3220, 3783, 4575, 5466 |
| Bst2BI | CACGAG | 2 cut(s) | 3360, 4857 |
| Bst2UI | CCWGG | 9 cut(s) | 984, 1269, 2238, 2265, 2682, 3924, 4280, 4396, 5589 |
| Bst4CI | ACNGT | 9 cut(s) | 705, 2050, 2107, 2641, 3313, 3551, 4193, 4755, 5579 |
| Bst6I | CTCTTC | 9 cut(s) | 456, 618, 822, 1098, 2784, 3792, 3869, 5022, 5046 |
| BstACI | GRCGYC | 1 cut(s) | 3775 |
| BstAFI | CTTAAG | 2 cut(s) | 1637, 4550 |
| BstAUI | TGTACA | 2 cut(s) | 2538, 3152 |
| BstBAI | YACGTR | 3 cut(s) | 410, 3440, 3509 |
| BstC8I | GCNNGC | 8 cut(s) | 69, 2717, 2978, 2982, 3459, 4515, 5181, 5677 |
| BstDSI | CCRYGG | 2 cut(s) | 3122, 5466 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3211 |
| BstFNI | CGCG | 1 cut(s) | 4034 |
| BstH2I | RGCGCY | 4 cut(s) | 2764, 3270, 3778, 5464 |
| BstHHI | GCGC | 6 cut(s) | 2763, 2904, 3269, 3777, 4108, 5463 |
| BstMAI | GTCTC | 9 cut(s) | 517, 750, 1494, 2682, 3062, 4023, 4182, 4347, 4487 |
| BstMCI | CGRYCG | 2 cut(s) | 4514, 4644 |
| BstNI | CCWGG | 9 cut(s) | 984, 1269, 2238, 2265, 2682, 3924, 4280, 4396, 5589 |
| BstNSI | RCATGY | 8 cut(s) | 896, 997, 1463, 2312, 2453, 2539, 2980, 4212 |
| BstSFI | CTRYAG | 7 cut(s) | 384, 1856, 2640, 3110, 3536, 3600, 5688 |
| BstSLI | GKGCMC | 1 cut(s) | 2227 |
| BstSNI | TACGTA | 1 cut(s) | 3440 |
| BstUI | CGCG | 1 cut(s) | 4034 |
| BstV2I | GAAGAC | 3 cut(s) | 690, 825, 5171 |
| BstX2I | RGATCY | 8 cut(s) | 193, 1036, 1264, 1514, 1888, 4291, 4717, 5470 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1418 |
| BstYI | RGATCY | 8 cut(s) | 193, 1036, 1264, 1514, 1888, 4291, 4717, 5470 |
| BstZI | CGGCCG | 1 cut(s) | 4511 |
| Bsu15I | ATCGAT | 2 cut(s) | 794, 3480 |
| BsuI | GTATCC | 3 cut(s) | 1935, 2789, 5603 |
| BsuTUI | ATCGAT | 2 cut(s) | 794, 3480 |
| BtgI | CCRYGG | 2 cut(s) | 3122, 5466 |
| BtgZI | GCGATG | 1 cut(s) | 988 |
| BtsI | GCAGTG | 2 cut(s) | 891, 1809 |
| BtsIMutI | CAGTG | 7 cut(s) | 891, 1809, 1847, 2112, 2301, 3155, 3309 |
| BveI | ACCTGC | 4 cut(s) | 869, 1852, 3687, 3831 |
| Cac8I | GCNNGC | 8 cut(s) | 69, 2717, 2978, 2982, 3459, 4515, 5181, 5677 |
| CaiI | CAGNNNCTG | 1 cut(s) | 3329 |
| CciI | TCATGA | 1 cut(s) | 4267 |
| CfoI | GCGC | 6 cut(s) | 2763, 2904, 3269, 3777, 4108, 5463 |
| Cfr10I | RCCGGY | 2 cut(s) | 71, 4513 |
| ClaI | ATCGAT | 2 cut(s) | 794, 3480 |
| CseI | GACGC | 4 cut(s) | 2631, 4040, 4796, 5309 |
| Csp6I | GTAC | 8 cut(s) | 731, 766, 2199, 2539, 3153, 4598, 5313, 5509 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 3879, 3914 |
| CviQI | GTAC | 8 cut(s) | 731, 766, 2199, 2539, 3153, 4598, 5313, 5509 |
| DinI | GGCGCC | 1 cut(s) | 3776 |
| DraI | TTTAAA | 2 cut(s) | 870, 1677 |
| DraIII | CACNNNGTG | 1 cut(s) | 2156 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 1338, 4196 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 1338, 4196 |
| EaeI | YGGCCR | 3 cut(s) | 82, 4511, 4515 |
| EagI | CGGCCG | 1 cut(s) | 4511 |
| Eam1104I | CTCTTC | 9 cut(s) | 456, 618, 822, 1098, 2784, 3792, 3869, 5022, 5046 |
| EarI | CTCTTC | 9 cut(s) | 456, 618, 822, 1098, 2784, 3792, 3869, 5022, 5046 |
| Ecl136II | GAGCTC | 1 cut(s) | 5095 |
| EclXI | CGGCCG | 1 cut(s) | 4511 |
| Eco105I | TACGTA | 1 cut(s) | 3440 |
| Eco130I | CCWWGG | 6 cut(s) | 2219, 3122, 3220, 3783, 4575, 5466 |
| Eco24I | GRGCYC | 1 cut(s) | 5097 |
| Eco31I | GGTCTC | 1 cut(s) | 750 |
| Eco32I | GATATC | 1 cut(s) | 802 |
| Eco47I | GGWCC | 7 cut(s) | 323, 352, 1172, 1331, 1540, 1979, 3920 |
| Eco47III | AGCGCT | 1 cut(s) | 3268 |
| Eco52I | CGGCCG | 1 cut(s) | 4511 |
| Eco53kI | GAGCTC | 1 cut(s) | 5095 |
| Eco57I | CTGAAG | 9 cut(s) | 614, 2864, 3015, 3515, 3651, 3843, 4431, 5685, 5691 |
| Eco72I | CACGTG | 1 cut(s) | 3509 |
| Eco88I | CYCGRG | 1 cut(s) | 121 |
| EcoICRI | GAGCTC | 1 cut(s) | 5095 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3211 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1540, 3217 |
| EcoRI | GAATTC | 3 cut(s) | 905, 1432, 4327 |
| EcoRII | CCWGG | 9 cut(s) | 982, 1267, 2236, 2263, 2680, 3922, 4278, 4394, 5587 |
| EcoRV | GATATC | 1 cut(s) | 802 |
| EcoT14I | CCWWGG | 6 cut(s) | 2219, 3122, 3220, 3783, 4575, 5466 |
| EcoT22I | ATGCAT | 2 cut(s) | 534, 680 |
| EcoT38I | GRGCYC | 1 cut(s) | 5097 |
| EgeI | GGCGCC | 1 cut(s) | 3776 |
| EheI | GGCGCC | 1 cut(s) | 3776 |
| ErhI | CCWWGG | 6 cut(s) | 2219, 3122, 3220, 3783, 4575, 5466 |
| Esp3I | CGTCTC | 2 cut(s) | 3062, 4023 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 2072, 2104, 2973, 3005 |
| FaqI | GGGAC | 8 cut(s) | 138, 336, 1326, 1470, 1553, 1706, 2460, 4794 |
| FbaI | TGATCA | 2 cut(s) | 613, 1087 |
| FblI | GTMKAC | 2 cut(s) | 2727, 4544 |
| FriOI | GRGCYC | 1 cut(s) | 5097 |
| FseI | GGCCGGCC | 1 cut(s) | 4517 |
| FspBI | CTAG | 8 cut(s) | 1385, 2084, 2723, 3221, 3414, 3650, 4829, 4965 |
| GlaI | GCGC | 6 cut(s) | 2762, 2903, 3268, 3776, 4107, 5462 |
| GsaI | CCCAGC | 2 cut(s) | 3666, 3713 |
| GsuI | CTGGAG | 5 cut(s) | 2286, 4272, 4316, 4509, 5421 |
| HaeII | RGCGCY | 4 cut(s) | 2764, 3270, 3778, 5464 |
| HapII | CCGG | 6 cut(s) | 72, 2911, 3318, 4071, 4514, 5518 |
| HgaI | GACGC | 4 cut(s) | 2631, 4040, 4796, 5309 |
| HhaI | GCGC | 6 cut(s) | 2763, 2904, 3269, 3777, 4108, 5463 |
| Hin1I | GRCGYC | 1 cut(s) | 3775 |
| Hin6I | GCGC | 6 cut(s) | 2761, 2902, 3267, 3775, 4106, 5461 |
| HinP1I | GCGC | 6 cut(s) | 2761, 2902, 3267, 3775, 4106, 5461 |
| HincII | GTYRAC | 3 cut(s) | 2574, 4156, 4458 |
| HindII | GTYRAC | 3 cut(s) | 2574, 4156, 4458 |
| HpaII | CCGG | 6 cut(s) | 72, 2911, 3318, 4071, 4514, 5518 |
| Hpy99I | CGWCG | 2 cut(s) | 5325, 5583 |
| HpyCH4III | ACNGT | 9 cut(s) | 705, 2050, 2107, 2641, 3313, 3551, 4193, 4755, 5579 |
| HpyCH4IV | ACGT | 6 cut(s) | 409, 3439, 3508, 4662, 5143, 5538 |
| HpySE526I | ACGT | 6 cut(s) | 409, 3439, 3508, 4662, 5143, 5538 |
| Hsp92I | GRCGYC | 1 cut(s) | 3775 |
| HspAI | GCGC | 6 cut(s) | 2761, 2902, 3267, 3775, 4106, 5461 |
| KasI | GGCGCC | 1 cut(s) | 3774 |
| KflI | GGGWCCC | 1 cut(s) | 1540 |
| Kpn2I | TCCGGA | 1 cut(s) | 2910 |
| KroI | GCCGGC | 1 cut(s) | 4513 |
| KroNI | GCCGGC | 1 cut(s) | 4515 |
| Ksp22I | TGATCA | 2 cut(s) | 613, 1087 |
| LguI | GCTCTTC | 1 cut(s) | 618 |
| MaeI | CTAG | 8 cut(s) | 1385, 2084, 2723, 3221, 3414, 3650, 4829, 4965 |
| MaeII | ACGT | 6 cut(s) | 409, 3439, 3508, 4662, 5143, 5538 |
| MbiI | CCGCTC | 1 cut(s) | 4510 |
| MfeI | CAATTG | 1 cut(s) | 4023 |
| MflI | RGATCY | 8 cut(s) | 193, 1036, 1264, 1514, 1888, 4291, 4717, 5470 |
| MhlI | GDGCHC | 6 cut(s) | 2161, 2227, 2548, 4856, 4869, 5097 |
| Mly113I | GGCGCC | 1 cut(s) | 3775 |
| MlyI | GAGTC | 8 cut(s) | 113, 1619, 1660, 1688, 3061, 3598, 4666, 5201 |
| MmeI | TCCRAC | 5 cut(s) | 171, 1281, 2626, 3753, 4664 |
| Mph1103I | ATGCAT | 2 cut(s) | 534, 680 |
| MroI | TCCGGA | 1 cut(s) | 2910 |
| MroNI | GCCGGC | 1 cut(s) | 4513 |
| MroXI | GAANNNNTTC | 5 cut(s) | 627, 2611, 3325, 4050, 4467 |
| MslI | CAYNNNNRTG | 5 cut(s) | 132, 1063, 1416, 1661, 2034 |
| MspA1I | CMGCKG | 6 cut(s) | 245, 542, 3535, 3599, 3821, 3830 |
| MspCI | CTTAAG | 2 cut(s) | 1637, 4550 |
| MspI | CCGG | 6 cut(s) | 72, 2911, 3318, 4071, 4514, 5518 |
| MunI | CAATTG | 1 cut(s) | 4023 |
| Mva1269I | GAATGC | 4 cut(s) | 723, 833, 3958, 5241 |
| MvaI | CCWGG | 9 cut(s) | 984, 1269, 2238, 2265, 2682, 3924, 4280, 4396, 5589 |
| MvnI | CGCG | 1 cut(s) | 4034 |
| NaeI | GCCGGC | 1 cut(s) | 4515 |
| NarI | GGCGCC | 1 cut(s) | 3775 |
| NciI | CCSGG | 1 cut(s) | 5519 |
| NcoI | CCATGG | 2 cut(s) | 3122, 5466 |
| NgoMIV | GCCGGC | 1 cut(s) | 4513 |
| NmuCI | GTSAC | 6 cut(s) | 851, 1218, 1663, 3644, 4658, 5627 |
| NsiI | ATGCAT | 2 cut(s) | 534, 680 |
| NspI | RCATGY | 8 cut(s) | 896, 997, 1463, 2312, 2453, 2539, 2980, 4212 |
| OliI | CACNNNNGTG | 1 cut(s) | 1063 |
| PaeI | GCATGC | 1 cut(s) | 2980 |
| PagI | TCATGA | 1 cut(s) | 4267 |
| PaqCI | CACCTGC | 1 cut(s) | 869 |
| PciI | ACATGT | 3 cut(s) | 2308, 2449, 2535 |
| PciSI | GCTCTTC | 1 cut(s) | 618 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3514 |
| PctI | GAATGC | 4 cut(s) | 723, 833, 3958, 5241 |
| PdiI | GCCGGC | 1 cut(s) | 4515 |
| PdmI | GAANNNNTTC | 5 cut(s) | 627, 2611, 3325, 4050, 4467 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1715 |
| PfoI | TCCNGGA | 2 cut(s) | 2263, 2680 |
| PleI | GAGTC | 8 cut(s) | 113, 1619, 1660, 1688, 3060, 3597, 4665, 5201 |
| PluTI | GGCGCC | 1 cut(s) | 3778 |
| PmaCI | CACGTG | 1 cut(s) | 3509 |
| PmlI | CACGTG | 1 cut(s) | 3509 |
| PpsI | GAGTC | 8 cut(s) | 113, 1619, 1660, 1688, 3060, 3597, 4665, 5201 |
| Ppu21I | YACGTR | 3 cut(s) | 410, 3440, 3509 |
| PpuMI | RGGWCCY | 1 cut(s) | 1540 |
| PscI | ACATGT | 3 cut(s) | 2308, 2449, 2535 |
| PshBI | ATTAAT | 1 cut(s) | 1191 |
| PsiI | TTATAA | 1 cut(s) | 1997 |
| Psp124BI | GAGCTC | 1 cut(s) | 5097 |
| Psp5II | RGGWCCY | 1 cut(s) | 1540 |
| Psp6I | CCWGG | 9 cut(s) | 982, 1267, 2236, 2263, 2680, 3922, 4278, 4394, 5587 |
| PspCI | CACGTG | 1 cut(s) | 3509 |
| PspFI | CCCAGC | 2 cut(s) | 3662, 3709 |
| PspGI | CCWGG | 9 cut(s) | 982, 1267, 2236, 2263, 2680, 3922, 4278, 4394, 5587 |
| PspPPI | RGGWCCY | 1 cut(s) | 1540 |
| PstI | CTGCAG | 2 cut(s) | 388, 3540 |
| PstNI | CAGNNNCTG | 1 cut(s) | 3329 |
| PsuI | RGATCY | 8 cut(s) | 193, 1036, 1264, 1514, 1888, 4291, 4717, 5470 |
| PvuII | CAGCTG | 5 cut(s) | 245, 3535, 3599, 3821, 3830 |
| RigI | GGCCGGCC | 1 cut(s) | 4517 |
| RsaI | GTAC | 8 cut(s) | 732, 767, 2200, 2540, 3154, 4599, 5314, 5510 |
| RsaNI | GTAC | 8 cut(s) | 731, 766, 2199, 2539, 3153, 4598, 5313, 5509 |
| RseI | CAYNNNNRTG | 5 cut(s) | 132, 1063, 1416, 1661, 2034 |
| SacI | GAGCTC | 1 cut(s) | 5097 |
| SapI | GCTCTTC | 1 cut(s) | 618 |
| SchI | GAGTC | 8 cut(s) | 113, 1619, 1660, 1688, 3061, 3598, 4666, 5201 |
| SduI | GDGCHC | 6 cut(s) | 2161, 2227, 2548, 4856, 4869, 5097 |
| SfcI | CTRYAG | 7 cut(s) | 384, 1856, 2640, 3110, 3536, 3600, 5688 |
| SfoI | GGCGCC | 1 cut(s) | 3776 |
| SinI | GGWCC | 7 cut(s) | 323, 352, 1172, 1331, 1540, 1979, 3920 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 132, 1063, 1416, 1661, 2034 |
| SmlI | CTYRAG | 7 cut(s) | 1315, 1637, 1815, 1974, 2999, 3130, 4550 |
| SmoI | CTYRAG | 7 cut(s) | 1315, 1637, 1815, 1974, 2999, 3130, 4550 |
| SnaBI | TACGTA | 1 cut(s) | 3440 |
| SphI | GCATGC | 1 cut(s) | 2980 |
| SsiI | CCGC | 5 cut(s) | 542, 1334, 2257, 2425, 4510 |
| SspDI | GGCGCC | 1 cut(s) | 3774 |
| SspMI | CTAG | 8 cut(s) | 1385, 2084, 2723, 3221, 3414, 3650, 4829, 4965 |
| SstI | GAGCTC | 1 cut(s) | 5097 |
| StyI | CCWWGG | 6 cut(s) | 2219, 3122, 3220, 3783, 4575, 5466 |
| TaaI | ACNGT | 9 cut(s) | 705, 2050, 2107, 2641, 3313, 3551, 4193, 4755, 5579 |
| TaiI | ACGT | 6 cut(s) | 412, 3442, 3511, 4665, 5146, 5541 |
| TaqI | TCGA | 8 cut(s) | 255, 794, 1393, 1906, 3298, 3480, 5251, 5386 |
| TaqII | GACCGA | 1 cut(s) | 4658 |
| TatI | WGTACW | 4 cut(s) | 2538, 3152, 5312, 5508 |
| TauI | GCSGC | 2 cut(s) | 2260, 4513 |
| TscAI | CASTG | 7 cut(s) | 891, 1816, 1854, 2112, 2301, 3162, 3316 |
| TseFI | GTSAC | 6 cut(s) | 851, 1218, 1663, 3644, 4658, 5627 |
| Tsp45I | GTSAC | 6 cut(s) | 851, 1218, 1663, 3644, 4658, 5627 |
| TspGWI | ACGGA | 5 cut(s) | 702, 870, 2735, 2771, 2950 |
| TspRI | CASTG | 7 cut(s) | 891, 1816, 1854, 2112, 2301, 3162, 3316 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1715 |
| Vha464I | CTTAAG | 2 cut(s) | 1637, 4550 |
| VpaK11BI | GGWCC | 7 cut(s) | 323, 352, 1172, 1331, 1540, 1979, 3920 |
| VspI | ATTAAT | 1 cut(s) | 1191 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3211 |
| XbaI | TCTAGA | 1 cut(s) | 4828 |
| XceI | RCATGY | 8 cut(s) | 896, 997, 1463, 2312, 2453, 2539, 2980, 4212 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1917 |
| XmaJI | CCTAGG | 1 cut(s) | 3220 |
| XmiI | GTMKAC | 2 cut(s) | 2727, 4544 |
| XmnI | GAANNNNTTC | 5 cut(s) | 627, 2611, 3325, 4050, 4467 |
| XspI | CTAG | 8 cut(s) | 1385, 2084, 2723, 3221, 3414, 3650, 4829, 4965 |
| Zsp2I | ATGCAT | 2 cut(s) | 534, 680 |