Rmu_sc0000971.1_g000001

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000971.1
OG0004130
Physical Location & Seq
Forward (+)
128 .. 12167
12040 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000971.1_g000001.1.cds

Sequence Viewer

Length: 4911 bp
atggatacctctgatattgttgaagacgatgaagaggcattcctaaaaggaactggtgacggagttccatctttaaaacaggcaggtgcagtcaaacatgatatctcagaattcaataacgatgacttcgacattgcaaaatttgactttgtaaaagaggatgcccctgtggatttgtgggatgggccaggaaagagcatgtgcctcatcgcagaaccgatgaaagaggatagcattgtggagccttctatggaaacaaaatcacctttgtgttctacattttaccctcttgatcagcacgactgggaagaggaaattctttggggaaactctcctgtaacgactaacaagtttgttgaaagttgtgaaatttctggacctgatgaagcttcaattaatagtgaaactgaacctgatactgggtcacaaaagattcagacacactcccaaaaagaacttgatgagaaggatcctggtcttacgctacacagctactctactctgttggagcctttcggctcaagaaatctgtcaggaccgccatgtcccagtttatcagaaagcagataccatccccaacttttaaggctagaatctcgatatgaagtggatgatcttgtggatggtagagtggagaattctggtgagaagcttcataagggacatgctgtgaggcatttcagcaaacttagctcaaaaaacagagacatactggaaggatcttggttagatcaaataatttgggacccagatatacccattaggaagccaaagcttatccttgatcttgaagatgagcaaatgctttttgagattttggataacaaagactctgaacatcttaagcttcattcaggggcgatgattgtgactcgccctttaaagtcaagcaatggggactctttggagctgccaaatcatggaggtcaatttggttggcgatatgttgctaacgacaaacactattcaaacaggaaaacttctcagcaactaaaatcaaattctaaaaaacgcactgctcaaggcataaagatttatcactcacaacctgcactgatgctacagacgatgaagttgaagttgagcaacaaggatcttgctaattttcatcgaccaaaagctttgtggtatccccatgatattcaaatagctgtaaaagaacaagggaagctgtccactcaaggaccaatgagaattattataaagagcttgggtggcaaaggcagtaaggttcatgtaggtgctgaggaaactgtttcttgtgttaaagcaaaagcttcaaaaaagctagactttaagccatccgaaacagtgaagatgttttacttggggagggaacttgaagatgataaaacacttgctgctcaaaatgttcaaccaaactctttggttcatcttgttcgtacaaaaatatgtttgttgccaagggcacaaaagcttcctggtgagaataaatctttgcggcctcctggagcatttaagaagaaatctgacctttcagtgaaagatggacacgtctttctggttgagtattgtgaggaaagacctttacttttgagcaatgttggtatgggtgcaagattatgcacttattatcacaaatcagccccagatgatcaagctggttcgttgttgcgtaatgaaaacagcagcttgggacatgtgatttcgctaaaccctgctgataaatcaccttatctgggagatacgaaagctgggtgtcgtcaatcatctctggaaacaaacatgtacagagcacctgtattttctcataaggtgccgtcaactgattatctattagttcgctctgcaaagggaaagctttcaattagacgcatagacaggctaactgtagtcggacagcaggaacctctcatggaggtaatgtctcctggaaccaagaatcttcaaaattacatgattagcaggctcctagtctacatttgccgtgagttccgtgctgccgaaaagcgccattttcttccttgcatccgtgcagaagagttactttcacaatttccttacctaactgatacctttattaaaaagaagctgaaggaacttgcgaatttgcagaagggatcaaatggaagatggatttgggttaagaagcgcaatttccggattttctcagaggatgaattacggaatatggtgaagccagaagaggtatgtgcctatgaaagcatgcaagctggtctttataggctcaagcatttaggaattactgaaacacatccttcagccatatcatctgcaatgagtcgtctccctgatgaagcaattactctggctgctgcatcccacattgaaagggaactacagattactccatggaacttgagtagcaattttgtagcctgtacactgggaaaagaaactattgagcgtttggaaatatctggtgtgggtgatccatctggtaggggcctagggtttagttatgttcgtgctactccgaaagcatcaatgtcaagtgctgttgtgaagaagaaatctgctgctggtcgaggaggttccactgttaccggaacagattctgatttacgcagattaagcatggaagctgcacgagaggttcttcttaaatttggcgtttctgatgaactgattgcgaggcagactagatggcatcggattgcaatgatacgtaagctatcaagtgagcaagctgcatctggggtcaaagtcgatgcaaatactatcagcaaatatgcacgtggacagcgtatgtcctttcttcagctgcagcagcagaaccgtgagaagtgtcaagaaatttgggaacgacaagttcagagtctttcagctgtagatggtgatgaaaatgaaagcgattctgaaggaaataatagtgacctagattcctttgctggggatttagaaaacctgcttgatgcagaagaatgtgaagaagggctagggggtaaacatgaatccaactacgataaggcagatggtgttaaagggcttaaaatgagaaggcgcccctccttggctcaggcagaagaggaaaatgaagatgaagcagctgaagcagctgaattatgcaggttgcttatggatgatgatgaaactgagaggaagagaaaaaagaaaacaagagttgtgggggatgaagctcgtttgggtccaggctcccgaacaggttatgggtttgagaatgcagatagggtaaagcaaatcattgatgcaggacaacctgatggttcctatacttcgaaagagaatccaattggagacgcaaaagtgatggaaaatcttcttaaaagaaacaagactggtaaactcaaaggaataaaacagaatgatgctgcgcctttgggtctaacgaacaaaaaactgaaaatatcaggagatggggtcaacaaggtgtttaaggagaagaaatcagcaagagacagttttgtctgtggagcatgtggtcagcttggacacatgaggacaaacaagaactgccccaagtatggagaagatcatgaaacacacctggaagctccagatctggagaaagcatctgggaagtccactaccctgaattcatctaatcagtctcagcagaaaactactgcaaagaagctgaataaaagtgcagctaaaattgccagggttgaagcttctgaagttgaaaccccaaaggttctcccagtgatattcaaatatgggtcaacagaaaaggttcctgataaacaggctcctggagagactgagagttctgagcggccggccacatctgatcctgaaactgggaagtctactcttaaggttaataaaataataatttccaaggcaaaaaaacctgaaaatgtaccagttgaaccacataaaccccctatagttatacggcctccgactgatatagtcaggagtcatgttgaaccacagaagccaaccattgttatacgaccaccagcaaatacagacagagatctggtggaatctgaaaggccctctactggtaaacagtcatcaatggaagcacataaagagcaacagcataagaaaatcataattaagcgtcccaaagaagttattgatctagatcaagtcagtcaggatgggagcactcgtgatgagcacaggaaaactaaaagaattgttgaattgacaagttctggaaagcacaggaagcaggataacacaaattttgcaaaggaagcagcaaaaaagaaagctagagatgataggagattgtgggaggagcaggaaaaacgaagaaatgaagagagattgagagaagagagggacagaaggttttatgaagaggaaatgaggatgatagaggagaaagaaagagtagtggagctcaggcgatatgaagcagccatcagacaagagagggaggaagaagaacgtcagaaagcaaggaacaagaagacgaagaaacggcctgcgataagagaggactatttagaggactcacagacaagaaggtttgataatagaatgccagaaagagatcgaggcaccaaaaggaggccagttgttgagttgggaaggtatggtggagaatctgccccaagtacaaagcgtcgtagaggaggagaggttggattggcaaacatcttggagcatattgtagaaaccctcaaagatcgaattgaagtttcgtatctttttcttaaacctgtgtccaaaaaggaagctccagattacctgaactttgtagagcgccccatggatctctcaacaattcgggagaaggtaaggaaaatggagtacaagagccgggagcaattcaggcatgacgttgctcagatcaccatcaatgcccacttatataatgacggtcgtaatccaggtatccctccccttgcagatcaacttttagagatctgtgactatatgctgattgagaatgatgaagcattgactgaagctgaagcaggcattgaatctgtagataactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

1636

Amino Acids

184.63

Weight (kDa)

8.43

Isoelectric Point (pI)

48.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1202
AarI CACCTGC 1 cut(s) 74
AasI GACNNNNNNGTC 2 cut(s) 543, 3407
Acc36I ACCTGC 4 cut(s) 74, 1057, 2898, 3042
AccB1I GGYRCC 3 cut(s) 1777, 2985, 4466
AccB7I CCANNNNNTGG 1 cut(s) 920
AccBSI CCGCTC 1 cut(s) 3721
AccI GTMKAC 2 cut(s) 1938, 3755
AccIII TCCGGA 1 cut(s) 2121
AciI CCGC 3 cut(s) 539, 1462, 3721
AclWI GGATC 8 cut(s) 464, 477, 727, 1101, 2089, 2408, 3731, 4689
AcoI YGGCCR 2 cut(s) 3722, 3726
AcuI CTGAAG 8 cut(s) 2075, 2226, 2726, 2862, 3054, 3642, 4896, 4902
AcvI CACGTG 1 cut(s) 2720
AcyI GRCGYC 1 cut(s) 2986
AfaI GTAC 6 cut(s) 1405, 1751, 2365, 3810, 4525, 4721
AfiI CCNNNNNNNGG 9 cut(s) 419, 920, 1700, 2874, 2995, 3467, 3746, 3956, 4476
AflII CTTAAG 2 cut(s) 842, 3761
AflIII ACRYGT 3 cut(s) 1513, 1660, 1746
AjiI CACGTC 1 cut(s) 1516
AjuI GAANNNNNNNTTGG 2 cut(s) 2083, 2115
AleI CACNNNNGTG 1 cut(s) 268
Alw21I GWGCWC 4 cut(s) 1759, 4067, 4080, 4308
Alw26I GTCTC 7 cut(s) 699, 1893, 2273, 3234, 3393, 3558, 3698
AlwI GGATC 8 cut(s) 464, 477, 727, 1101, 2089, 2408, 3731, 4689
AlwNI CAGNNNCTG 1 cut(s) 2540
Aor13HI TCCGGA 1 cut(s) 2121
AoxI GGCC 9 cut(s) 185, 1463, 2428, 3722, 3726, 3845, 3947, 4388, 4478
AseI ATTAAT 1 cut(s) 396
Asp700I GAANNNNTTC 4 cut(s) 1822, 2536, 3261, 3678
AspA2I CCTAGG 1 cut(s) 2431
AspLEI GCGC 5 cut(s) 1974, 2115, 2988, 3319, 4674
AspS9I GGNCC 8 cut(s) 185, 377, 536, 745, 1184, 2428, 3131, 3948
AsuC2I CCSGG 1 cut(s) 4730
AsuHPI GGTGA 9 cut(s) 68, 255, 656, 1457, 1683, 2167, 2423, 2831, 4753
AsuII TTCGAA 1 cut(s) 3221
AvaII GGWCC 5 cut(s) 377, 536, 745, 1184, 3131
AvrII CCTAGG 1 cut(s) 2431
BaeGI GKGCMC 1 cut(s) 1432
BamHI GGATCC 1 cut(s) 469
BanI GGYRCC 3 cut(s) 1777, 2985, 4466
BanII GRGCYC 1 cut(s) 4308
BarI GAAGNNNNNNTAC 2 cut(s) 1307, 1339
BauI CACGAG 2 cut(s) 2571, 4068
BbrPI CACGTG 1 cut(s) 2720
BbsI GAAGAC 2 cut(s) 30, 4382
Bbv12I GWGCWC 4 cut(s) 1759, 4067, 4080, 4308
BbvCI CCTCAGC 1 cut(s) 1245
BceAI ACGGC 4 cut(s) 1765, 1932, 3860, 4403
BciVI GTATCC 2 cut(s) 1140, 4814
BclI TGATCA 2 cut(s) 292, 1615
BcnI CCSGG 1 cut(s) 4730
BcoDI GTCTC 7 cut(s) 699, 1893, 2273, 3234, 3393, 3558, 3698
BfaI CTAG 9 cut(s) 590, 1289, 1934, 2432, 2625, 2861, 2921, 4040, 4176
BfmI CTRYAG 7 cut(s) 1061, 1851, 2321, 2747, 2811, 3834, 4899
BfoI RGCGCY 3 cut(s) 1975, 2989, 4675
BfrI CTTAAG 2 cut(s) 842, 3761
BfuAI ACCTGC 4 cut(s) 74, 1057, 2898, 3042
BfuI GTATCC 2 cut(s) 1140, 4814
BglII AGATCT 3 cut(s) 3502, 3928, 4833
BlnI CCTAGG 1 cut(s) 2431
Bme18I GGWCC 5 cut(s) 377, 536, 745, 1184, 3131
BmgBI CACGTC 1 cut(s) 1516
BmgT120I GGNCC 8 cut(s) 185, 377, 536, 745, 1184, 2428, 3131, 3948
BmrI ACTGGG 6 cut(s) 313, 429, 543, 2378, 3641, 3756
BmuI ACTGGG 6 cut(s) 313, 429, 543, 2378, 3641, 3756
BpiI GAAGAC 2 cut(s) 30, 4382
BpmI CTGGAG 5 cut(s) 1491, 3483, 3527, 3720, 4632
Bpu10I CCTNAGC 3 cut(s) 1245, 3000, 4307
Bpu14I TTCGAA 1 cut(s) 3221
BpuEI CTTGAG 5 cut(s) 505, 1005, 1164, 2195, 2362
BpuMI CCSGG 1 cut(s) 4730
BsaAI YACGTR 2 cut(s) 2651, 2720
BsaBI GATNNNNATC 2 cut(s) 4041, 4763
BsaHI GRCGYC 1 cut(s) 2986
BsaJI CCNNGG 7 cut(s) 1424, 2333, 2431, 2994, 3606, 3786, 4677
BsaWI WCCGGW 2 cut(s) 2121, 2528
BsaXI ACNNNNNCTCC 8 cut(s) 1871, 1901, 3348, 3378, 4054, 4084, 4533, 4563
Bsc4I CCNNNNNNNGG 9 cut(s) 419, 920, 1700, 2874, 2995, 3467, 3746, 3956, 4476
Bse118I RCCGGY 1 cut(s) 3724
Bse3DI GCAATG 5 cut(s) 132, 898, 1567, 2265, 2649
Bse8I GATNNNNATC 2 cut(s) 4041, 4763
BseAI TCCGGA 1 cut(s) 2121
BseDI CCNNGG 7 cut(s) 1424, 2333, 2431, 2994, 3606, 3786, 4677
BseJI GATNNNNATC 2 cut(s) 4041, 4763
BseLI CCNNNNNNNGG 9 cut(s) 419, 920, 1700, 2874, 2995, 3467, 3746, 3956, 4476
BseMI GCAATG 5 cut(s) 132, 898, 1567, 2265, 2649
BseRI GAGGAG 5 cut(s) 2526, 4214, 4298, 4554, 4557
BseSI GKGCMC 1 cut(s) 1432
BseX3I CGGCCG 1 cut(s) 3722
BseYI CCCAGC 2 cut(s) 1715, 2873
BsgI GTGCAG 5 cut(s) 108, 1035, 2016, 2553, 3612
Bsh1285I CGRYCG 2 cut(s) 3725, 4792
BshFI GGCC 9 cut(s) 187, 1465, 2430, 3724, 3728, 3847, 3949, 4390, 4480
BshNI GGYRCC 3 cut(s) 1777, 2985, 4466
BsiEI CGRYCG 2 cut(s) 3725, 4792
BsiHKAI GWGCWC 4 cut(s) 1759, 4067, 4080, 4308
BsiSI CCGG 4 cut(s) 2122, 2529, 3725, 4729
BslFI GGGAC 7 cut(s) 531, 675, 758, 911, 1671, 4005, 4259
BslI CCNNNNNNNGG 9 cut(s) 419, 920, 1700, 2874, 2995, 3467, 3746, 3956, 4476
BsmAI GTCTC 7 cut(s) 699, 1893, 2273, 3234, 3393, 3558, 3698
BsmBI CGTCTC 2 cut(s) 2273, 3234
BsmFI GGGAC 7 cut(s) 531, 675, 758, 911, 1671, 4005, 4259
BsmI GAATGC 3 cut(s) 38, 3169, 4452
BsnI GGCC 9 cut(s) 187, 1465, 2430, 3724, 3728, 3847, 3949, 4390, 4480
Bsp119I TTCGAA 1 cut(s) 3221
Bsp1286I GDGCHC 5 cut(s) 1432, 1759, 4067, 4080, 4308
Bsp13I TCCGGA 1 cut(s) 2121
Bsp1407I TGTACA 2 cut(s) 1749, 2363
Bsp19I CCATGG 2 cut(s) 2333, 4677
BspACI CCGC 3 cut(s) 539, 1462, 3721
BspANI GGCC 9 cut(s) 187, 1465, 2430, 3724, 3728, 3847, 3949, 4390, 4480
BspEI TCCGGA 1 cut(s) 2121
BspHI TCATGA 1 cut(s) 3478
BspMAI CTGCAG 1 cut(s) 2751
BspMI ACCTGC 4 cut(s) 74, 1057, 2898, 3042
BspPI GGATC 8 cut(s) 464, 477, 727, 1101, 2089, 2408, 3731, 4689
BspT104I TTCGAA 1 cut(s) 3221
BspT107I GGYRCC 3 cut(s) 1777, 2985, 4466
BspTI CTTAAG 2 cut(s) 842, 3761
BsrBI CCGCTC 1 cut(s) 3721
BsrDI GCAATG 5 cut(s) 132, 898, 1567, 2265, 2649
BsrFI RCCGGY 1 cut(s) 3724
BsrGI TGTACA 2 cut(s) 1749, 2363
BssAI RCCGGY 1 cut(s) 3724
BssECI CCNNGG 7 cut(s) 1424, 2333, 2431, 2994, 3606, 3786, 4677
BssNI GRCGYC 1 cut(s) 2986
BssSI CACGAG 2 cut(s) 2571, 4068
BssT1I CCWWGG 6 cut(s) 1424, 2333, 2431, 2994, 3786, 4677
Bst2BI CACGAG 2 cut(s) 2571, 4068
Bst4CI ACNGT 8 cut(s) 1255, 1312, 1852, 2524, 2762, 3404, 3966, 4790
Bst6I CTCTTC 9 cut(s) 27, 303, 1995, 2160, 3003, 3080, 4218, 4233, 4257
BstACI GRCGYC 1 cut(s) 2986
BstAFI CTTAAG 2 cut(s) 842, 3761
BstAUI TGTACA 2 cut(s) 1749, 2363
BstBAI YACGTR 2 cut(s) 2651, 2720
BstBI TTCGAA 1 cut(s) 3221
BstC8I GCNNGC 7 cut(s) 1928, 2189, 2193, 2670, 3726, 4392, 4888
BstDSI CCRYGG 2 cut(s) 2333, 4677
BstH2I RGCGCY 3 cut(s) 1975, 2989, 4675
BstHHI GCGC 5 cut(s) 1974, 2115, 2988, 3319, 4674
BstMAI GTCTC 7 cut(s) 699, 1893, 2273, 3234, 3393, 3558, 3698
BstMCI CGRYCG 2 cut(s) 3725, 4792
BstNSI RCATGY 6 cut(s) 202, 668, 1664, 1750, 2191, 3423
BstSFI CTRYAG 7 cut(s) 1061, 1851, 2321, 2747, 2811, 3834, 4899
BstSLI GKGCMC 1 cut(s) 1432
BstSNI TACGTA 1 cut(s) 2651
BstV2I GAAGAC 2 cut(s) 30, 4382
BstX2I RGATCY 7 cut(s) 469, 719, 1093, 3502, 3928, 4681, 4833
BstYI RGATCY 7 cut(s) 469, 719, 1093, 3502, 3928, 4681, 4833
BstZI CGGCCG 1 cut(s) 3722
BsuI GTATCC 2 cut(s) 1140, 4814
BsuRI GGCC 9 cut(s) 187, 1465, 2430, 3724, 3728, 3847, 3949, 4390, 4480
BtgI CCRYGG 2 cut(s) 2333, 4677
BtgZI GCGATG 2 cut(s) 193, 875
BtrI CACGTC 1 cut(s) 1516
BtsI GCAGTG 1 cut(s) 1014
BtsIMutI CAGTG 7 cut(s) 1014, 1052, 1317, 1506, 2366, 2520, 3654
BveI ACCTGC 4 cut(s) 74, 1057, 2898, 3042
Cac8I GCNNGC 7 cut(s) 1928, 2189, 2193, 2670, 3726, 4392, 4888
CaiI CAGNNNCTG 1 cut(s) 2540
CciI TCATGA 1 cut(s) 3478
CfoI GCGC 5 cut(s) 1974, 2115, 2988, 3319, 4674
Cfr10I RCCGGY 1 cut(s) 3724
Cfr13I GGNCC 8 cut(s) 185, 377, 536, 745, 1184, 2428, 3131, 3948
CseI GACGC 4 cut(s) 1842, 3251, 4007, 4520
Csp6I GTAC 6 cut(s) 1404, 1750, 2364, 3809, 4524, 4720
CspCI CAANNNNNGTGG 2 cut(s) 3090, 3125
CviQI GTAC 6 cut(s) 1404, 1750, 2364, 3809, 4524, 4720
DinI GGCGCC 1 cut(s) 2987
DraI TTTAAA 2 cut(s) 75, 882
DrdI GACNNNNNNGTC 2 cut(s) 543, 3407
DseDI GACNNNNNNGTC 2 cut(s) 543, 3407
EaeI YGGCCR 2 cut(s) 3722, 3726
EagI CGGCCG 1 cut(s) 3722
Eam1104I CTCTTC 9 cut(s) 27, 303, 1995, 2160, 3003, 3080, 4218, 4233, 4257
EarI CTCTTC 9 cut(s) 27, 303, 1995, 2160, 3003, 3080, 4218, 4233, 4257
Ecl136II GAGCTC 1 cut(s) 4306
EclXI CGGCCG 1 cut(s) 3722
Eco105I TACGTA 1 cut(s) 2651
Eco130I CCWWGG 6 cut(s) 1424, 2333, 2431, 2994, 3786, 4677
Eco24I GRGCYC 1 cut(s) 4308
Eco32I GATATC 1 cut(s) 103
Eco47I GGWCC 5 cut(s) 377, 536, 745, 1184, 3131
Eco52I CGGCCG 1 cut(s) 3722
Eco53kI GAGCTC 1 cut(s) 4306
Eco57I CTGAAG 8 cut(s) 2075, 2226, 2726, 2862, 3054, 3642, 4896, 4902
Eco72I CACGTG 1 cut(s) 2720
EcoICRI GAGCTC 1 cut(s) 4306
EcoO109I RGGNCCY 3 cut(s) 745, 2428, 3948
EcoRI GAATTC 3 cut(s) 110, 637, 3538
EcoRV GATATC 1 cut(s) 103
EcoT14I CCWWGG 6 cut(s) 1424, 2333, 2431, 2994, 3786, 4677
EcoT38I GRGCYC 1 cut(s) 4308
EgeI GGCGCC 1 cut(s) 2987
EheI GGCGCC 1 cut(s) 2987
ErhI CCWWGG 6 cut(s) 1424, 2333, 2431, 2994, 3786, 4677
Esp3I CGTCTC 2 cut(s) 2273, 3234
FalI AAGNNNNNCTT 6 cut(s) 1277, 1309, 1992, 2024, 2184, 2216
FaqI GGGAC 7 cut(s) 531, 675, 758, 911, 1671, 4005, 4259
FbaI TGATCA 2 cut(s) 292, 1615
FblI GTMKAC 2 cut(s) 1938, 3755
FriOI GRGCYC 1 cut(s) 4308
FseI GGCCGGCC 1 cut(s) 3728
FspBI CTAG 9 cut(s) 590, 1289, 1934, 2432, 2625, 2861, 2921, 4040, 4176
GlaI GCGC 5 cut(s) 1973, 2114, 2987, 3318, 4673
GsaI CCCAGC 2 cut(s) 1719, 2877
GsuI CTGGAG 5 cut(s) 1491, 3483, 3527, 3720, 4632
HaeII RGCGCY 3 cut(s) 1975, 2989, 4675
HaeIII GGCC 9 cut(s) 187, 1465, 2430, 3724, 3728, 3847, 3949, 4390, 4480
HapII CCGG 4 cut(s) 2122, 2529, 3725, 4729
HgaI GACGC 4 cut(s) 1842, 3251, 4007, 4520
HhaI GCGC 5 cut(s) 1974, 2115, 2988, 3319, 4674
Hin1I GRCGYC 1 cut(s) 2986
Hin6I GCGC 5 cut(s) 1972, 2113, 2986, 3317, 4672
HinP1I GCGC 5 cut(s) 1972, 2113, 2986, 3317, 4672
HincII GTYRAC 3 cut(s) 1785, 3367, 3669
HindII GTYRAC 3 cut(s) 1785, 3367, 3669
HindIII AAGCTT 9 cut(s) 387, 650, 773, 845, 1119, 1275, 1436, 1820, 3615
HpaII CCGG 4 cut(s) 2122, 2529, 3725, 4729
HphI GGTGA 9 cut(s) 68, 255, 656, 1457, 1683, 2167, 2423, 2831, 4753
Hpy99I CGWCG 1 cut(s) 4536
HpyCH4III ACNGT 8 cut(s) 1255, 1312, 1852, 2524, 2762, 3404, 3966, 4790
HpyCH4IV ACGT 5 cut(s) 1515, 2650, 2719, 4354, 4749
HpySE526I ACGT 5 cut(s) 1515, 2650, 2719, 4354, 4749
Hsp92I GRCGYC 1 cut(s) 2986
HspAI GCGC 5 cut(s) 1972, 2113, 2986, 3317, 4672
KasI GGCGCC 1 cut(s) 2985
KflI GGGWCCC 1 cut(s) 745
Kpn2I TCCGGA 1 cut(s) 2121
KroI GCCGGC 1 cut(s) 3724
KroNI GCCGGC 1 cut(s) 3726
Ksp22I TGATCA 2 cut(s) 292, 1615
MaeI CTAG 9 cut(s) 590, 1289, 1934, 2432, 2625, 2861, 2921, 4040, 4176
MaeII ACGT 5 cut(s) 1515, 2650, 2719, 4354, 4749
MaeIII GTNAC 8 cut(s) 56, 337, 423, 868, 2004, 2524, 2855, 4838
MbiI CCGCTC 1 cut(s) 3721
MfeI CAATTG 1 cut(s) 3234
MflI RGATCY 7 cut(s) 469, 719, 1093, 3502, 3928, 4681, 4833
MhlI GDGCHC 5 cut(s) 1432, 1759, 4067, 4080, 4308
Mly113I GGCGCC 1 cut(s) 2986
MlyI GAGTC 7 cut(s) 824, 865, 893, 2272, 2809, 3877, 4412
MmeI TCCRAC 5 cut(s) 486, 1837, 2964, 3875, 4531
MroI TCCGGA 1 cut(s) 2121
MroNI GCCGGC 1 cut(s) 3724
MroXI GAANNNNTTC 4 cut(s) 1822, 2536, 3261, 3678
MslI CAYNNNNRTG 2 cut(s) 268, 1239
MspA1I CMGCKG 4 cut(s) 2746, 2810, 3032, 3041
MspCI CTTAAG 2 cut(s) 842, 3761
MspI CCGG 4 cut(s) 2122, 2529, 3725, 4729
MunI CAATTG 1 cut(s) 3234
Mva1269I GAATGC 3 cut(s) 38, 3169, 4452
NaeI GCCGGC 1 cut(s) 3726
NarI GGCGCC 1 cut(s) 2986
NciI CCSGG 1 cut(s) 4730
NcoI CCATGG 2 cut(s) 2333, 4677
NgoMIV GCCGGC 1 cut(s) 3724
NmuCI GTSAC 5 cut(s) 56, 423, 868, 2855, 4838
NspI RCATGY 6 cut(s) 202, 668, 1664, 1750, 2191, 3423
NspV TTCGAA 1 cut(s) 3221
OliI CACNNNNGTG 1 cut(s) 268
PaeI GCATGC 1 cut(s) 2191
PagI TCATGA 1 cut(s) 3478
PaqCI CACCTGC 1 cut(s) 74
PciI ACATGT 2 cut(s) 1660, 1746
PcsI WCGNNNNNNNCGW 2 cut(s) 126, 2725
PctI GAATGC 3 cut(s) 38, 3169, 4452
PdiI GCCGGC 1 cut(s) 3726
PdmI GAANNNNTTC 4 cut(s) 1822, 2536, 3261, 3678
PflMI CCANNNNNTGG 1 cut(s) 920
PfoI TCCNGGA 3 cut(s) 1468, 1891, 3697
PleI GAGTC 7 cut(s) 824, 865, 893, 2271, 2808, 3876, 4412
PluTI GGCGCC 1 cut(s) 2989
PmaCI CACGTG 1 cut(s) 2720
PmlI CACGTG 1 cut(s) 2720
PpsI GAGTC 7 cut(s) 824, 865, 893, 2271, 2808, 3876, 4412
Ppu21I YACGTR 2 cut(s) 2651, 2720
PpuMI RGGWCCY 1 cut(s) 745
PscI ACATGT 2 cut(s) 1660, 1746
PshBI ATTAAT 1 cut(s) 396
PsiI TTATAA 1 cut(s) 1202
Psp124BI GAGCTC 1 cut(s) 4308
Psp5II RGGWCCY 1 cut(s) 745
PspCI CACGTG 1 cut(s) 2720
PspFI CCCAGC 2 cut(s) 1715, 2873
PspPI GGNCC 8 cut(s) 185, 377, 536, 745, 1184, 2428, 3131, 3948
PspPPI RGGWCCY 1 cut(s) 745
PstI CTGCAG 1 cut(s) 2751
PstNI CAGNNNCTG 1 cut(s) 2540
PsuI RGATCY 7 cut(s) 469, 719, 1093, 3502, 3928, 4681, 4833
PvuII CAGCTG 4 cut(s) 2746, 2810, 3032, 3041
RigI GGCCGGCC 1 cut(s) 3728
RsaI GTAC 6 cut(s) 1405, 1751, 2365, 3810, 4525, 4721
RsaNI GTAC 6 cut(s) 1404, 1750, 2364, 3809, 4524, 4720
RseI CAYNNNNRTG 2 cut(s) 268, 1239
SacI GAGCTC 1 cut(s) 4308
Sau96I GGNCC 8 cut(s) 185, 377, 536, 745, 1184, 2428, 3131, 3948
SchI GAGTC 7 cut(s) 824, 865, 893, 2272, 2809, 3877, 4412
SduI GDGCHC 5 cut(s) 1432, 1759, 4067, 4080, 4308
SfcI CTRYAG 7 cut(s) 1061, 1851, 2321, 2747, 2811, 3834, 4899
SfoI GGCGCC 1 cut(s) 2987
SfuI TTCGAA 1 cut(s) 3221
SinI GGWCC 5 cut(s) 377, 536, 745, 1184, 3131
SmiMI CAYNNNNRTG 2 cut(s) 268, 1239
SmlI CTYRAG 7 cut(s) 520, 842, 1020, 1179, 2210, 2341, 3761
SmoI CTYRAG 7 cut(s) 520, 842, 1020, 1179, 2210, 2341, 3761
SnaBI TACGTA 1 cut(s) 2651
SphI GCATGC 1 cut(s) 2191
SsiI CCGC 3 cut(s) 539, 1462, 3721
SspDI GGCGCC 1 cut(s) 2985
SspMI CTAG 9 cut(s) 590, 1289, 1934, 2432, 2625, 2861, 2921, 4040, 4176
SstI GAGCTC 1 cut(s) 4308
StyI CCWWGG 6 cut(s) 1424, 2333, 2431, 2994, 3786, 4677
TaaI ACNGT 8 cut(s) 1255, 1312, 1852, 2524, 2762, 3404, 3966, 4790
TaiI ACGT 5 cut(s) 1518, 2653, 2722, 4357, 4752
TaqI TCGA 8 cut(s) 129, 598, 1111, 2509, 2691, 3221, 4462, 4597
TatI WGTACW 4 cut(s) 1749, 2363, 4523, 4719
TauI GCSGC 2 cut(s) 1465, 3724
TscAI CASTG 7 cut(s) 1021, 1059, 1317, 1506, 2373, 2527, 3654
TseFI GTSAC 5 cut(s) 56, 423, 868, 2855, 4838
Tsp45I GTSAC 5 cut(s) 56, 423, 868, 2855, 4838
TspGWI ACGGA 4 cut(s) 75, 1946, 1982, 2161
TspRI CASTG 7 cut(s) 1021, 1059, 1317, 1506, 2373, 2527, 3654
Van91I CCANNNNNTGG 1 cut(s) 920
Vha464I CTTAAG 2 cut(s) 842, 3761
VpaK11BI GGWCC 5 cut(s) 377, 536, 745, 1184, 3131
VspI ATTAAT 1 cut(s) 396
XbaI TCTAGA 1 cut(s) 4039
XceI RCATGY 6 cut(s) 202, 668, 1664, 1750, 2191, 3423
XcmI CCANNNNNNNNNTGG 1 cut(s) 1122
XmaJI CCTAGG 1 cut(s) 2431
XmiI GTMKAC 2 cut(s) 1938, 3755
XmnI GAANNNNTTC 4 cut(s) 1822, 2536, 3261, 3678
XspI CTAG 9 cut(s) 590, 1289, 1934, 2432, 2625, 2861, 2921, 4040, 4176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.