Rorug01G0101000

Transcription initiation factor TFIID subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004130
Physical Location & Seq
Reverse (-)
16839214 .. 16844082
4869 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0101000.1

Sequence Viewer

Length: 2343 bp
ATGGCAAAACTTATTTACCCTTCACATCTTCTCTTCTTCCTGTTGGTGGTTCTACTTTGTTTCCATCACTCACAGCAATCCCAGTCCCAGTCCCAACAATGGCAGAGCCTTGTGGAAATCCAGAAGCTTCTAAACTACCCCTCAGCTTTACGTAGCTTCAAGTACACCAGAAGAGGCAGAGGCCTGTGCAGCATTGAACCAACCCCATCTTTGACTCTAGCCTGTTATCAAGGCAACATAACCCAGCTTCACATCACTGGCAACAATGAGTTTCCTCCTCTGCCTAGTGATTTCTCATCTCACTCTTTCTTTGCAAGTATTGCTCAGTTACCAAGCTTGAAAGTTGTTTCTTTGACTTGTCTTGGTTTATGGGGTCCTATCCCTCCAAGTATTGCTCAGTTATCTTCTCTTGAGATACTCAATGTCAGTACAAACTACTTGAGTGGAACCATCCCTCTTCAAATTTCATCCCTCAGAAACCTTCAGACACTCATACTTGACCACAACAAGTTCACCGGTCAAGTCCCAGCTTGGTTAAGCTCACTGCCAGTCTTGTCTGTTTTGAGTTTCAAGAACAACTGGCTTAATGGGTCTCTTCCGTATTCTTTCTCATCTTTGCAGACACTCAGAGTTGTCTCTCTCTCCCACAACTACTTGTCTGGGGAAGTCCCTGATCTTACCAACCTGACAAACTTGCAAGTTCTTGATTTGGAAGACAACTATTTCGGGCCACATTTTCCGAGTTTGCCTAACAAGTTAGTCACACTTGTGCTGAGGAAGAACAAGTTTCGCTTGGGAATCCAGACCACATTACACTCCTCCTCCTGGTTTCAGCTTCAAAAGCTGGACATCTCATTGAATGGATTTGTAGGACCATTTAGGCCATCATTGTTGTCTCTGCCTTCCATTAATTATCTCGACATTGGTGGCAACAAGTTCACTGGAGTACTCTTCAAGAACATGTCTTGCAATGCTGAGCTTGCTTTTGTCAATTTATCCTCAAATCTCTTGACAGGGGAGTTGCCCGATTGTGTTAAAAAGACCAGGATTTCTCTGTATACTCAGAATTGCTTAGCAAATGAAGATCAGGATCAGCAACCTTCTAACTTGTGCCACAATGAAGCTCTTGCTGTGCAAATACCGCCGAGTAAGGAAGAGCATAAGAGACATTATGCTAAGCATGTAATTGCATCAAGTGCTGTGGGGGGTATTGTTGGTGCAATTGCACTTGTTGGTCTAATTTTCGTGGCGGTTAAGAGGTCTAACGGCAACCAAACTACTAAAACTCCTCGGACAAGGTTCATTACCGACACTGCCTCAGCAGTGAACACAGCTAAGCTCCTCTCAGATGCAAAATACATATCAGAAACAATGAAGATGGGCGCTAGCCTTCCTGCTTATAGAACTTTTTCTTTGGAGGAGCTCAAGGAAGCTACCAATAACTTTGATGATTCAACACTACTAGGTGAAGGTTCAGATGGACAGGTTTATAGAGGAGAACTCCCTGATGGAACACTTGTGGCTATAAGAGGCACAAAAATGAGAAAGAGGCATAATCCGCAGGTCTATACGCACCTTATTGAGCTGTTTTCAAAACTGAGACATAGCCATTTGGTTAGCGCTCTTGGACATTGCTTGGAGTTCCATCCAGATGATTCAAGCGTCAGTCGACTATTTCTTGTATCTGAGTTTGTTCCTAATGGAACGCTACGAGGCTGCATCTCTGAATCACGTCCAGGACGAAAGCTTACATGGGCACAAAGAATAGTAGCTGCAATAGGAGTTGCAAAGGGAATTCAGTTTCTGCATACAGGGATTGTTCCTGGTGTGAAATCAATTAATCTGAATATTAAAAATGTCTTGATGGATCATGATCTTCATGTAAAAATAAGCAATTATAGCCTCGCTCTTTTAGCTGAAAACAGGGGAGTGGTGGGCACTTCAGCTGCTTCTCCCTCACCAAAAGGAAGCTTTCAGGCAAGGGTGAAACATGAATGCAAGAACGATGTTTATGACTTTGGAGTAATCTTGCTAGAAATCATTTTGGGGAGGCCCATCATGTTCCAGAATGAAGTTGGTGTCTTGAAAGACCTTCTACGAGAAAGTTTAACCACTGACGACACAGCTCGAAGGAGCATTGTTGATCCATCAGTGCACAAGGAGTGCTCAGATGAATCACTGAAGACAATGATGGAGATATGTGTGAGGTGTTTGTCCAATGAGCCAACTGATAGGCCTTCAGTGGAAGACATTCTTTGGAATTTGCAGTTTGCAGCACAACTCCAGGATTCAGCATCCCTTCTAGACTCACCTGTCTCATCAAATCATTCCCAAGAAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000428 GO:0000988 GO:0000989 GO:0001076 GO:0001129 GO:0001132 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0005669 GO:0006139 GO:0006325 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0008080 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016043 GO:0016070 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016591 GO:0016740 GO:0016746 GO:0016747 GO:0017025 GO:0018130 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019438 GO:0019538 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034212 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051276 GO:0055029 GO:0060255 GO:0061695 GO:0061733 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03022 map03022
Pfam Domains
Protein Families
Bromodomain DUF3591 TBP-binding ubiquitin zf-CCHC_6

Protein Analysis

780

Amino Acids

86.16

Weight (kDa)

8.51

Isoelectric Point (pI)

47.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 104 - 313 5.5e-10 Leucine-rich repeat region
LRR_8 PF13855 159 - 219 4.5e-07 Leucine rich repeat
Pkinase PF00069 484 - 752 2.1e-16 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 487 - 754 8.4e-21 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 2312
Acc36I ACCTGC 1 cut(s) 1552
AccI GTMKAC 2 cut(s) 1058, 1669
AciI CCGC 3 cut(s) 1142, 1250, 1559
AclWI GGATC 3 cut(s) 1098, 1875, 2138
AcsI RAATTY 3 cut(s) 462, 1794, 2260
AcuI CTGAAG 4 cut(s) 467, 1926, 2201, 2223
AfaI GTAC 3 cut(s) 164, 430, 948
AfeI AGCGCT 1 cut(s) 1621
AfiI CCNNNNNNNGG 3 cut(s) 46, 99, 825
AflIII ACRYGT 1 cut(s) 960
AgeI ACCGGT 1 cut(s) 515
AjiI CACGTC 1 cut(s) 1733
AjnI CCWGG 5 cut(s) 824, 1043, 1735, 1822, 2283
AleI CACNNNNGTG 1 cut(s) 767
Alw21I GWGCWC 3 cut(s) 1425, 2157, 2168
Alw26I GTCTC 6 cut(s) 597, 640, 900, 1159, 1594, 2320
Alw44I GTGCAC 1 cut(s) 2153
AlwI GGATC 3 cut(s) 1098, 1875, 2138
AlwNI CAGNNNCTG 1 cut(s) 1804
Aor51HI AGCGCT 1 cut(s) 1621
AoxI GGCC 5 cut(s) 181, 728, 881, 2051, 2234
ApaLI GTGCAC 1 cut(s) 2153
ApeKI GCWGC 5 cut(s) 189, 1716, 1772, 1946, 2273
ApoI RAATTY 3 cut(s) 462, 1794, 2260
ArsI GACNNNNNNTTYG 2 cut(s) 707, 739
AseI ATTAAT 2 cut(s) 909, 1839
AsiGI ACCGGT 1 cut(s) 515
Asp700I GAANNNNTTC 2 cut(s) 1408, 2250
AspLEI GCGC 2 cut(s) 1385, 1622
AspS9I GGNCC 4 cut(s) 374, 728, 872, 2052
AsuHPI GGTGA 5 cut(s) 505, 1478, 1950, 1996, 2301
AsuNHI GCTAGC 1 cut(s) 1385
AvaII GGWCC 2 cut(s) 374, 872
BaeGI GKGCMC 3 cut(s) 1759, 1940, 2157
BanII GRGCYC 1 cut(s) 1425
BbsI GAAGAC 3 cut(s) 720, 2189, 2253
Bbv12I GWGCWC 3 cut(s) 1425, 2157, 2168
BbvCI CCTCAGC 3 cut(s) 142, 773, 1318
BbvI GCAGC 5 cut(s) 201, 1703, 1759, 1933, 2285
BceAI ACGGC 1 cut(s) 1282
BciT130I CCWGG 5 cut(s) 826, 1045, 1737, 1824, 2285
BcoDI GTCTC 6 cut(s) 597, 640, 900, 1159, 1594, 2320
BfaI CTAG 6 cut(s) 218, 285, 1386, 1463, 2033, 2303
BfoI RGCGCY 2 cut(s) 1386, 1623
BfuAI ACCTGC 1 cut(s) 1552
BisI GCNGC 5 cut(s) 190, 1717, 1773, 1947, 2274
BlpI GCTNAGC 4 cut(s) 975, 1072, 1176, 1335
BlsI GCNGC 5 cut(s) 191, 1718, 1774, 1948, 2275
BmcAI AGTACT 1 cut(s) 948
Bme1390I CCNGG 5 cut(s) 826, 1045, 1737, 1824, 2285
Bme18I GGWCC 2 cut(s) 374, 872
BmgBI CACGTC 1 cut(s) 1733
BmgT120I GGNCC 4 cut(s) 374, 728, 872, 2052
BmiI GGNNCC 2 cut(s) 375, 448
BmrFI CCNGG 5 cut(s) 826, 1045, 1737, 1824, 2285
BmrI ACTGGG 2 cut(s) 76, 82
BmsI GCATC 4 cut(s) 1199, 1339, 1728, 2303
BmtI GCTAGC 1 cut(s) 1389
BmuI ACTGGG 2 cut(s) 76, 82
BpiI GAAGAC 3 cut(s) 720, 2189, 2253
BplI GAGNNNNNCTC 2 cut(s) 1485, 1517
BpmI CTGGAG 2 cut(s) 963, 2267
Bpu10I CCTNAGC 3 cut(s) 142, 773, 1318
Bpu1102I GCTNAGC 4 cut(s) 975, 1072, 1176, 1335
BpuEI CTTGAG 3 cut(s) 431, 460, 1409
BsaAI YACGTR 1 cut(s) 152
BsaBI GATNNNNATC 2 cut(s) 1089, 1872
BsaI GGTCTC 1 cut(s) 597
BsaJI CCNNGG 1 cut(s) 1289
BsaWI WCCGGW 1 cut(s) 515
BsaXI ACNNNNNCTCC 4 cut(s) 806, 836, 1270, 1300
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 99, 825
Bse118I RCCGGY 1 cut(s) 515
Bse1I ACTGG 6 cut(s) 82, 88, 262, 548, 584, 946
Bse3DI GCAATG 2 cut(s) 976, 1630
Bse8I GATNNNNATC 2 cut(s) 1089, 1872
BseBI CCWGG 5 cut(s) 826, 1045, 1737, 1824, 2285
BseDI CCNNGG 1 cut(s) 1289
BseGI GGATG 4 cut(s) 450, 467, 1645, 2294
BseJI GATNNNNATC 2 cut(s) 1089, 1872
BseLI CCNNNNNNNGG 3 cut(s) 46, 99, 825
BseMI GCAATG 2 cut(s) 976, 1630
BseNI ACTGG 6 cut(s) 82, 88, 262, 548, 584, 946
BseRI GAGGAG 7 cut(s) 267, 808, 811, 1278, 1331, 1433, 1509
BseSI GKGCMC 3 cut(s) 1759, 1940, 2157
BseXI GCAGC 5 cut(s) 201, 1703, 1759, 1933, 2285
BseYI CCCAGC 2 cut(s) 243, 526
BsgI GTGCAG 1 cut(s) 208
BshFI GGCC 5 cut(s) 183, 730, 883, 2053, 2236
BshTI ACCGGT 1 cut(s) 515
BsiHKAI GWGCWC 3 cut(s) 1425, 2157, 2168
BsiSI CCGG 1 cut(s) 516
BslFI GGGAC 4 cut(s) 70, 76, 509, 653
BslI CCNNNNNNNGG 3 cut(s) 46, 99, 825
BsmAI GTCTC 6 cut(s) 597, 640, 900, 1159, 1594, 2320
BsmFI GGGAC 4 cut(s) 70, 76, 509, 653
BsmI GAATGC 1 cut(s) 2000
BsnI GGCC 5 cut(s) 183, 730, 883, 2053, 2236
Bso31I GGTCTC 1 cut(s) 597
Bsp1286I GDGCHC 5 cut(s) 1425, 1759, 1940, 2157, 2168
Bsp143I GATC 6 cut(s) 673, 1084, 1090, 1867, 1873, 2143
Bsp1720I GCTNAGC 4 cut(s) 975, 1072, 1176, 1335
BspACI CCGC 3 cut(s) 1142, 1250, 1559
BspANI GGCC 5 cut(s) 183, 730, 883, 2053, 2236
BspHI TCATGA 1 cut(s) 1870
BspLI GGNNCC 2 cut(s) 375, 448
BspMI ACCTGC 1 cut(s) 1552
BspOI GCTAGC 1 cut(s) 1389
BspPI GGATC 3 cut(s) 1098, 1875, 2138
BspQI GCTCTTC 1 cut(s) 1149
BspTNI GGTCTC 1 cut(s) 597
BsrDI GCAATG 2 cut(s) 976, 1630
BsrFI RCCGGY 1 cut(s) 515
BsrI ACTGG 6 cut(s) 82, 88, 262, 548, 584, 946
BssAI RCCGGY 1 cut(s) 515
BssECI CCNNGG 1 cut(s) 1289
BssMI GATC 6 cut(s) 673, 1084, 1090, 1867, 1873, 2143
BssNAI GTATAC 1 cut(s) 1059
Bst1107I GTATAC 1 cut(s) 1059
Bst2UI CCWGG 5 cut(s) 826, 1045, 1737, 1824, 2285
Bst6I CTCTTC 6 cut(s) 38, 166, 462, 600, 956, 1149
BstAPI GCANNNNNTGC 2 cut(s) 320, 1196
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 2 cut(s) 981, 1387
BstF5I GGATG 4 cut(s) 450, 467, 1645, 2294
BstH2I RGCGCY 2 cut(s) 1386, 1623
BstHHI GCGC 2 cut(s) 1385, 1622
BstKTI GATC 6 cut(s) 676, 1087, 1093, 1870, 1876, 2146
BstMAI GTCTC 6 cut(s) 597, 640, 900, 1159, 1594, 2320
BstMBI GATC 6 cut(s) 673, 1084, 1090, 1867, 1873, 2143
BstMWI GCNNNNNNNGC 9 cut(s) 189, 320, 841, 980, 1141, 1196, 1558, 1899, 1913
BstNI CCWGG 5 cut(s) 826, 1045, 1737, 1824, 2285
BstNSI RCATGY 2 cut(s) 964, 1184
BstSCI CCNGG 5 cut(s) 824, 1043, 1735, 1822, 2283
BstSLI GKGCMC 3 cut(s) 1759, 1940, 2157
BstSNI TACGTA 1 cut(s) 152
BstV1I GCAGC 5 cut(s) 201, 1703, 1759, 1933, 2285
BstV2I GAAGAC 3 cut(s) 720, 2189, 2253
BstZ17I GTATAC 1 cut(s) 1059
BsuRI GGCC 5 cut(s) 183, 730, 883, 2053, 2236
BtrI CACGTC 1 cut(s) 1733
BtsCI GGATG 4 cut(s) 450, 467, 1645, 2294
BtsI GCAGTG 3 cut(s) 542, 1311, 1329
BtsIMutI CAGTG 9 cut(s) 255, 542, 939, 1311, 1329, 2112, 2157, 2177, 2247
BveI ACCTGC 1 cut(s) 1552
Cac8I GCNNGC 2 cut(s) 981, 1387
CaiI CAGNNNCTG 1 cut(s) 1804
CciI TCATGA 1 cut(s) 1870
CfoI GCGC 2 cut(s) 1385, 1622
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 4 cut(s) 374, 728, 872, 2052
CseI GACGC 1 cut(s) 1651
Csp6I GTAC 3 cut(s) 163, 429, 947
CspAI ACCGGT 1 cut(s) 515
CspCI CAANNNNNGTGG 2 cut(s) 1182, 1217
CviAII CATG 7 cut(s) 961, 1181, 1752, 1871, 1880, 1991, 2059
CviQI GTAC 3 cut(s) 163, 429, 947
DpnI GATC 6 cut(s) 675, 1086, 1092, 1869, 1875, 2145
DpnII GATC 6 cut(s) 673, 1084, 1090, 1867, 1873, 2143
DrdI GACNNNNNNGTC 1 cut(s) 2312
DseDI GACNNNNNNGTC 1 cut(s) 2312
Eam1104I CTCTTC 6 cut(s) 38, 166, 462, 600, 956, 1149
EarI CTCTTC 6 cut(s) 38, 166, 462, 600, 956, 1149
Ecl136II GAGCTC 1 cut(s) 1423
Eco105I TACGTA 1 cut(s) 152
Eco147I AGGCCT 2 cut(s) 183, 2236
Eco24I GRGCYC 1 cut(s) 1425
Eco31I GGTCTC 1 cut(s) 597
Eco47I GGWCC 2 cut(s) 374, 872
Eco47III AGCGCT 1 cut(s) 1621
Eco53kI GAGCTC 1 cut(s) 1423
Eco57I CTGAAG 4 cut(s) 467, 1926, 2201, 2223
EcoICRI GAGCTC 1 cut(s) 1423
EcoO109I RGGNCCY 1 cut(s) 374
EcoRI GAATTC 1 cut(s) 1794
EcoRII CCWGG 5 cut(s) 824, 1043, 1735, 1822, 2283
EcoT38I GRGCYC 1 cut(s) 1425
FaeI CATG 7 cut(s) 964, 1184, 1755, 1874, 1883, 1994, 2062
FalI AAGNNNNNCTT 4 cut(s) 776, 808, 2238, 2270
FaqI GGGAC 4 cut(s) 70, 76, 509, 653
FatI CATG 7 cut(s) 960, 1180, 1751, 1870, 1879, 1990, 2058
FblI GTMKAC 2 cut(s) 1058, 1669
Fnu4HI GCNGC 5 cut(s) 190, 1717, 1773, 1947, 2274
FokI GGATG 4 cut(s) 437, 454, 1632, 2281
FriOI GRGCYC 1 cut(s) 1425
Fsp4HI GCNGC 5 cut(s) 190, 1717, 1773, 1947, 2274
FspBI CTAG 6 cut(s) 218, 285, 1386, 1463, 2033, 2303
GlaI GCGC 2 cut(s) 1384, 1621
GluI GCNGC 5 cut(s) 190, 1717, 1773, 1947, 2274
GsaI CCCAGC 2 cut(s) 247, 530
GsuI CTGGAG 2 cut(s) 963, 2267
HaeII RGCGCY 2 cut(s) 1386, 1623
HaeIII GGCC 5 cut(s) 183, 730, 883, 2053, 2236
HapII CCGG 1 cut(s) 516
HgaI GACGC 1 cut(s) 1651
HhaI GCGC 2 cut(s) 1385, 1622
Hin1II CATG 7 cut(s) 964, 1184, 1755, 1874, 1883, 1994, 2062
Hin6I GCGC 2 cut(s) 1383, 1620
HinP1I GCGC 2 cut(s) 1383, 1620
HincII GTYRAC 1 cut(s) 1670
HindII GTYRAC 1 cut(s) 1670
HindIII AAGCTT 4 cut(s) 125, 334, 1745, 1969
HinfI GANTC 8 cut(s) 214, 798, 1451, 1655, 1727, 2174, 2288, 2306
HpaII CCGG 1 cut(s) 516
HphI GGTGA 5 cut(s) 505, 1478, 1950, 1996, 2301
Hpy166II GTNNAC 7 cut(s) 165, 513, 939, 1059, 1327, 1670, 2155
Hpy8I GTNNAC 7 cut(s) 165, 513, 939, 1059, 1327, 1670, 2155
HpyCH4IV ACGT 2 cut(s) 151, 1732
HpyF10VI GCNNNNNNNGC 9 cut(s) 189, 320, 841, 980, 1141, 1196, 1558, 1899, 1913
HpySE526I ACGT 2 cut(s) 151, 1732
Hsp92II CATG 7 cut(s) 964, 1184, 1755, 1874, 1883, 1994, 2062
HspAI GCGC 2 cut(s) 1383, 1620
Kzo9I GATC 6 cut(s) 673, 1084, 1090, 1867, 1873, 2143
LguI GCTCTTC 1 cut(s) 1149
LmnI GCTCC 3 cut(s) 1344, 1420, 2133
Lsp1109I GCAGC 5 cut(s) 201, 1703, 1759, 1933, 2285
LweI GCATC 4 cut(s) 1199, 1339, 1728, 2303
MaeI CTAG 6 cut(s) 218, 285, 1386, 1463, 2033, 2303
MaeII ACGT 2 cut(s) 151, 1732
MaeIII GTNAC 2 cut(s) 327, 760
MalI GATC 6 cut(s) 675, 1086, 1092, 1869, 1875, 2145
MboI GATC 6 cut(s) 673, 1084, 1090, 1867, 1873, 2143
MfeI CAATTG 1 cut(s) 1221
MhlI GDGCHC 5 cut(s) 1425, 1759, 1940, 2157, 2168
MlyI GAGTC 2 cut(s) 208, 2300
MroXI GAANNNNTTC 2 cut(s) 1408, 2250
MseI TTAA 8 cut(s) 536, 585, 909, 1035, 1254, 1839, 1851, 2108
MslI CAYNNNNRTG 3 cut(s) 767, 1538, 1650
MspA1I CMGCKG 1 cut(s) 1946
MspI CCGG 1 cut(s) 516
MspR9I CCNGG 5 cut(s) 826, 1045, 1737, 1824, 2285
MunI CAATTG 1 cut(s) 1221
Mva1269I GAATGC 1 cut(s) 2000
MvaI CCWGG 5 cut(s) 826, 1045, 1737, 1824, 2285
MwoI GCNNNNNNNGC 9 cut(s) 189, 320, 841, 980, 1141, 1196, 1558, 1899, 1913
NdeII GATC 6 cut(s) 673, 1084, 1090, 1867, 1873, 2143
NheI GCTAGC 1 cut(s) 1385
NlaIII CATG 7 cut(s) 964, 1184, 1755, 1874, 1883, 1994, 2062
NlaIV GGNNCC 2 cut(s) 375, 448
NmeAIII GCCGAG 1 cut(s) 1170
NmuCI GTSAC 1 cut(s) 760
NspI RCATGY 2 cut(s) 964, 1184
OliI CACNNNNGTG 1 cut(s) 767
PagI TCATGA 1 cut(s) 1870
PceI AGGCCT 2 cut(s) 183, 2236
PciI ACATGT 1 cut(s) 960
PciSI GCTCTTC 1 cut(s) 1149
PcsI WCGNNNNNNNCGW 1 cut(s) 1738
PctI GAATGC 1 cut(s) 2000
PdmI GAANNNNTTC 2 cut(s) 1408, 2250
PfeI GAWTC 6 cut(s) 798, 1451, 1655, 1727, 2174, 2288
PfoI TCCNGGA 2 cut(s) 1735, 2283
PinAI ACCGGT 1 cut(s) 515
PkrI GCNGC 5 cut(s) 191, 1718, 1774, 1948, 2275
PleI GAGTC 2 cut(s) 208, 2300
PpsI GAGTC 2 cut(s) 208, 2300
Ppu21I YACGTR 1 cut(s) 152
PpuMI RGGWCCY 1 cut(s) 374
PscI ACATGT 1 cut(s) 960
PshBI ATTAAT 2 cut(s) 909, 1839
Psp124BI GAGCTC 1 cut(s) 1425
Psp5II RGGWCCY 1 cut(s) 374
Psp6I CCWGG 5 cut(s) 824, 1043, 1735, 1822, 2283
PspFI CCCAGC 2 cut(s) 243, 526
PspGI CCWGG 5 cut(s) 824, 1043, 1735, 1822, 2283
PspN4I GGNNCC 2 cut(s) 375, 448
PspPI GGNCC 4 cut(s) 374, 728, 872, 2052
PspPPI RGGWCCY 1 cut(s) 374
PstNI CAGNNNCTG 1 cut(s) 1804
PvuII CAGCTG 1 cut(s) 1946
RsaI GTAC 3 cut(s) 164, 430, 948
RsaNI GTAC 3 cut(s) 163, 429, 947
RseI CAYNNNNRTG 3 cut(s) 767, 1538, 1650
SacI GAGCTC 1 cut(s) 1425
SalI GTCGAC 1 cut(s) 1668
SapI GCTCTTC 1 cut(s) 1149
SaqAI TTAA 8 cut(s) 536, 585, 909, 1035, 1254, 1839, 1851, 2108
SatI GCNGC 5 cut(s) 190, 1717, 1773, 1947, 2274
Sau3AI GATC 6 cut(s) 673, 1084, 1090, 1867, 1873, 2143
Sau96I GGNCC 4 cut(s) 374, 728, 872, 2052
ScaI AGTACT 1 cut(s) 948
SchI GAGTC 2 cut(s) 208, 2300
ScrFI CCNGG 5 cut(s) 826, 1045, 1737, 1824, 2285
SduI GDGCHC 5 cut(s) 1425, 1759, 1940, 2157, 2168
SfaNI GCATC 4 cut(s) 1199, 1339, 1728, 2303
SinI GGWCC 2 cut(s) 374, 872
SmiMI CAYNNNNRTG 3 cut(s) 767, 1538, 1650
SmlI CTYRAG 3 cut(s) 410, 439, 1424
SmoI CTYRAG 3 cut(s) 410, 439, 1424
SnaBI TACGTA 1 cut(s) 152
SseBI AGGCCT 2 cut(s) 183, 2236
SsiI CCGC 3 cut(s) 1142, 1250, 1559
SspI AATATT 1 cut(s) 1849
SspMI CTAG 6 cut(s) 218, 285, 1386, 1463, 2033, 2303
SstI GAGCTC 1 cut(s) 1425
StuI AGGCCT 2 cut(s) 183, 2236
StyD4I CCNGG 5 cut(s) 824, 1043, 1735, 1822, 2283
TaiI ACGT 2 cut(s) 154, 1735
TaqI TCGA 3 cut(s) 918, 1669, 2128
TatI WGTACW 3 cut(s) 162, 428, 946
TfiI GAWTC 6 cut(s) 798, 1451, 1655, 1727, 2174, 2288
Tru1I TTAA 8 cut(s) 536, 585, 909, 1035, 1254, 1839, 1851, 2108
Tru9I TTAA 8 cut(s) 536, 585, 909, 1035, 1254, 1839, 1851, 2108
TscAI CASTG 9 cut(s) 262, 549, 946, 1318, 1329, 2119, 2157, 2184, 2247
TseFI GTSAC 1 cut(s) 760
TseI GCWGC 5 cut(s) 189, 1716, 1772, 1946, 2273
Tsp45I GTSAC 1 cut(s) 760
TspDTI ATGAA 9 cut(s) 456, 1095, 1134, 1291, 1388, 1868, 2007, 2085, 2187
TspGWI ACGGA 1 cut(s) 588
TspRI CASTG 9 cut(s) 262, 549, 946, 1318, 1329, 2119, 2157, 2184, 2247
VneI GTGCAC 1 cut(s) 2153
VpaK11BI GGWCC 2 cut(s) 374, 872
VspI ATTAAT 2 cut(s) 909, 1839
XapI RAATTY 3 cut(s) 462, 1794, 2260
XbaI TCTAGA 1 cut(s) 2302
XceI RCATGY 2 cut(s) 964, 1184
XcmI CCANNNNNNNNNTGG 1 cut(s) 2072
XmiI GTMKAC 2 cut(s) 1058, 1669
XmnI GAANNNNTTC 2 cut(s) 1408, 2250
XspI CTAG 6 cut(s) 218, 285, 1386, 1463, 2033, 2303
ZrmI AGTACT 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.