Transcription initiation factor TFIID subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G32750 AT3G19040 AT3G19040 |
| fragaria_vesca | FvH4_1g29900 FvH4_1g29900 FvH4_1g29900 FvH4_3g05980 FvH4_3g05980 FvH4_3g05980 |
| malus_domestica | MD04G1047300.v1.1 |
| prunus_persica | Prupe.1G559000_v2.0.a1 |
| pyrus_communis | pycom04g04140 |
| rosa_chinensis | RchiOBHm_Chr3g0492481 RchiOBHm_Chr5g0013481 |
| rosa_laevigata | RLG00000022765 RLG00000029713 RLG00000032019 |
| rosa_multiflora | Rmu_sc0000971.1_g000001 Rmu_sc0020049.1_g000002 |
| rosa_roxburghii | Rroxscaffold_1G00063080 Rroxscaffold_6G00392250 |
| rosa_rugosa | Rorug01G0101000 Rorug01G0101100 Rorug05G0009500 |
| rosa_samantha | Rh3AG304400 Rh3BG340200 Rh3CG337500 Rh3DG339500 Rh5BG101100 Rh5CG112900 Rh5DG099700 |
| rosa_wichuraiana | Rw3G026820 Rw5G009130 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 4700, 5457 |
| Acc36I | ACCTGC | 2 cut(s) | 1729, 3714 |
| Acc65I | GGTACC | 1 cut(s) | 4261 |
| AccB1I | GGYRCC | 3 cut(s) | 2449, 3657, 4261 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1592 |
| AccBSI | CCGCTC | 1 cut(s) | 4414 |
| AccI | GTMKAC | 2 cut(s) | 5378, 5592 |
| AccII | CGCG | 1 cut(s) | 2667 |
| AccIII | TCCGGA | 1 cut(s) | 2793 |
| AciI | CCGC | 8 cut(s) | 536, 620, 887, 2134, 2515, 2665, 4414, 5576 |
| AclWI | GGATC | 8 cut(s) | 727, 852, 1152, 1399, 3080, 3465, 4421, 5379 |
| AcoI | YGGCCR | 3 cut(s) | 3094, 3394, 4595 |
| AcuI | CTGAAG | 6 cut(s) | 2747, 3398, 3534, 3726, 5586, 5592 |
| AcvI | CACGTG | 1 cut(s) | 3392 |
| AcyI | GRCGYC | 2 cut(s) | 1240, 3658 |
| AdeI | CACNNNGTG | 1 cut(s) | 5440 |
| AflIII | ACRYGT | 3 cut(s) | 2332, 4830, 5439 |
| AjiI | CACGTC | 1 cut(s) | 5440 |
| AjnI | CCWGG | 7 cut(s) | 412, 1585, 2113, 2140, 3805, 4182, 4937 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 4820, 4852 |
| AleI | CACNNNNGTG | 1 cut(s) | 943 |
| Alw21I | GWGCWC | 5 cut(s) | 2104, 2431, 4328, 4461, 5119 |
| Alw26I | GTCTC | 7 cut(s) | 884, 1371, 2565, 2945, 4023, 4236, 4391 |
| Alw44I | GTGCAC | 1 cut(s) | 4457 |
| AlwI | GGATC | 8 cut(s) | 727, 852, 1152, 1399, 3080, 3465, 4421, 5379 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1663, 3212 |
| Ama87I | CYCGRG | 1 cut(s) | 5488 |
| Aor13HI | TCCGGA | 1 cut(s) | 2793 |
| AoxI | GGCC | 8 cut(s) | 1530, 2135, 3094, 3100, 3394, 4595, 4935, 5168 |
| ApaLI | GTGCAC | 1 cut(s) | 4457 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 448, 480, 788, 820 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 501, 1991, 3933, 4371 |
| Asp718I | GGTACC | 1 cut(s) | 4261 |
| AspA2I | CCTAGG | 1 cut(s) | 3103 |
| AspLEI | GCGC | 7 cut(s) | 1693, 2646, 2669, 2849, 3660, 5223, 5364 |
| AsuC2I | CCSGG | 6 cut(s) | 1528, 2565, 3098, 3434, 5489, 5490 |
| AsuII | TTCGAA | 1 cut(s) | 4475 |
| AvaI | CYCGRG | 1 cut(s) | 5488 |
| AvaII | GGWCC | 7 cut(s) | 95, 224, 253, 1052, 1417, 1856, 4319 |
| AvrII | CCTAGG | 1 cut(s) | 3103 |
| BaeGI | GKGCMC | 3 cut(s) | 609, 2454, 4461 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 563, 596 |
| BalI | TGGCCA | 1 cut(s) | 3396 |
| BanI | GGYRCC | 3 cut(s) | 2449, 3657, 4261 |
| BanII | GRGCYC | 2 cut(s) | 315, 1122 |
| BauI | CACGAG | 5 cut(s) | 489, 2097, 3243, 4068, 5112 |
| BbrPI | CACGTG | 1 cut(s) | 3392 |
| BbsI | GAAGAC | 3 cut(s) | 801, 2182, 4920 |
| Bbv12I | GWGCWC | 5 cut(s) | 2104, 2431, 4328, 4461, 5119 |
| BbvCI | CCTCAGC | 1 cut(s) | 1917 |
| BceAI | ACGGC | 2 cut(s) | 4610, 5208 |
| BciT130I | CCWGG | 7 cut(s) | 414, 1587, 2115, 2142, 3807, 4184, 4939 |
| BciVI | GTATCC | 4 cut(s) | 1812, 2672, 4136, 5332 |
| BclI | TGATCA | 4 cut(s) | 967, 2287, 2592, 3601 |
| BcnI | CCSGG | 6 cut(s) | 1528, 2565, 3098, 3434, 5489, 5490 |
| BcoDI | GTCTC | 7 cut(s) | 884, 1371, 2565, 2945, 4023, 4236, 4391 |
| BfmI | CTRYAG | 4 cut(s) | 1011, 2993, 3419, 3483 |
| BfoI | RGCGCY | 4 cut(s) | 2647, 3661, 5224, 5365 |
| BfuAI | ACCTGC | 2 cut(s) | 1729, 3714 |
| BfuI | GTATCC | 4 cut(s) | 1812, 2672, 4136, 5332 |
| BlnI | CCTAGG | 1 cut(s) | 3103 |
| BmcAI | AGTACT | 2 cut(s) | 2204, 4045 |
| Bme18I | GGWCC | 7 cut(s) | 95, 224, 253, 1052, 1417, 1856, 4319 |
| BmeT110I | CYCGRG | 1 cut(s) | 5488 |
| BmgBI | CACGTC | 1 cut(s) | 5440 |
| BmrI | ACTGGG | 2 cut(s) | 988, 1443 |
| BmuI | ACTGGG | 2 cut(s) | 988, 1443 |
| BoxI | GACNNNNGTC | 1 cut(s) | 876 |
| BpiI | GAAGAC | 3 cut(s) | 801, 2182, 4920 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1827, 1859, 3494, 3526 |
| BpmI | CTGGAG | 3 cut(s) | 447, 2163, 4161 |
| Bpu10I | CCTNAGC | 3 cut(s) | 1917, 3672, 4842 |
| Bpu14I | TTCGAA | 1 cut(s) | 4475 |
| BpuEI | CTTGAG | 3 cut(s) | 273, 1177, 3034 |
| BpuMI | CCSGG | 6 cut(s) | 1528, 2565, 3098, 3434, 5489, 5490 |
| BsaAI | YACGTR | 1 cut(s) | 3392 |
| BsaBI | GATNNNNATC | 3 cut(s) | 736, 3213, 4731 |
| BsaHI | GRCGYC | 2 cut(s) | 1240, 3658 |
| BsaWI | WCCGGW | 1 cut(s) | 2793 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 4020, 4050, 4817, 4847 |
| Bse118I | RCCGGY | 1 cut(s) | 2877 |
| Bse1I | ACTGG | 7 cut(s) | 430, 542, 983, 1438, 3205, 3905, 5171 |
| Bse3DI | GCAATG | 8 cut(s) | 16, 882, 1308, 1731, 2239, 2317, 2937, 4126 |
| Bse8I | GATNNNNATC | 3 cut(s) | 736, 3213, 4731 |
| BseAI | TCCGGA | 1 cut(s) | 2793 |
| BseBI | CCWGG | 7 cut(s) | 414, 1587, 2115, 2142, 3807, 4184, 4939 |
| BseJI | GATNNNNATC | 3 cut(s) | 736, 3213, 4731 |
| BseMI | GCAATG | 8 cut(s) | 16, 882, 1308, 1731, 2239, 2317, 2937, 4126 |
| BseNI | ACTGG | 7 cut(s) | 430, 542, 983, 1438, 3205, 3905, 5171 |
| BseRI | GAGGAG | 4 cut(s) | 263, 3198, 4904, 4988 |
| BseSI | GKGCMC | 3 cut(s) | 609, 2454, 4461 |
| BseYI | CCCAGC | 3 cut(s) | 91, 3545, 5209 |
| BsgI | GTGCAG | 5 cut(s) | 60, 513, 3171, 3225, 3488 |
| Bsh1236I | CGCG | 1 cut(s) | 2667 |
| Bsh1285I | CGRYCG | 1 cut(s) | 4658 |
| BshFI | GGCC | 8 cut(s) | 1532, 2137, 3096, 3102, 3396, 4597, 4937, 5170 |
| BshNI | GGYRCC | 3 cut(s) | 2449, 3657, 4261 |
| BsiEI | CGRYCG | 1 cut(s) | 4658 |
| BsiHKAI | GWGCWC | 5 cut(s) | 2104, 2431, 4328, 4461, 5119 |
| BsiHKCI | CYCGRG | 1 cut(s) | 5488 |
| BsiSI | CCGG | 7 cut(s) | 1527, 2564, 2794, 2878, 3097, 3433, 5489 |
| BslFI | GGGAC | 5 cut(s) | 237, 1065, 1111, 1430, 2343 |
| BsmAI | GTCTC | 7 cut(s) | 884, 1371, 2565, 2945, 4023, 4236, 4391 |
| BsmBI | CGTCTC | 2 cut(s) | 2945, 4023 |
| BsmFI | GGGAC | 5 cut(s) | 237, 1065, 1111, 1430, 2343 |
| BsnI | GGCC | 8 cut(s) | 1532, 2137, 3096, 3102, 3396, 4597, 4937, 5170 |
| BsoBI | CYCGRG | 1 cut(s) | 5488 |
| Bsp119I | TTCGAA | 1 cut(s) | 4475 |
| Bsp1286I | GDGCHC | 9 cut(s) | 315, 609, 1122, 2104, 2431, 2454, 4328, 4461, 5119 |
| Bsp13I | TCCGGA | 1 cut(s) | 2793 |
| Bsp1407I | TGTACA | 2 cut(s) | 3035, 3868 |
| Bsp19I | CCATGG | 3 cut(s) | 669, 3005, 5367 |
| BspACI | CCGC | 8 cut(s) | 536, 620, 887, 2134, 2515, 2665, 4414, 5576 |
| BspANI | GGCC | 8 cut(s) | 1532, 2137, 3096, 3102, 3396, 4597, 4937, 5170 |
| BspEI | TCCGGA | 1 cut(s) | 2793 |
| BspFNI | CGCG | 1 cut(s) | 2667 |
| BspHI | TCATGA | 2 cut(s) | 1807, 3604 |
| BspMAI | CTGCAG | 2 cut(s) | 2997, 3423 |
| BspMI | ACCTGC | 2 cut(s) | 1729, 3714 |
| BspPI | GGATC | 8 cut(s) | 727, 852, 1152, 1399, 3080, 3465, 4421, 5379 |
| BspT104I | TTCGAA | 1 cut(s) | 4475 |
| BspT107I | GGYRCC | 3 cut(s) | 2449, 3657, 4261 |
| BsrBI | CCGCTC | 1 cut(s) | 4414 |
| BsrDI | GCAATG | 8 cut(s) | 16, 882, 1308, 1731, 2239, 2317, 2937, 4126 |
| BsrFI | RCCGGY | 1 cut(s) | 2877 |
| BsrGI | TGTACA | 2 cut(s) | 3035, 3868 |
| BsrI | ACTGG | 7 cut(s) | 430, 542, 983, 1438, 3205, 3905, 5171 |
| BssAI | RCCGGY | 1 cut(s) | 2877 |
| BssNI | GRCGYC | 2 cut(s) | 1240, 3658 |
| BssSI | CACGAG | 5 cut(s) | 489, 2097, 3243, 4068, 5112 |
| BssT1I | CCWWGG | 6 cut(s) | 669, 3005, 3103, 3666, 4315, 5367 |
| Bst2BI | CACGAG | 5 cut(s) | 489, 2097, 3243, 4068, 5112 |
| Bst2UI | CCWGG | 7 cut(s) | 414, 1587, 2115, 2142, 3807, 4184, 4939 |
| Bst4CI | ACNGT | 7 cut(s) | 579, 1984, 2207, 2324, 3196, 4034, 4656 |
| BstACI | GRCGYC | 2 cut(s) | 1240, 3658 |
| BstAUI | TGTACA | 2 cut(s) | 3035, 3868 |
| BstBAI | YACGTR | 1 cut(s) | 3392 |
| BstBI | TTCGAA | 1 cut(s) | 4475 |
| BstC8I | GCNNGC | 8 cut(s) | 2861, 2865, 3326, 3342, 3398, 3801, 3812, 5578 |
| BstDSI | CCRYGG | 3 cut(s) | 669, 3005, 5367 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 50 |
| BstFNI | CGCG | 1 cut(s) | 2667 |
| BstH2I | RGCGCY | 4 cut(s) | 2647, 3661, 5224, 5365 |
| BstHHI | GCGC | 7 cut(s) | 1693, 2646, 2669, 2849, 3660, 5223, 5364 |
| BstMAI | GTCTC | 7 cut(s) | 884, 1371, 2565, 2945, 4023, 4236, 4391 |
| BstMCI | CGRYCG | 1 cut(s) | 4658 |
| BstNI | CCWGG | 7 cut(s) | 414, 1587, 2115, 2142, 3807, 4184, 4939 |
| BstNSI | RCATGY | 4 cut(s) | 1384, 2336, 2738, 2863 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 876 |
| BstSFI | CTRYAG | 4 cut(s) | 1011, 2993, 3419, 3483 |
| BstSLI | GKGCMC | 3 cut(s) | 609, 2454, 4461 |
| BstUI | CGCG | 1 cut(s) | 2667 |
| BstV2I | GAAGAC | 3 cut(s) | 801, 2182, 4920 |
| BstX2I | RGATCY | 4 cut(s) | 719, 844, 1391, 5371 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1295 |
| BstYI | RGATCY | 4 cut(s) | 719, 844, 1391, 5371 |
| BsuI | GTATCC | 4 cut(s) | 1812, 2672, 4136, 5332 |
| BsuRI | GGCC | 8 cut(s) | 1532, 2137, 3096, 3102, 3396, 4597, 4937, 5170 |
| BtgI | CCRYGG | 3 cut(s) | 669, 3005, 5367 |
| BtgZI | GCGATG | 2 cut(s) | 2958, 3329 |
| BtrI | CACGTC | 1 cut(s) | 5440 |
| BtsIMutI | CAGTG | 3 cut(s) | 846, 1989, 3192 |
| BveI | ACCTGC | 2 cut(s) | 1729, 3714 |
| Cac8I | GCNNGC | 8 cut(s) | 2861, 2865, 3326, 3342, 3398, 3801, 3812, 5578 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1663, 3212 |
| CciI | TCATGA | 2 cut(s) | 1807, 3604 |
| CfoI | GCGC | 7 cut(s) | 1693, 2646, 2669, 2849, 3660, 5223, 5364 |
| Cfr10I | RCCGGY | 1 cut(s) | 2877 |
| Cfr9I | CCCGGG | 1 cut(s) | 5488 |
| CseI | GACGC | 3 cut(s) | 1248, 1346, 5490 |
| CspCI | CAANNNNNGTGG | 6 cut(s) | 822, 857, 1589, 1624, 2753, 2788 |
| DinI | GGCGCC | 1 cut(s) | 3659 |
| DraIII | CACNNNGTG | 1 cut(s) | 5440 |
| EaeI | YGGCCR | 3 cut(s) | 3094, 3394, 4595 |
| EciI | GGCGGA | 1 cut(s) | 635 |
| Eco130I | CCWWGG | 6 cut(s) | 669, 3005, 3103, 3666, 4315, 5367 |
| Eco24I | GRGCYC | 2 cut(s) | 315, 1122 |
| Eco47I | GGWCC | 7 cut(s) | 95, 224, 253, 1052, 1417, 1856, 4319 |
| Eco57I | CTGAAG | 6 cut(s) | 2747, 3398, 3534, 3726, 5586, 5592 |
| Eco72I | CACGTG | 1 cut(s) | 3392 |
| Eco88I | CYCGRG | 1 cut(s) | 5488 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 50 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1052, 1417, 3100 |
| EcoRI | GAATTC | 1 cut(s) | 4216 |
| EcoRII | CCWGG | 7 cut(s) | 412, 1585, 2113, 2140, 3805, 4182, 4937 |
| EcoT14I | CCWWGG | 6 cut(s) | 669, 3005, 3103, 3666, 4315, 5367 |
| EcoT22I | ATGCAT | 1 cut(s) | 554 |
| EcoT38I | GRGCYC | 2 cut(s) | 315, 1122 |
| EgeI | GGCGCC | 1 cut(s) | 3659 |
| EheI | GGCGCC | 1 cut(s) | 3659 |
| ErhI | CCWWGG | 6 cut(s) | 669, 3005, 3103, 3666, 4315, 5367 |
| Esp3I | CGTCTC | 2 cut(s) | 2945, 4023 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 54, 86, 2856, 2888, 3646, 3678 |
| FaqI | GGGAC | 5 cut(s) | 237, 1065, 1111, 1430, 2343 |
| FauI | CCCGC | 2 cut(s) | 4407, 5569 |
| FauNDI | CATATG | 1 cut(s) | 3993 |
| FbaI | TGATCA | 4 cut(s) | 967, 2287, 2592, 3601 |
| FblI | GTMKAC | 2 cut(s) | 5378, 5592 |
| FriOI | GRGCYC | 2 cut(s) | 315, 1122 |
| GlaI | GCGC | 7 cut(s) | 1692, 2645, 2668, 2848, 3659, 5222, 5363 |
| GsaI | CCCAGC | 3 cut(s) | 95, 3549, 5213 |
| GsuI | CTGGAG | 3 cut(s) | 447, 2163, 4161 |
| HaeII | RGCGCY | 4 cut(s) | 2647, 3661, 5224, 5365 |
| HaeIII | GGCC | 8 cut(s) | 1532, 2137, 3096, 3102, 3396, 4597, 4937, 5170 |
| HapII | CCGG | 7 cut(s) | 1527, 2564, 2794, 2878, 3097, 3433, 5489 |
| HgaI | GACGC | 3 cut(s) | 1248, 1346, 5490 |
| HhaI | GCGC | 7 cut(s) | 1693, 2646, 2669, 2849, 3660, 5223, 5364 |
| Hin1I | GRCGYC | 2 cut(s) | 1240, 3658 |
| Hin6I | GCGC | 7 cut(s) | 1691, 2644, 2667, 2847, 3658, 5221, 5362 |
| HinP1I | GCGC | 7 cut(s) | 1691, 2644, 2667, 2847, 3658, 5221, 5362 |
| HincII | GTYRAC | 2 cut(s) | 105, 4362 |
| HindII | GTYRAC | 2 cut(s) | 105, 4362 |
| HpaI | GTTAAC | 1 cut(s) | 105 |
| HpaII | CCGG | 7 cut(s) | 1527, 2564, 2794, 2878, 3097, 3433, 5489 |
| Hpy166II | GTNNAC | 7 cut(s) | 105, 1508, 3038, 4362, 4459, 5379, 5593 |
| Hpy8I | GTNNAC | 7 cut(s) | 105, 1508, 3038, 4362, 4459, 5379, 5593 |
| Hpy99I | CGWCG | 2 cut(s) | 5441, 5555 |
| HpyCH4III | ACNGT | 7 cut(s) | 579, 1984, 2207, 2324, 3196, 4034, 4656 |
| HpyCH4IV | ACGT | 5 cut(s) | 2506, 3391, 4708, 4830, 5439 |
| HpySE526I | ACGT | 5 cut(s) | 2506, 3391, 4708, 4830, 5439 |
| Hsp92I | GRCGYC | 2 cut(s) | 1240, 3658 |
| HspAI | GCGC | 7 cut(s) | 1691, 2644, 2667, 2847, 3658, 5221, 5362 |
| KasI | GGCGCC | 1 cut(s) | 3657 |
| KflI | GGGWCCC | 1 cut(s) | 1417 |
| Kpn2I | TCCGGA | 1 cut(s) | 2793 |
| KpnI | GGTACC | 1 cut(s) | 4265 |
| Ksp22I | TGATCA | 4 cut(s) | 967, 2287, 2592, 3601 |
| KspAI | GTTAAC | 1 cut(s) | 105 |
| MaeII | ACGT | 5 cut(s) | 2506, 3391, 4708, 4830, 5439 |
| MbiI | CCGCTC | 1 cut(s) | 4414 |
| MflI | RGATCY | 4 cut(s) | 719, 844, 1391, 5371 |
| MhlI | GDGCHC | 9 cut(s) | 315, 609, 1122, 2104, 2431, 2454, 4328, 4461, 5119 |
| MlsI | TGGCCA | 1 cut(s) | 3396 |
| MluNI | TGGCCA | 1 cut(s) | 3396 |
| Mly113I | GGCGCC | 1 cut(s) | 3658 |
| MmeI | TCCRAC | 3 cut(s) | 2784, 3636, 3889 |
| Mox20I | TGGCCA | 1 cut(s) | 3396 |
| Mph1103I | ATGCAT | 1 cut(s) | 554 |
| MroI | TCCGGA | 1 cut(s) | 2793 |
| MroXI | GAANNNNTTC | 4 cut(s) | 501, 1991, 3933, 4371 |
| MscI | TGGCCA | 1 cut(s) | 3396 |
| MslI | CAYNNNNRTG | 6 cut(s) | 943, 1293, 1332, 1538, 1812, 1911 |
| Msp20I | TGGCCA | 1 cut(s) | 3396 |
| MspA1I | CMGCKG | 5 cut(s) | 538, 2354, 3418, 3704, 3713 |
| MspI | CCGG | 7 cut(s) | 1527, 2564, 2794, 2878, 3097, 3433, 5489 |
| MvaI | CCWGG | 7 cut(s) | 414, 1587, 2115, 2142, 3807, 4184, 4939 |
| MvnI | CGCG | 1 cut(s) | 2667 |
| NarI | GGCGCC | 1 cut(s) | 3658 |
| NciI | CCSGG | 6 cut(s) | 1528, 2565, 3098, 3434, 5489, 5490 |
| NcoI | CCATGG | 3 cut(s) | 669, 3005, 5367 |
| NdeI | CATATG | 1 cut(s) | 3993 |
| NmeAIII | GCCGAG | 1 cut(s) | 2645 |
| NmuCI | GTSAC | 6 cut(s) | 1019, 1334, 1540, 3506, 4417, 5528 |
| NsiI | ATGCAT | 1 cut(s) | 554 |
| NspI | RCATGY | 4 cut(s) | 1384, 2336, 2738, 2863 |
| NspV | TTCGAA | 1 cut(s) | 4475 |
| OliI | CACNNNNGTG | 1 cut(s) | 943 |
| PaeI | GCATGC | 1 cut(s) | 2863 |
| PagI | TCATGA | 2 cut(s) | 1807, 3604 |
| PciI | ACATGT | 1 cut(s) | 2332 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3397 |
| PdmI | GAANNNNTTC | 4 cut(s) | 501, 1991, 3933, 4371 |
| PflFI | GACNNNGTC | 1 cut(s) | 4034 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1592 |
| PfoI | TCCNGGA | 2 cut(s) | 2140, 2563 |
| PluTI | GGCGCC | 1 cut(s) | 3661 |
| PmaCI | CACGTG | 1 cut(s) | 3392 |
| PmlI | CACGTG | 1 cut(s) | 3392 |
| Ppu21I | YACGTR | 1 cut(s) | 3392 |
| PpuMI | RGGWCCY | 2 cut(s) | 1052, 1417 |
| PscI | ACATGT | 1 cut(s) | 2332 |
| PshAI | GACNNNNGTC | 1 cut(s) | 876 |
| PsiI | TTATAA | 2 cut(s) | 4700, 5457 |
| Psp5II | RGGWCCY | 2 cut(s) | 1052, 1417 |
| Psp6I | CCWGG | 7 cut(s) | 412, 1585, 2113, 2140, 3805, 4182, 4937 |
| PspCI | CACGTG | 1 cut(s) | 3392 |
| PspFI | CCCAGC | 3 cut(s) | 91, 3545, 5209 |
| PspGI | CCWGG | 7 cut(s) | 412, 1585, 2113, 2140, 3805, 4182, 4937 |
| PspPPI | RGGWCCY | 2 cut(s) | 1052, 1417 |
| PstI | CTGCAG | 2 cut(s) | 2997, 3423 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1663, 3212 |
| PsuI | RGATCY | 4 cut(s) | 719, 844, 1391, 5371 |
| PsyI | GACNNNGTC | 1 cut(s) | 4034 |
| PvuII | CAGCTG | 4 cut(s) | 2354, 3418, 3704, 3713 |
| RseI | CAYNNNNRTG | 6 cut(s) | 943, 1293, 1332, 1538, 1812, 1911 |
| ScaI | AGTACT | 2 cut(s) | 2204, 4045 |
| SduI | GDGCHC | 9 cut(s) | 315, 609, 1122, 2104, 2431, 2454, 4328, 4461, 5119 |
| SfcI | CTRYAG | 4 cut(s) | 1011, 2993, 3419, 3483 |
| SfoI | GGCGCC | 1 cut(s) | 3659 |
| SfuI | TTCGAA | 1 cut(s) | 4475 |
| SinI | GGWCC | 7 cut(s) | 95, 224, 253, 1052, 1417, 1856, 4319 |
| SmaI | CCCGGG | 1 cut(s) | 5490 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 943, 1293, 1332, 1538, 1812, 1911 |
| SmlI | CTYRAG | 3 cut(s) | 288, 1192, 3013 |
| SmoI | CTYRAG | 3 cut(s) | 288, 1192, 3013 |
| SphI | GCATGC | 1 cut(s) | 2863 |
| SsiI | CCGC | 8 cut(s) | 536, 620, 887, 2134, 2515, 2665, 4414, 5576 |
| SspDI | GGCGCC | 1 cut(s) | 3657 |
| SspI | AATATT | 4 cut(s) | 278, 437, 1108, 3055 |
| StyI | CCWWGG | 6 cut(s) | 669, 3005, 3103, 3666, 4315, 5367 |
| TaaI | ACNGT | 7 cut(s) | 579, 1984, 2207, 2324, 3196, 4034, 4656 |
| TaiI | ACGT | 5 cut(s) | 2509, 3394, 4711, 4833, 5442 |
| TaqI | TCGA | 4 cut(s) | 309, 3181, 4475, 5287 |
| TaqII | GACCGA | 1 cut(s) | 5231 |
| TatI | WGTACW | 6 cut(s) | 2202, 2258, 3035, 3868, 4043, 5409 |
| TauI | GCSGC | 1 cut(s) | 2137 |
| TscAI | CASTG | 3 cut(s) | 846, 1989, 3199 |
| TseFI | GTSAC | 6 cut(s) | 1019, 1334, 1540, 3506, 4417, 5528 |
| Tsp45I | GTSAC | 6 cut(s) | 1019, 1334, 1540, 3506, 4417, 5528 |
| TspGWI | ACGGA | 4 cut(s) | 2618, 2901, 4161, 4918 |
| TspMI | CCCGGG | 1 cut(s) | 5488 |
| TspRI | CASTG | 3 cut(s) | 846, 1989, 3199 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4034 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1592 |
| VneI | GTGCAC | 1 cut(s) | 4457 |
| VpaK11BI | GGWCC | 7 cut(s) | 95, 224, 253, 1052, 1417, 1856, 4319 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 50 |
| XbaI | TCTAGA | 2 cut(s) | 1268, 3532 |
| XceI | RCATGY | 4 cut(s) | 1384, 2336, 2738, 2863 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1794 |
| XmaI | CCCGGG | 1 cut(s) | 5488 |
| XmaJI | CCTAGG | 1 cut(s) | 3103 |
| XmiI | GTMKAC | 2 cut(s) | 5378, 5592 |
| XmnI | GAANNNNTTC | 4 cut(s) | 501, 1991, 3933, 4371 |
| ZrmI | AGTACT | 2 cut(s) | 2204, 4045 |
| Zsp2I | ATGCAT | 1 cut(s) | 554 |